gi|00000000|ref|NC_000000|  Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 [asmbl_id: NC_000000].93844, gc%: 53.12%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
21189..21200                       attL                                                                                 N/A                 CTGTATCACGCT
21466..22248                       PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; STMDT2_RS23400; phage(gi764159894)     9.08e-07            MSQPPLPAVCTQAASALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRAEKAARTAGRMPSGSQPHRLVPLSDNQYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADDVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKVFALDVAARHRVQFQMPGADAVAMLKGGS
22257..22808                       EAL domain-containing protein; STMDT2_RS23405                                        N/A                 MHFSAFRLQQAIRNREFTPFYQPIVCATGGEVVGCEMLARWLHPQKGLLSAGNFIPAIEATGLGGALLRGLADEVCGDGQDLARSAGRRLMMTLNLSLSLVMTPLFRPHLLALSIRLEQAGMTPVFEITEREDIRAFPQAAVFRQLAAGGLRFAVDDFGTGHAGPASTVADRMIARTVSLARC
22821..22970                       diguanylate phosphodiesterase; STMDT2_RS25715                                        N/A                 MAEGIETPAQAARLRDAGGDYLQGWHCGAPMPFGLFHFRLTQKSQPAFG
22974..23483                       CaiF/GrlA family transcriptional regulator; STMDT2_RS23410                           N/A                 MRTGVISMNQPLLFRTVAGRQSNHEGFYMPPGIRHLGTLSLYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHNDDDICFDSRLHPVRGGRAQLVVRIRAVESRPDTIRRQRTDRPGGKVSDRQYDRQMAHWLLSRPAGGDTAKLAAWQAACPVREASC
23477..23962                       hypothetical protein; STMDT2_RS23415                                                 N/A                 MLIIVSDCQFTRLALTRLLAHLDPVNMSVARWLQTAPPAGSHVLLAASPGMPASLVPACHHARTSLSLKLALLGSGGQAVFLNTLGLRPDCLLPRTASATQLKAAVSSWLRRARGWRQATTESLSLRERQALCATLAGLSARTAPGSASAPKPFTAIAAAR
24682..25242                       inverse autotransporter beta-barrel domain-containing protein; STMDT2_RS23425        N/A                 MLGANIFLDYDLSRDHARAGFGGEYWRDFLKLSANAYVGLTGWKTSPDVEDYEERPASGWDLRAEGYLPSYPQLGAKMVYEQYYGNEVGLFGKDERQKNPHALTAGVSWTPVPLLKLSAEQRAGKAGEHDTRFGAEASYRIGDSLRSQLDPDAVGALRSLAGSRYDLTDRNNDIILEYRKQEVTCQ
complement(25309..25659)           PHAGE_Clostr_c_st_NC_007581: putative IS transposase (OrfB); STMDT2_RS23430; phage(gi80159731)     3.32e-12            MLRATKVCIYPTPEQAEHLNAQFGAVRFVYSKSLHIKKHAYQRHGVSLTPRKDIKPLLAVAKKFRKFRKYAWLKEYDSIALQQAVINLDVAFSNCFNPKLKARFPMFKRKHGKLLG
25716..26140                       IS200/IS605 family transposase; STMDT2_RS25240                                       N/A                 LSNHHESLEGFLRKRHSVSKLVVHSLRQNTAASCLTGRLSLSYVMLLVRLRQSWSAKLSRWMVNKITSICRIRNWGSAWIISRYRRGFSVSRIPTCGCRAKPGCCGLVLTLPVAPVVPRKRLKHTCSDRIRRSAG
