gi|00000000|ref|NC_000000|  Mannheimia haemolytica strain 232020MH isolate swab isolate 1 [asmbl_id: NC_000000].46338, gc%: 41.16%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
44..286                            PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05330; phage(gi109289959)     2.15e-55            MTKKHYCTGWRSAPANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRAWLFWLVVRAFGWRFYKNKEIKIEK
276..470                           PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; AVJ39_RS05335; phage(gi971741551)     3.62e-12            MRNKDNTASKQASKQASKQASKQASKQSVAQFKQAPLPFPAAVVTVVQCLRKSRKSVGVFGMRL
609..622                           attL                                                                                 N/A                 AGCGGTTATTTTTT
672..1853                          PHAGE_Mannhe_phiMHaA1_NC_008201: major tail sheath protein; AVJ39_RS05340; phage(gi109289960)     0.0                 MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAETFPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANIVGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISDNGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTVGWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLATDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDPRILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKAL
1862..2368                         PHAGE_Mannhe_phiMHaA1_NC_008201: major tail tube protein; AVJ39_RS05345; phage(gi109289961)     1.84e-120           MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL
2447..2761                         PHAGE_Mannhe_phiMHaA1_NC_008201: tail protein E; AVJ39_RS05350; phage(gi109289962)     4.90e-69            MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVDEWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEILA
2785..2901                         PHAGE_Burkho_phiE12_2_NC_009236: gp30, phage tail protein, P2 GpE family; AVJ39_RS05355; phage(gi134288723)     1.35e-08            MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES
2965..3312                         PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05360; phage(gi109289963)     4.15e-76            MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFISLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLISYIIYHSQTVTIK
3314..3751                         PHAGE_Mannhe_phiMHaA1_NC_008201: tail protein U; AVJ39_RS05365; phage(gi109289964)     1.96e-103           MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPKSQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVIDRISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI
3751..4989                         PHAGE_Mannhe_phiMHaA1_NC_008201: tail protein; AVJ39_RS05370; phage(gi109289965)     0.0                 MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHRLIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDELTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFENEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRITRSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVKRGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSAINACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSLNKGGGFTTALEMELKPKSED
complement(5172..5978)             PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical bacteriophage protein; AVJ39_RS05375; phage(gi109289966)     0.0                 MNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQKLREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGDYEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKKTAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR
complement(6013..6273)             PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05380; phage(gi109289967)     1.10e-56            MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQCNAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN
complement(6373..6783)             PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05385; phage(gi109289968)     1.79e-74            MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPVQADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLYDHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ
complement(6801..7319)             PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05390; phage(gi109289969)     1.55e-123           MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVITLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFKQARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEEFLYMLETGVVPD
complement(7323..8009)             PHAGE_Mannhe_phiMHaA1_NC_008201: CI repressor; AVJ39_RS05395; phage(gi109289970)     2.44e-169           MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNPTRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNGSFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTTKSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKVEFMQGHIRRV
8133..8345                         PHAGE_Mannhe_phiMHaA1_NC_008201: Cro repressor; AVJ39_RS05400; phage(gi109289971)     2.14e-43            MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYLLKIEAATNGQVTIREICEELGNATAK
complement(8444..8689)             PHAGE_Mannhe_vB_MhM_587AP1_NC_028898: hypothetical protein; AVJ39_RS05405; phage(gi971753899)     1.15e-50            MNTEDQIIELTVEVENLRHQLNAKNIILDDLKGRLTDYQRKRLDRLFERSRRQYLNDLDLEEEQAEALEAICNELESFLAN
8822..9094                         PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05410; phage(gi109289973)     5.07e-62            MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQSQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD
9177..9509                         PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05415; phage(gi109289974)     9.81e-72            MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLADEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKKVLGSKGNP
9522..9815                         PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05420; phage(gi109289975)     1.01e-68            MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAFLQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD
9967..10209                        PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05425; phage(gi109289976)     1.09e-53            MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIAYMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR
10206..10538                       PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05430; phage(gi109289977)     9.61e-79            MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERVVLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCLTYNGTFIK
10535..12895                       PHAGE_Mannhe_phiMHaA1_NC_008201: replication protein A; AVJ39_RS05435; phage(gi109289978)     0.0                 MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQPYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKAEMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQDAEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIEQNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMTCEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMIIANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADATPHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVKYVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRRLGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALYTMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEVKRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRVTEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN
12908..13240                       PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05440; phage(gi109289979)     2.23e-74            MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFREGEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEMKLGLLEAK
13240..13692                       PHAGE_Mannhe_phiMHaA1_NC_008201: single-stranded DNA binding protein; AVJ39_RS05445; phage(gi109289980)     3.96e-108           MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVKKESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQMQMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF
13703..14035                       PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical bacteriophage protein; AVJ39_RS05450; phage(gi109289981)     7.80e-59            MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFDDVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAVLGGKLNEK
14025..14294                       PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05455; phage(gi109289982)     1.14e-59            MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEESGLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ
14269..14559                       PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05460; phage(gi109289983)     2.32e-66            MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAYFGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK
14559..14776                       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: methyltransferase; AVJ39_RS13820; phage(gi971749623)     3.15e-11            MIKKIILDACCGSRMFHFNKHNPSVLFADNRESLYRKFMLSNTNLSMGIKAVNITKRIGWHLRWIITIICAA
complement(14829..15011)           PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; AVJ39_RS05470; phage(gi109289984)     2.14e-34            MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQNQLIIQAIQQFKQNNP
complement(15289..16287)           PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; AVJ39_RS05475; phage(gi109289985)        0.0                 MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQIDAGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHLRQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ
complement(16515..16591)           tRNA                                                                                 N/A                 GCGACTATAGCTCAGTTGGTTAGAGCACCACCTTGACATGGTGGGGGTCACTGGTTCGAGTCCAGCTAGTCGCACCA
complement(16655..17455)           PHAGE_Salmon_SP_076_NC_021782: NinI protein; AVJ39_RS05485; phage(gi525972760)       2.20e-12            MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGEDSLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQPLVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWSEDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKNIIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK
complement(17547..19523)           PHAGE_Lactoc_Q54_NC_008364: putative ribonuclease; AVJ39_RS05490; phage(gi115304286)     1.98e-29            MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYFIPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVDHPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAPWWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIKQNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQSEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQMIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELAERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYATWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYARYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELALYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII
19683..19961                       PHAGE_Entero_lambda_NC_001416: Bor protein precursor; AVJ39_RS05495; phage(gi19263395)     2.35e-22            MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQKQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN
19986..20282                       PHAGE_Entero_933W_NC_000924: Bor protein precursor; AVJ39_RS05500; phage(gi9632515)     6.20e-15            MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFFIGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK
22750..22763                       attR                                                                                 N/A                 AGCGGTTATTTTTT
