gi|00000000|ref|NZ_LN999828.1|  Clostridium sp. AT4 strain AT5, whole genome shotgun sequence. 2148528, gc%: 46.58%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
300285..300974                     PHAGE_Mycoba_Squirty_NC_026588: hypothetical protein; BN3656_RS07680; phage(gi764159933)     1.01e-14            ClostridiumspAT4MSICIKDQIQNMNIVIGCTVGCAYCYARNNVKRWHMIDDFADPEFFPGKLKMMEKKRPQNFLLTGMSDLSGWKPEWRDEVFAKIRENPQHQFLFLTKRPDLLDFDTDLENAWFGITVTRKAELWRIDALRKNVRAKHYHVTFEPLFDDPGTVDLSGINWIVVGTMTGAQSRKTHTEPEWAWSLTNQAHKLGIPVFMKEDLVPIIEDENMIQEIPEEFNKVLEVQKSWKK
300962..301870                     PHAGE_Acidia_virus_NC_007409: hypothetical protein; BN3656_RS07685; phage(gi75750441)     7.94e-19            ClostridiumspAT4MEEVINGILIREVETKNIMTKSSLPVGGYSVNPYVGCTHACKYCYASFMKRFTGHKEEWGTFLDVKHWPEIKNPKKYAGQRVVIGSVTDGYNPQEEQFGNTRKLLEQLIGSDADILICTKSDFVVRDIDLLKKLGRVTVSWSINTLDENFKNDMDSASSIEHRIAAMKQVYEAGIRTVCFVSPVFPGITDFEAIFERVKDQCDLFWLENLNLRGGFKKTIMDYIAGKYPDLVPLYDEIYNKHNRSYFEALEVKAEKMAKKYDCAFVDNEMPYGRVPQGHPVIVDYFYHEEIRGTENTGKRNR
302126..303211                     PROPHAGE_Deinoc_R1: putative transposase; BN3656_RS07690; phage(gi15808035)          2.31e-05            ClostridiumspAT4MSILISIFISGYHGKTTNFAKNSSCHRTTIAHFLNSGKWDDSLLSDTLKCSVIEIIYSEAARTGKPVFCIVDDTIASKTKPSSQALHPIEDAYFHQSHLKGKQDYGHQAVAVMLSCNGIVLNYAFVMYNKSISKIDIVQSIAKELPVPPVMSYFLCDCWYVSEKIINTFAQRGFHTIGALKTNRLLYPSGMKKKLRELAAELSVTHREFDLVTVKKRNYYVYRYEGNLNGIENAVVLLSYPEKVFGNPKALRAFISTNAALSTQEILSWYACRWPIEVFFRQCKEKLALDGYQIRSAQGIKRYWLLMSLAHFMCAVGTGRFCSFETGYHEICDTIQLEKYRYLFQCAKESNDFDSFMKFAV
303412..303426                     attL                                                                                 N/A                 CGAGTTTGAATAGTT
complement(303486..304604)         PHAGE_Clostr_phi3626_NC_003524: putative integrase; BN3656_RS07695; phage(gi20065985)     5.44e-120           ClostridiumspAT4MSVTKDTTGKWMSQVRVKDYTGKTIHKKKRGFTTKKEALEWERDFLNKANADMGMMFQDFVDLYFEDMGHRLKESTIISKRYMVDKKILPVFGKIPINEITPKDIRKWQNGLTAYRDKNRKPYAQTYLRAINNQLTAMFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEFEQFITAVQDKPASYTAFMTMYYTGMRVGELCALTPEDVNLENNTITINKTFQRINGRDVVWPPKTPKSNRVITIPQTLADCLKSYMDKCYEIQPNDRLFPYTKSFLNHEMLRGCKKSGVKKIRVHDLRHSHASLLIEMGCQPLLIADRLGHEKIQTTLNTYSHLYPNKQAEVAQQLENLINGTTVPDSSQLTDVANL