complement(26267..26917)           SPI-2 type III secretion system effector cysteine hydrolase SpvD; STMDT2_RS23440     N/A                 MRVSGSASSQDIISRINSKNINNNDSNEVKRIKDALCIESKERILYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIHHRQDILSSKNTASPTVGLDSAIVDKIIFGHELNQSYCLNSIDEVEKEILNRYDIKRESSFIISAENYIAPIIGECRHDFNAVVICEYDKKPYVQFIDSWKTSNILPSLQEIKKHFSSSGEFYVRAYDEKHD
complement(27178..27903)           type III secretion system effector phosphothreonine lyase SpvC; STMDT2_RS23445       N/A                 MPINRPNLNLNIPPLNIVAAYDGAEIPSTNKHLKNNFNSLHNQMRKMPVSHFKEALDVPDYSGMRQSGFFAMSQGFQLNNHGYDVFIHARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLLFSEDSPVDKWKVTDMEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFIECLESRLSENGVISGQCPESDVHPENWKYLSYRNELRSGRDGGEMQRQALREEPFYRLMTE
complement(28184..29959)           PHAGE_Pseudo_PaMx28_NC_028931: morphogenesis protein; STMDT2_RS23450; phage(gi971757078)     4.99e-06            MLILNGFSSATLALITPPFLPKGGKALSQSGPDGLASITLPLPISAERGFAPALALHYSSGGGNGPFGVGWSCATMSIARRTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDAPNPVTCFAYGDVSFPQSYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHTAQWLVEESVTPAGEHIYYSYLAENGDNVDLNGNEAGRDRSAMRYLSKVQYGNATPAADLYLWTSATPAVQWLFTLVFDYGERGVDPQVPPAFTAQNSWLARQDPFSLYNYGFEIRLHRLCRQVLMFHHFPDELGEANTLVSRLLLEYDENPILTQLCAARTLAYEGDGYRRAPVNNMMPPPPPPPMMGGNSSRPKSKWAIVEESKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIESIVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS
complement(30141..30908)           outer membrane protein; STMDT2_RS23455                                               N/A                 MNMNQTTSPALSQVETAIRVPAGNFAKYNYYSVFDIVRQTRKQFINANMSWPGSRGGKTWDLAMGQAQYIRCMFRENQLTRRVRGTLQQTPDNGTNLSSSAVGGIQGQAERRPDLATLMVVNDAINQQIPTLLPYHFPHDQVELSLLNTDVSLEDIISESSIDWPWFLSNSLTGDNSNYAMELASRLSPEQQTLPTEPDNSTATDLTSFYQTNLGLKTADYTPFEALNTFARQLAITVPPGGTVDCGYSACQPAV
complement(31082..31246)           PHAGE_Edward_GF_2_NC_026611: putative lysozyme; STMDT2_RS23460; phage(gi764162325)     9.83e-18            MGINALAHATLLKKLNNGDYDGAANEFLKWDHASGQVVPGLTRRRSAERCLFLS
complement(31420..32313)           virulence genes transcriptional activator SpvR; STMDT2_RS23465                       N/A                 MDFLINKKLKIFITLMETGSFSIATSVLYITRTPLSRVISDLERELKQRLFIRKNGTLIPTEFAQTIYRKVKSHYIFLHALEQEIGPTGKTKQLEIIFDEIYPGSLKNLIISALTISGQKTNIMGRAVNSQIIEELCQTNNCIVISARNYFHRESLVCRTSVEGGVMLFIPKKFFLCGKPDINRLAGTPVLFHEGAKNFNLDTIYHFFEQTLGITNPAFSFDNVDLFSSLYRLQQGLAMLLIPVRVCRALGLSTDHALHIKGVALCTSLYYPTKKRETPDYRKAIKLIQQELKQSTF
32921..33958                       PROPHAGE_Escher_EDL933: putative transposase; STMDT2_RS23470; phage(gi15803522)      3.17e-121           MPIIAAIPDEERQLMRKEAQQTHDKNHARRLIAMLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLPLLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIKDPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKHYLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVERWLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLFPGNQQGLAKVER
complement(34147..35172)           PHAGE_Burkho_BcepMu_NC_005882: gp08; STMDT2_RS23475; phage(gi48696918)               2.80e-05            MKYSPASETIFVADNQERTMRVEVMEHYGLTQSIEQAGYYETAHHKQLMKDIKGAIREGRLIAVCGVVGSGKTVTLRRLQQQLLDENKIIVARSLSVDKQSVRLATLINALFYDLAQDKQVQIHKQGERRERELQELVKKGKRPVALFVDEAHDLNGNTLTGLKRLMEVVEDGGGRLSVVLAGHPKLRNDLRRPTMEEIGYRTDIFTLDGITGSQREYIQWLLKTSTGKGKPEDILTTEAVDLLAMKLRTPLQVQLHLTLAMEAGYQTGEKPITATLVESVLSRQLDDLEPTLTRHGYRLKDMVEQFDAKPAEIRALFNNQLDPARTAELRDRMLAVGLPI
complement(35105..36769)           PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: putative transposase A subunit; STMDT2_RS23480; phage(gi966198691)     1.84e-19            MSSRRSAIPSDSLLQLRQRLDRLPPKSPERANQIAATAQLYGISVTTVYRALHLVLKPRTAHRSDHGQPRILPPSELEHYCELIAALKLRTTNKSGRHLSTGRAIQLLEEHGVETVQGLIKSPKGLLRKQTVNRWLSRWRLDQPRLLREPPAVRFQAENSNDCWQFDMSPSDLKHIERPDWVDPARGEPTLMLFSVVDDRSGVAYQEYRCVYGEDAESALRFLFNAMAPKTRSDFPFQGRPKLLYLDNGPVAKNHVFQNVMQSLKVDWLTHTPAGKDGTRTTARSKGKVERPFRTVKEAHETLYHFHKPETELQANEWLWNYLSRYNAQRHRSEKHSRLEDWLANIGQEGVRDMCSWEQYCRFAREPESRKVGVDARITIDGTAWEVEPDMAGETVILLWGLFDEEMYVEFTGETWGPYYPVSGPVPLHRYRTFRRGKAAERADRIHALARQLNIPISALSGSDLRVVSDDTQQRIDALPHQPFDTRKFEYHFPTVIAAKLAIADDLAIPLARMSDEDRAFIDSILTETLNRSEVLARIRDYFRSRQSGEDHAG
complement(36753..37313)           PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; STMDT2_RS23485; phage(gi209901327)     1.13e-39            MALYGYARVSTSDQDLTLQTQILRAAGCEIIRAEKASGSGRTGRSELQLLLEFLRPGDTLMVTRVDRLARSIKDLQDIVYALNQQGVTLRATEQPVDTRSAAGKAFLDMLGVFAEFETNLRRERQMEGIAAAKARGVYRGRKPSIDPAVVYRLYTIEKMGATAIARQLGIGRASVYRALENYEQPA
complement(37520..38260)           carbonic anhydrase; STMDT2_RS23490                                                   N/A                 MEQNQPAQPSRRAILKQTLAVSALSVTGLAALSVPTISFAASLSKEERDGMTPDAVIEHFKQGNLRFRENRPAKHDYLAQKRNSIAGQYPAAVILSCIDSRAPAEIVLDAGIGETFNSRVAGNISNRDMLGSMEFACAVAGAKVVLVIGHTRCGAVRCAIDNAELGNLTGLLDEIKPAIAKTEYSGERKGSNYDFVDAVARKNVELTIENIRKNSPVLKQLEDEKKIKIVGSMYHLTGGKVEFFEV
complement(38915..39403)           hypothetical protein; STMDT2_RS23495                                                 N/A                 MPQDESVVKRAREYFFRHHRYTEEDLESDYQAELCNYRDDTWEAPQRAARLSAAVKRYKTYEMLYFFFQIADEAGLDYTPLVVKRLCAHLFDRQGSQNIIVDIFGQKGRMHRSHDSDPDIIAAVAERYRQQAEDHWQTVLKNIGRVKQDYQKNQNRQKGAGD
39662..40777                       PHAGE_Strept_DT1_NC_002072: putative tail component protein; STMDT2_RS23500; phage(gi29165636)     6.31e-05            MRPATYEPEQIIEAGLALQAEGRNITGFALRNQVGGGNPTRLRQIWDEYQASQSTVVTEPVAELPVEVAEEVKAVSAALSERITQLATELNDKAVRAAERRVAEVTRAAGEQTAQAERELADAAQTVDDLEEKLDELQDRYDSLTLALESERSLRQQHDVEMAQLKERLAAAEENTRQREERYQEQKTVLQDALNAEQAQHKNTREDLQKRLEQISAEANARTEELKSERDKVNTLLTRLESQENALASERQQHLATRETLQQRLEQAIADTQARAGEIALERDRVSSLTARLESQEKASSEQLVRMGSEIASLTERCTQLENQRDDARLETMGEKETVAALRGEAEALKRQNQSLMAALSGNKQTGGQNA
48501..48512                       attR                                                                                 N/A                 CTGTATCACGCT
