gi|00000000|ref|NC_000000|  Protochlamydia naegleriophila genome assembly PNK1, plasmid : pPNK. [asmbl_id: NC_000000].145285, gc%: 37.21%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
274..1872                          PHAGE_Acinet_YMC11/12/R2315_NC_028855: hypothetical protein; PNK_RS12215; phage(gi971749823)     3.42e-26            MSYPISEIVTKIGEISIRGNIIPDQWYTHLRNDKGKIQINSAIILAEILYWYRPVPVYDIKTGQQTGFGKKFKDDLLQLNYTYFSEKFGFTTSQSRSAIIFLEQKGLIFREFRDIIVEKHALNNVMFINICPQRIQEITGLQEKTNLVTTETHQSQSRSLSTVGEPIKPFTPKVKDWSSKFSDDQKTFLQYLLSIKPEHGDPIQKNNATWWIKHFGIAKIETALQVYWQQVEKAKNDSDVPMPESIGKYVRKALNDGYVPNKVLKETQASNQTTSSSSQVSTEAPVKSIAEQDSTAVFPYSENSQQGVKNFEGGVQKNQKTNTEISLLSLPVNEVNDLQSSVTSFDKADHTSTSKTHVEIVQQKKKFNSKKKNSAPNWSENFSVEEKKFLAYLLKIIPEKGSLIEEKHATWWIKHFGIAKIKTALQVYWQQVEKAKKNQSVPMPASIGAYVRNALDNAIQPCREGDLKNKSFAERFKRHYRWGDLTITERYCRVEGSGKEWYYHMPESLFQDSLKTFYENSCTFEERLVFIA
2278..2532                         transcriptional regulator; PNK_RS12220                                               N/A                 MDLKDYLKLNPEIKIDDLAKKLGVHRNHISGIIHKRRIPSLDLAIKIIKLTNDQVQMDDLIPKQVEICPCCKRKLPRGFVLPEH
2829..3017                         hypothetical protein; PNK_RS12225                                                    N/A                 MFTALEARLSIAYELEGYYLMDSLFKENERSKYELNSLNIEREEYAFYEWLDKEECDRSVSF
3106..3882                         PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; PNK_RS12230; phage(gi414086954)     8.05e-40            MNYFLDEVKLRKFAPSIFADCRASWTSERYEFISTNECLLGLKEAGFLPVMASQSRTRLKDKIGYTKHMIRLRHRSLQEAGGMVPEIILTNAHDGTSSYQLRAGIYRFICANGLIIGNELFCRRVRHQGDVTQKVVASAKDLLKLVPYSLEMTNLWQLIQLNDHQKIAYSLEAPKIKWGGEIPIDPEKLLIPSRGQDEGNDVWTTFNVVQENLFKGGLRYRTSKGVKRHTRAIKSIEENVRVNTKLWALTENLACLLN
4372..4602                         hypothetical protein; PNK_RS12235                                                    N/A                 MQVKHLVQHGNSKAIIIEKSVLQAAGLDENCLFQIVVDANTGITIQSVKPVNSKFEEAKKQTFKEYAPLFKRLADR
4599..4976                         PHAGE_Gordon_Bantam_NC_031074: hypothetical protein; PNK_RS12240; phage(gi100132)     1.82e-12            MIFLSVEEVIHIHDELISEYGGLHGVRDMGLLISALEMPKAAMYGEYLHESIFDKASAYLFHIICNHAFIDGNKRTGAAVPLIFLLQNGRKAKYNLDDFEEMVCKVAKGLFSKEEISKFLQSKEL
complement(4962..5270)             PHAGE_Burkho_phiE255_NC_009237: gp35; PNK_RS12245; phage(gi134288835)                4.21e-10            MTTTKKDLITHIYSNNDIHPSDVQLIIQAFLDKILETLGKGQRLEFRDFVVFEIVRRKQKIGRNLKNSSTPIIIPAHFAVKFTAGKEMKNRLVDMKSHLKLF
5658..6008                         PHAGE_Gordon_CaptainKirk2_NC_031072: hypothetical protein; PNK_RS12255; phage(gi100036)     3.57e-19            MRQQRRNVSLKMVLKLFPPKRCGIIWDGMKRYKLKFDCDLKKILSKIPKYDGVLLRKRMTLLEEDPRPNGALKLKGQDNSYRIRCGKYRIIYEIKDNELIVLIIDVDSRKDVYKGL