complement(304652..305236)         PHAGE_Clostr_phi3626_NC_003524: putative CI-like transcriptional repressor; BN3656_RS07700; phage(gi20065987)     1.13e-06            ClostridiumspAT4MNIMEVSTIGERIKTLRKKRGYNQKDLANLLGKSLRTIQKYESGEIEVSIAMVNELAKVLDTTSTYLLGHQTGDFKFDSLSDVMECLFQLEKISGLHFSIETKRPPHYDGWQCSITFDGKDKSADQNADMCLFLEEWENNRESFQQYCMDQASYEDWKDKTLAYYASQGVEIEEPENLDTEERLKRKNALFSGK
305450..305644                     PHAGE_Clostr_phi3626_NC_003524: Gp27 protein; BN3656_RS07705; phage(gi20065990)      6.03e-15            ClostridiumspAT4MQINVSYITANDIMEILGVGRSKAYEIVRVMNEELENAGYNIIKGKVPVRYFQKKYYGCEMKME
305641..306294                     PHAGE_Helico_1961P_NC_019512: DNA primase; BN3656_RS07710; phage(gi422935771)        1.63e-07            ClostridiumspAT4MSIFQTVKENVTARQAAEQYGLKISRNGMICCPFHDDRHPSMKVDKGFCCFACGTKGDVITFVADFFHLAPLEAAKKLAEDFRIPVFTDSSKKRNTSKKKEKPKRTLYQTEKKFEEWERESIRILSDYLHLLEEWKVSHAPKMPDEEWKAEFIEACQQTEKINYYLDLLVFGELQDRIEFLLDSGKDVKRIEERMEEYRRNNKEQTGRSIGSEGNEL
306284..307588                     PHAGE_Strept_315.6_NC_004589: putative DNA primase/helicase; BN3656_RS07715; phage(gi28876472)     6.59e-28            ClostridiumspAT4MNSKPYSQEWFEEGQIDEVAFCENFLQRMPLKCINGIFFSYDGMLLDSEVEKEIYRMVKPVLTKGISKKVKQLLEVLKLEAYSEELPVQMDRIHVKNGTYFLSGSFTEMKEFCLNRLPVNYEMKEAKPERWLKFLSELLEEDDIPTLQEYMGYCLIPSNKAQKLLIILGKGGEGKSRIGLVMRKILGTNMNVSNIQKVEHNRFARADLEYRLLMVDDDMKLEALKDTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYRRQIILTVKDVPPDRVDDPYLIEKLQREADDIFLWCLEGLKRLLKNKYRFTISECAKKNLHEAMESENNIIAFMQSSGYIRLEENTTATSKNLYQAYCRWCEDNTEKPMSAKSFSGYLKENEKKYHIHYSTNIPSDNGKNARGFQGIHTQIRIENYR
308019..308903                     MobA/MobL family protein; BN3656_RS07720                                             N/A                 ClostridiumspAT4MLIGRHSFIRQSKLSDVAGRIDYISNPKRQEYLYATYQTEGVTPEFWKNLARENQLDFKASGSAGKCIEGREFIIALPESFVQYRADDVVRLFAETFHKRYGVECIAALHHNKTKTNYHIHLVFSERKMLEQPEVKIATRNMFYDEQGKHRRTKKEILDEQGNLRAGCSIIPKGEVYESHIFTKKDEWFKNKAFTQEVKELFTDTINRYVKEESEKLSVFQQGGVYLATKKIGKNNPKAEEIKADNAARQEWNRTVDVALVEGVPEEDILKIKQEKIIDKMLQSIRTHGWLPDMF
complement(308952..309857)         PROPHAGE_Escher_MG1655: IS150 transposase B; BN3656_RS07725; phage(gi16131429)       1.89e-25            ClostridiumspAT4MFIAIKTDDGRIKGKISFYCKVLHVSRQAFNKFLKAKDTPWKYQALADAMLDICSEDECNDTYGRIRMYQALQLKQPEGVHIPGERTVYRVMAEIGLNHKPKRKPNGITKADREASKSDDLIKRDFAAEKPLEKCMTDMTEIKASDGKLYVSAIFDCYDLAVLGLAMDTNMRATRCEQTLENACKAYPMLRGAILHSDRGTQYTSELYRKAINRYGIVQSMNSAGGRCHDNARCESMWARFKEELLYGRYDPTSMTIEQLKTLIWRYFISYWNNRRICSANGGLPPMVKRQQYYASLQEAA
