gi|00000000|ref|NC_000000|  Mannheimia haemolytica strain 232020MH isolate swab isolate 1 [asmbl_id: NC_000000].24522, gc%: 42.06%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(102..761)               PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CI repressor; AVJ39_RS02975; phage(gi971749642)     1.09e-162           MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIANYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTEAFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVAAVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSYL
891..1097                          PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: Cro repressor; AVJ39_RS02980; phage(gi971749643)     3.63e-43            MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVAQKIVEGLNELGANVRIDDVFPVGN
1118..1378                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CII protein; AVJ39_RS02985; phage(gi971749644)     4.68e-56            MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTFADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT
1687..2556                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: replication protein O; AVJ39_RS02990; phage(gi971749646)     0.0                 MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRSGVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRENILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITKEKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERKRSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYIIRSKTFYKTWEDSL
2553..3914                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: helicase; AVJ39_RS02995; phage(gi971749647)     0.0                 MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATFQLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQYHQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGYLELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNIIENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQNQQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGESMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNKDGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYGAMQ
3911..4447                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: methyltransferase; AVJ39_RS03000; phage(gi971749648)     3.83e-131           MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICDLPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGLGRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRIELFARNKTQGWDVWGDEV
4538..4753                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03005; phage(gi971749649)     3.46e-48            MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNISRDSTLNRTKSCGYFSKEEVKKVNGTQR
4737..5243                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03010; phage(gi971749650)     1.79e-123           MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALVSLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNLTVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENRINQLYSFF
5293..5505                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03015; phage(gi971749651)     2.57e-29            MKKNVIRYWLSVPFRIIAVLFFLVILTVRYVGYLLIYPLAFFAAVGSFIVFCQWTYQEWLYYFKRGFAPI
5551..5745                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03020; phage(gi971749652)     5.05e-39            MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQLGFNITCYWLWFISVMRNVI
5873..6442                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: NinG protein; AVJ39_RS03025; phage(gi971749654)     2.37e-137           MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAKRKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYDAGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKDHPPLKLTIEQIKDLIKVYKAKCKELERVT
6432..6905                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: antitermination protein Q; AVJ39_RS03030; phage(gi971749655)     1.09e-110           MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP
7133..7208                         tRNA                                                                                 N/A                 AAGGGTGTAGCTCAGTTGGTAGAGCAGCGGTCTCCAAAATCGTTGGTTGTTGGTTTGAGTCCAACCACCCTTTCCA
7225..7410                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03040; phage(gi971749657)     5.62e-39            MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKLGIKAPPNFPFPRVEDLS
complement(7434..7661)             PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; AVJ39_RS03045; phage(gi970580078)     5.54e-24            NKLAEGKNDIYSVPPEAFNLASRHYYWQMDKFSYFGSAERNLIYVEMASPRHSDLEIFLDLLHRFLTEYLVVPS
7749..7994                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: holin; AVJ39_RS03050; phage(gi971749660)       1.89e-52            MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIAGLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE
7987..8556                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: endolysin; AVJ39_RS03055; phage(gi971749661)     3.41e-141           MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEGCRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFNGKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDFIRASGKVLNGLVIRREKEKALCLTGLVAR
8529..8879                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: lytic protein Rz; AVJ39_RS03060; phage(gi971749662)     3.47e-79            MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQQKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVADSIKRLHQQNNHKH
complement(9070..9255)             PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03065; phage(gi971749664)     6.41e-39            MGNKKTSNTANVRGFVLYKSHHLGISSVFYPTNPETIAKLCNIYFPSKQKGSCYAPIFNSG
9449..9973                         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: terminase, small subunit; AVJ39_RS03070; phage(gi971749587)     2.07e-123           MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYSEKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTETDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMVIELIAPSLDDESTD
9957..11177                        PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: terminase large subunit; AVJ39_RS03075; phage(gi971749588)     0.0                 MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSAYKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRISYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPENRGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVEKWKGSVEDGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYALTPLMQVKSAKGVLL
11174..12550                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: portal protein; AVJ39_RS03080; phage(gi971749589)     0.0                 MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAYKRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEADRRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDVTADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYNKLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIKKINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLASDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEKEKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDENQATADSDK
12504..13442                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: head morphogenesis protein; AVJ39_RS03085; phage(gi971749590)     0.0                 MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSIKQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDSYIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLSDELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQEAEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQSVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK
13429..14799                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03090; phage(gi971749591)     0.0                 MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMNDGLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGKVLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKKYSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKLFDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKYKRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLNDDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQAAMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQEEKGNE
14792..15226                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03095; phage(gi971749592)     1.18e-101           MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADLKGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQAGGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK
15241..16230                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03100; phage(gi971749593)     0.0                 MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDVWAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAKTDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLALNGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSPVTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRSDVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS
16242..16475                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03105; phage(gi971749594)     6.35e-45            MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATPSDHADGETGETGETGETGETGETGQKGKKDKGK
16478..16855                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03110; phage(gi971749595)     8.15e-87            MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSGYSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDPKGCAESLLPKDKVVGFFDVVGGC
16855..17199                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03115; phage(gi971749596)     1.15e-80            MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRKRARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFDRNRDDFALITGG
17201..17569                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03120; phage(gi971749597)     9.51e-86            MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAHYTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLTSALNESKATIKSIVKEELSL
17566..17946                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03125; phage(gi971749598)     2.78e-89            MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNSGSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPAPIFTEDNRMIFRLPLRIISTNQEE
17950..18432                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: major tail protein; AVJ39_RS03130; phage(gi971749599)     7.98e-114           MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTKSWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANAVKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
complement(18472..18888)           PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: toxin-antitoxin system antitoxin component HicB; AVJ39_RS03135; phage(gi971749600)     2.87e-97            MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLLSCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNIRPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG
complement(18944..19120)           PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: toxin-antitoxin system antitoxin component HicA; AVJ39_RS03140; phage(gi971749601)     1.53e-34            MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELKTGLVEGVKKQLGLK
19216..19887                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03145; phage(gi971749602)     2.64e-166           MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKIYALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISLLIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFDAVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYEKRRAA
complement(19902..20135)           PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03150; phage(gi971749603)     7.29e-52            MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNARSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF
20304..20762                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03155; phage(gi971749604)     1.27e-108           MKKMIVFVASVLSSFVIASDWEIIEAAQNKVKAELIRKSEKKAELCLNVAQAVLITNQKVQKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIESDYIYQRATKDFYFNYNGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK
20830..21220                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; AVJ39_RS03160; phage(gi971749605)     2.63e-77            MDVKVINVLLIILFSAIVIGLFLFQESRLRDPNNHSVIYLEQIQEMCSLDKIGSYQIDFVRQSGNEYKESILVNDFELAIKTVLSTLRRAKIDSVPVISNTLIYYPPSFLQRKRSRRKEIRIDKDCKNLA
21307..23802                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: tail length tape measure protein; AVJ39_RS03165; phage(gi971749606)     0.0                 MSQAVFYLNNFKELFMTVEVGGVVITADLEFENLLRDTQKVDKAMDDIGKSTLKAEKGLKGLETQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQMGSNASTVIAQQGSQILSIFGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAAQKNLSEVVTQTESGVSALSAKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKAFEQFDGFFGSFTNSSQSIRNAIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDSVTSEMSKTLGITQSEALGLIKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNKLTRTINDNSVSALDAETSVRLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKAATIGKTERETAKYAATLLATTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTADAKAAREAEAAAKKSAQAKKQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGAAATKEQREEAEKLAQSIYGATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILYPQKIMEAEAARAAIEEQYRQQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGLLNGTMSVRDAFASIANTILNSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKALAASFAPAASMVSLATQGANAIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGENNQPEIFKASNGMQYMIPGQSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASANQAAVAKALSNQIKASVRLELQSQMRAGGVLAR
23806..24135                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: minor tail protein M; AVJ39_RS03170; phage(gi971749607)     1.88e-77            MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKYQGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFTLNFDEVI
24135..24522                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: minor tail protein L; AVJ39_RS03175; phage(gi971749608)     3.62e-92            MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEIFRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVEDFGQPVEAKVSSEETVDGNIQMTVELL