complement(6133..6483)             PHAGE_Burkho_phiE255_NC_009237: gp35; PNK_RS12260; phage(gi134288835)                2.04e-14            MSKKESRKPMTTTKKDLITHISSNNHIHPSDVQLIIQAFLDKILETLRKGQRLEFRDFGVFEVVRRKQKIGRNPKQSDTPIVIPAHFAVKFSAGKEMKKRLEPQQNSKDPNSSHQA
complement(6476..6970)             disulfide bond formation protein B; PNK_RS12265                                      N/A                 MTIIPLYHYQKWNKDSLLIWLSITSALILIYSYYHQLIEKIDPCFLCVWQRYIYFAVFFTSPLGLFQKYNAFVRHVLSAIFTLGLGLATYHIFIQLGLVTDRCAIIQKINHIDDFMHLLEKSKESCSKINWSFFGFSITVYNAIFSLFAITALNWKYIKRQIYV
complement(6974..7420)             hypothetical protein; PNK_RS12270                                                    N/A                 MDKFEEKKKRIDERIEKNLLKKKLLLAKEKKRRAIKFSDIGRIAFKANIDFLDEDILLGAFLEIAMNSNESNFSKWKTLASEFSSSKSSNQIYSINFLEEPESSIKQKLKENKFSWNRFRKEYYGKGDKIGIEKMLQGCKFTLEEICQ
7700..12097                        PHAGE_Verruc_P8625_NC_029047: DNA primase/helicase; PNK_RS12275; phage(gi981221160)     1.76e-20            MAIGFARLEFVKRSAGKNACAKAAYNGREQIHFNGTSFSPPMTYDWSFKEKPVYHDILLPKGADPSFKNGKNLWNLVEKKENRINSQVALEMVIALPDDKAISIEDRIELIQTFIEEHLVSKGLAVQVDIHQPEKLKSYSSKTLDVEDLEHNWHAHLLITTRRFDESGLDFEDHKARDLMPAMRTVNSNELSIVQRANAVVVNGVNWGALWTQFQNKFFESKGLDLRVDENGIVSQTHLGPVRMRRRAFDLEEENKLLIALNQEESKDSSAILKKITETRSVFNFSDVERFIQKNVPFDSRDVIRQSFWEQNEIVPLIDSKTQNSTGQFSTRSIIEEEKLILRLADSIQEKKALNLRNKQLEDEASELNSEQLDAFRSIIKGKRLSCIEGHAGTGKSYLLGALKNVYEKESYLVRALGPDDATAQVLKEKGFSSIDNVYRFLFLEHHKKIEVKKNEVWIVDETSKLANRPLSELLKLAKKHDAQLVFAGCTSQLPSVERGGLFTAFCERYGAEELVEIQRQKQLDQRSMAQSLASGQMAAAIDKLVSFGEIKWQETKQESIESLVKAWASDQTAFPNQSFLILAHSNSEVRILNEMARLYRKEKGELSDEEFACQTSAGKIYVSVGDKLEFRKKDNQLGVVNGTVATLVDVSNSQFTVYISDQNRRMTFNPEEYNSFQLGYATTYFRSQGQTVDRAYVLHSPQMNKEKFYVGLTRHVHKATLFVSSDETSCLADLKKQAFRKDKRENTLNFTTEEQIGERQSAMQRQQRILDLKHSSSVVSKVKGHSLGLWDSLKSSISSHYQRSKDLKPKEEFFNPKIDKSISKGLVVKIDDQHKDYSVIKSEVGSSFKEMLSRNSQSQEEVQPATKKDLGVKWQGLDDKGSSLLKGYYSALNQSSALYTLVRSDMTGKDFKTSSHFNEWQKSCVHRNAQAFEVMKTIPKHFVQQAMGGDAFQILQDRASKYESYNSQKQADAVSISDKVREKLDHFLYRLFPDGPTGRDAKGLRFGSKHALSVICKGDEAGCYYDFEKGEGGGPVKLVQHVLSMSREDALKWINEVVDDQTNMRVPSQYHFKGSDKHTGEWQSLKPFNETAPDLEKISPYFNKTYNEVARHAYRDQNGDLLFYTLRLVKKSNPSEKMVLPLTYGQWNGSNEASWCLKAHQADKRSLYKLELINDYPKAKILVVEGEKTADAAQKLYSKESMICVSWQGGSGAVAKADWSSLFGRDIVIWPDNDKAGFKAAESIVSELRKTGVKSIKVVNQEELSNKFPDKWDLADPLPNGMKDQDVHNLISFSREKTIGIGQLTSKTLDKSQALEILWRVEERLWSSLEQSYEERIWDLKHEIYKEFSRLVSHQQVLEAKIQSECQNPELSRRISFQLVLEEAHKGKNGLSIDAMKQILTHGNFNLSKDHIEELDKLIASALSLGMSSESIKKEITSKSIDISNKPAIDSFKAQKTLDNDISI