complement(309857..310198)         PROPHAGE_Xantho_33913: ISxac3 transposase; BN3656_RS07730; phage(gi21231087)         2.39e-07            ClostridiumspAT4MAQNQKSYDNEFKAQAVKLAQEIGGHKAAQELGIPKGTMYTWIKAFKEGRLSANEAVHTPKNALSLNDELIELRKRVKEQDKEIRRLKEENEFLEQASAFFAASRRKSAKNRD
310285..310656                     MobA/MobL family protein; BN3656_RS07735                                             N/A                 ClostridiumspAT4SLKKQLSELRGLFKGKERKSLEGRIELLEDLEKRLHKSLEQIVKREGYPNVQVFQKVYNKAEELIIEYNEELRAWKNQTEQKKEKSLEQPKKASVLEKLHRYQQEGRQQPKRSVKKKSMDRER
310674..310972                     TnpV protein; BN3656_RS07740                                                         N/A                 ClostridiumspAT4MKKTIFEEMGDTYIRQGDYLIPCLTLRRRKNRDLSAYGDKNINVIKNIREQFALLCLQVAGIVILLIKNKHRNALKGLSRNGHRGLQSGKQKIAG
complement(311098..311549)         PHAGE_Oenoco_phiS11_NC_023571: Very-short-patch mismatch repair endonuclease; BN3656_RS07745; phage(gi589286657)     3.21e-15            ClostridiumspAT4MSHDSEIVSKNPQKTHSKDTSIELKLRKVLWHKGYYRKNYKILPGSPDIVLTKYKIAIFCDSDFFHGKDWEILKLRLEKDKNPDYIKKSNVIVPVILKLIKNFYFLVIPLFIFEGKASKNIQMNAFKPLKKLYGIVFFPITLLKFQMNAG
311706..311915                     DNA-binding protein; BN3656_RS07750                                                  N/A                 ClostridiumspAT4MTISEQIKVLCVRSDISVAELARRIGTTPQNFNGKMKRESFTIAELEDIADAVNSSFERKFVLKNGEKV
311915..313123                     PHAGE_Thermu_P7426_NC_009804: C5 cytosine-specific DNA methylase; BN3656_RS07755; phage(gi157265426)     6.42e-40            ClostridiumspAT4MHKNKKQNNYSRYAANRDVISLFSGAMGLDIGLGKAGLNVVIGQDFDAACVKTMKANGHKVLGGDIREIQPQQLLDMTGLSVGEPFLICGGPPCQPFSTAGKRLGINDPRGSLFMDFIRMIDYIRPRFFVMENVKGIMSSPLKHVPLSERDESDPEQKLGTVLDVILSEFDKLDYKTVYGVLDAVNYGVPQFRERFVLIGSRDDEDIFLPIPTHFQMHQDKKYQWQTVRSVIKDLEFDHGECATLSEERLKFLKMVPEGGNWRDLPEDIIPIAMGGAYKSGGGKVGFYRRLSYDQPSPTVVTSPVQKATMMCHPTQNRPLSVKEYARIQQFPDDWVFTGTIAAKYRQIGNAVPVGLAEAIGKTVLSVADKTAVVQTKRFRGTNVHNKIRNAIELGGSLYVVK
317146..317160                     attR                                                                                 N/A                 CGAGTTTGAATAGTT

#### region 2 ####
2041450..2041462                   attL                                                                                 N/A                 TTTCCTCCTCATT
2042222..2042233                   attL                                                                                 N/A                 ATTCATTATGAA
2042229..2044034                   PHAGE_Strept_phiARI0468_2_NC_031923: protector from prophage-induced early lysis; BN3656_RS15935; phage(gi100001)     1.29e-06            ClostridiumspAT4MKKQTKLVAVLSTAALLAIGASMTSFAATGWAEEDGTWVYYNRDGERATDSWKKSGNNWYYLDSDGEMAVDQLIEDGDNYYYVDINGVMASNQWVAIENEDAGEDDEPEHYWYYFQANGKALTNGDNDKVSLKTINGKKYAFDDEGKMLYGWVDEDSAERVDDTDSDGFKEGVYYFGGEDDGAMTTGWLQLDITYDEATNDDYKYTAAAFNDDEDQTRWFYFKSNGKKIFAEDGDRTKDKTINGKKYAFDQYGAMVAEWSLDEDDLGTNPNAFTSNVASSAEVITGKAFDSKYTESWKYFNSVEDGARVSKGWFKVVPAEYLNEDKYNDDEDFWYYADGSGNLYAGEFKTIKGKKYAFRDDGRMLNGLKFIKEDEANQSLSVYADDHDTYNFDNEDDFLDHAAEFYEPNGYKCFYFGDGDDGAMRTNKTNVEIDGENHNFYFEKSGGHKGAGVTGEEDDKLYQSGMLLKADSDDKYIVVEKTSHYEGDKVKYTTYRKLDDAKEFMNADGVQVKDELDGKNGNDAVNIGNGNTKKAEDLSEAYSITYKDKDAKGDKKEYILVNTSGKIVDGKGKNKDGSDYYYVTEKKANGENSIVAIYVED
2044172..2045341                   PHAGE_Strept_phiARI0460_1_NC_031913: protector from prophage-induced early lysis; BN3656_RS15940; phage(gi100001)     8.29e-05            ClostridiumspAT4MIRKRLLCFGLAAVMAASSSLPAFAAINTSLSSTSMENCGAYLFEWRPIDCGNGNYFAILVGGNTITESNVILNRGYDYAYTFDPMTYARPWGTVPDLVNTDGVWAIPENWGSLPEGTQPVLQIILKTNNKNLDTDKRYINVVHLPNGTDTSSLPPEVRKYLINVDGSDAGAYNGTVTPGWQTEADGSKKYLKPDGTYITNGWLTLEDEQYYMDERGVMLKDTVTPDGHYVTPEGKRVSYMPGWFQDTDGWRYIQKNGYYLANSWFQDTDGKYYYFNMAALMAVNTDTPDGYHVDENGVWDGNASTVVKETVNLGPGVATGWEPVDIGWKFRQSDGSYLTNSWKQDPDGKWYYLNEDGWMLKDTTTPDGFYVDENGVWQQDAAAPETAE
2045581..2046432                   PHAGE_Erysip_SE_1_NC_029078: integrase; BN3656_RS15945; phage(gi985758872)           1.72e-23            ClostridiumspAT4MKQLPSNVTGKDAMAETLTAFQIFLQNRDMSPNTISSYMFGARDFLERYGEITPEHISLYKAYLIDHYRPQTVNARIRALNSFLRFQQKENMNTRLLKIQQKKYTEYVISQGDYEYLKQRLLEDEQLTFYYIVRLIAATGVRVSELVEFNCEDVAHGYRNIISKGNKIRRVYIPSGLQIRLKDWLSNEGRKKGSLFLNHSGCRMSVSGVRKQLKVLGCRYGLDPRVVYPHSLRHRFAKNFIESGGDISFLSDLLGHESIETTRIYLRRTSTEQARIFNQVVNW
2046448..2047323                   PHAGE_Erysip_SE_1_NC_029078: integrase; BN3656_RS15950; phage(gi985758872)           1.71e-23            ClostridiumspAT4MGQRKKPKEPEEEFILYLKEHGASEHTVDSCLAALRLFFRLYGEISAENLDAFRRYLMEHYKISTVNSRIYGINRFLAYCSECKNSYETSGKWALPEKNFRLGVIRSQNPPFLDNIISEKDYEKLRDNLKKDRDMKWYFAVRFLACTGARVSELIQIKREHIQLGYMDLYTKGGKVRRIYFPDYLCSEASGWMDSQNMGSGFLFRNRKGGAVSPRWINSQLKLRARQYGIPEETVYPHSFRHRFAKNFLSRCNDIALLADLMGHESIETTRIYLTKSSQEQREIIDSIVTW