#### region 2 ####
complement(80558..81124)           PHAGE_Entero_Mu_NC_000929: Gin; PNK_RS12600; phage(gi9633542)                        1.61e-56            MLIGYARVSTDDQNLDLQKDALTKIGCERILEDHLSGAKDQRPGLQKAFDYAREGDTLVVWRLDRLSRSLKDLIEMVNLLDEKGIGLKSIHESIDTSSSSGKLIFHFFGALAEFERNLIRERTQAGLQAARARGRNGGRPKSLNADKMALAIKLYDEKKHSIGQICRMVEISKPTLYKYIKDGKCHVL
81285..81734                       DUF4158 domain-containing protein; PNK_RS12605                                       N/A                 MSSIHETAYPQFKPNLTDQELDEIYTPSQEELKFIHEQGNSQIEKLSLLVLLKTGQRLGYFIPPSDVFSNITAHIAKCCHLNIENRQLRELEQTGARHRLRDLARSYLKLKTFDEECKATDRVNGTNSKKNLRSPPIKKPGLISTTSLG
complement(82359..82636)           PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; PNK_RS12610; phage(gi100060)      4.79e-07            IGDAINVKHIKSPWDEILCLAASIKQGTVTANSEVTHIRMAYQHEKSGGLNALFLIWLGYKMLNYAVALRLDTRERLKTCCLFQSTGLGC
complement(82636..82899)           PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; PNK_RS12615; phage(gi100060)      1.27e-18            MPTNHVKPQKTYLQALYPSVGRKFFFSDDGIDRCFYELCVLSELKNALRSGNLCMHGSRQFKDFEEYLLPTEKSASLKEAKQSPIIL
83322..83528                       PHAGE_Burkho_ST79_NC_021343: HicB protein; PNK_RS13210; phage(gi509141623)           3.19e-05            IIGLRDVITLDGYLGCKERGQEPEKLFSGNIHLRLKPDLHAKLATDAKYRGIGLNHYINQTLQQAVG
complement(83770..84042)           hypothetical protein; PNK_RS12620                                                    N/A                 MRIKKGGKISEFEPEKYLSKEFIGSAIMECLINNDPEGVVELLEIYMDEHNKVALFKEANVARSTAYQAFKHKNPTIKTLAKIVSTVAIY
complement(84032..84373)           PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PNK_RS12625; phage(gi100020)     1.81e-08            MNRYEVVQTDKYKEWFDKQSLKTKAVISKRIKNIKESGYFGDFKNVSEYDKGITKNCIFELRWDDGKRVYYGKVGSIYLLLLYGGNKNGQDKDIKEAKNLFTYYVEKGGEVEN
complement(84580..85620)           PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; PNK_RS12630; phage(gi100071)      1.17e-11            MNSLDKVFLEENGIVNGNEILESLIYASKLANDYAKNSRSKNTVKSYGSDWKDFSFWCQARGLSTLPADPCTVACYLADRASQDYIDSNENQRSPLKTSTLARRLSAISQAHKVAGLDFNRKHPSIQETWKGIKNTHGTAQKGKEPILIEDLRRMIDSIQLETEGESRLIGFRDRALLLLGFAGAFRRSELVSLQLCDLKLVRDGYIIYLKRSKTDQQGEGREIAIPYGSNPTTCPVRALQDWINVGCLLEGPLFMPINRHGQKSTKAMSSHAVAIIVKKYAATKEIATGMSGHSLRSGFATSAAMAGVQEYAIMKQTGHKRSDTLKKYIRSRDLWRDNPASKIGL
85933..86157                       hypothetical protein; PNK_RS12635                                                    N/A                 MEEQSEDNLGSKKKSYVKNKFTTYLNEEAENALTELYIHRLRKNRIDRRTARSQIVCEALIELYKKECGENGLC