2047386..2047397                   attR                                                                                 N/A                 ATTCATTATGAA
2047393..2048229                   PHAGE_Erysip_SE_1_NC_029078: integrase; BN3656_RS15955; phage(gi985758872)           8.65e-19            ClostridiumspAT4MNAITKSSSVRGLEVFLEHLQEKNMSDNTICVYRYAVEQFYRLYPQLTSRNLQLYKVYLLEHYKPQTVNLRLRAINCFIEDKKLRSSPAPMIRIQQKTWLDKIISQADYEYLKQRLLEDEEMVYYFLVRLMAATGVRVSELVTFQVGDVHCGFKDLYSKGDKMRRIYIPSNLRKAFFKWDDFTARTDGALFLNRFGAPITPSGIRSRLKTFAARYGLDPEVMYPHSFRHRFAKNFIEACGDISLLADLLGHESIETTRIYLRRSSAEQYRIVNKVVDW
2048245..2049100                   integrase; BN3656_RS15960                                                            N/A                 ClostridiumspAT4MNVNNGNSLLPEDRIKEFKSMLSENGASENTVRVYAASVREFYKNHQELTVDELQDYKRELLKKYRPATVNTRIYGINQYVKYQKKQWNSGRFPASSCAVPAETISQQYNLKTGLKTEKGTFEGSGSILVLCSAVPGRYRSQSKRIGSDQGRTHCRRLYGSVHERGKNAPYLFSQTALQGNGCVAKTERTVIRIYIYQPLRKAHYSQRDRLTASACKTIPDPANGISPFLPPSVCKEFSKIQYFPAGRPYGTQHRNHAHLSDPFLTGTAKGDPGSNLVA
2049132..2050001                   putative ABC transporter permease; BN3656_RS15965                                    N/A                 ClostridiumspAT4MYQYTWYQWLFIFYLYCFLGWIFESSYVSLKERRPVNRGFLRLPLLPLYGTGAVMMLWVSLPLREHLLLVFLAGMTASTALEYITGWCMEQLFRVRYWDYSSQAFNLHGYICLSSSIAWGVLTLLLTEVIHKPVEFWIVNTSQALLLLWVLFISVFFILDTIQSVQAALNLAKVLDSMTHMLAELEDIQVQLALLKAETNQKLANIQEEASHKLAAAKAEAALYRTSKEEQIRSLTRRMSELAHQRQHMALHIDLYQRGILKRNPGARSTRFETAFKELREIAEKQLHK
complement(2050064..2051800)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; BN3656_RS15970; phage(gi100155)     2.28e-06            ClostridiumspAT4MKDYMKIYQEWLSNPYFDEATKAELKAIEGDENEIKERFYMDLEFGTAGLRGIIGAGINRMNIYVVRRATQGLANYIIKQGAADKGVAIAYDSRNMSPEFAMEAAMTLAANGIKAYKFESLRPTPELSFAVRELGCVAGINITASHNPPEYNGYKVYWEDGAQFTPPHDKGVTEEVLAIEDLSSVKTTDEASAIAAGKYEVIGKEIDDKYIAQVKAQVVNQKAIDEMQDQIRIVYTPLHGTGNIPARRVMKEIGFTHVYVVPEQELPDGNFPTVSYPNPEAKEAFELGLKLAKEKDADLVLATDPDADRLGVYVKDAKSGEYIPLTGNMSGSLLCEYVLSQKQAEGKIPTDGQVVKSIVSTNLIDAVAKAYGAELIEVLTGFKWIGKQILKNETTGTGTYLFGMEESYGCLIGTYARDKDAISATAALCEAAAYYKQKGMTLWDAMVAMYEKYGYYKDSVKSIGLSGIEGLAKIQSIMETLRNNTPAEVGGYKVVSARDYKLDTIRDMETGAVKPTGLPASNVLYYDLEDGAWICVRPSGTEPKIKFYFGVKGTSLEDADQKEADLGAAVMAMVDKMM
2061260..2061272                   attR                                                                                 N/A                 TTTCCTCCTCATT