86777..87037                       hypothetical protein; PNK_RS12640                                                    N/A                 MKHVEKSRINFDIPTPLHQELKIQAIRLGLSVRGTQALEDKLMELARQEEAEKIEKYHILMDKYEKGEVETISHDEMMKRVDWDAL
complement(87178..87696)           hypothetical protein; PNK_RS12645                                                    N/A                 MVEILPGECFERIYAAVNKEIDRLTIPIDRFDPDPKSDRELITRRKCGDIKHALDRLFQATVAKYPDLIIDNKKRPFLPDEIDKKQVAIWNLSTIDEMLDAQFSIWETEIEPWTSGDMDFSGREAGYRKQISLRTALNISRNNIFNYMGESTWGPLWGKTKALELVEKELGI
complement(88036..88242)           hypothetical protein; PNK_RS12650                                                    N/A                 MQKPWKVLTGNDRGDAEIAENMLVDLPCRVKSVRGDGAYDASRFRKKVYDKGGTCIVPQMLRNQNLIF
complement(88286..88693)           PHAGE_Entero_HK022_NC_002166: IS903 transposase; PNK_RS12655; phage(gi9634149)       2.53e-37            MQTGPTYRIRNWAEYNKALIQRGSITVWVDEKAIKNWFSSYHTCQAGRSATYSDEAILMLLILRQVYKRSLRSLQGFAQSLFTAMGPSYSHISRRAKSLHKRISQLTKGKQARHIIFHSTGLKVHGEGEWKVKLH
complement(88800..89527)           IS1 family transposase; PNK_RS12660                                                  N/A                 ICCTQCQSQTVRKNGSIHSGKQKYKCLACHKQFVEEPQNKIISDDIKERIRRSLLERVSLEGICRIFDVSMPWLLGFMEKTFQSLPEDLNATIIAENDEFEVAVLEGDEMWSFVGSKSNDQWLWLVMHSSTRQILAFHVGKRNKAAGEALIAKLPEELKKKPTFTQISSRFTMKLSHGRNIVLSAKNLGRQVTLKDLIARSDRDVQDSEKLCHFQRNLRTTVRKCLSVIITKINHYIFAG
89600..90112                       PHAGE_Entero_HK022_NC_002166: IS903 transposase; PNK_RS12665; phage(gi9634149)       7.08e-53            MFRVTPTYRIRNWAEYNKALIQRGSITVWVDEKAIKNWFSSYHTCRAGRPATYSDEAILMLLILREVYKRSLRSLQGFAQSLFTAIGLDLPIPSYSQISRRAKSLHKRVGQLTKGKQARHIIFDSTGLKVHGEGEWKVKVHGKSKRRTWRKFHIGIDAETLEIVCCELTT
complement(90145..90309)           IS982 family transposase; PNK_RS13215                                                N/A                 AMSETVNYQLKNISQIEHTRHRSGGNFLVNILGGLAAYSHQPKKPSLNLVEGKT
complement(90350..90873)           PROPHAGE_Xantho_33913: ISxcc1 transposase; PNK_RS13220; phage(gi21232565)            1.35e-22            IVDEFTRESLKMVVDTSLSALRVVRELEELIKSRGCPRQIISDNGTEFTSMAVLKWSERVSIGWDYIEPGKPMQNGLCINHLKLEISKTYNRLSMTVHLFNTACKMEGKVLMGEEMNFTSTGLVVCKKLKVQKNGGKTIIIGAPIVRCMVFHLKSLERLMIKQMHAG
complement(90997..91248)           PROPHAGE_Xantho_33913: IS1477 transposase; PNK_RS13225; phage(gi77747809)            1.26e-08            MDNYRFSQRRAFKLLVLHRSVGRYMSKRQGDKQEKALIKTVALERPRFGYRRIHLVLKKRGLEINHKKLFRLYREMGLKVRKRG
complement(91284..91547)           PROPHAGE_Xantho_33913: IS1404 transposase; PNK_RS12675; phage(gi21232568)            1.08e-31            MKKRFTEEQIIKILKEVDSGVPLAEVCRKHGFSTASYYKWKAKFGGMDVSEAQRLRILEAENAKLKRLVADQALDIIALKDVLSKKW
