gi|00000000|ref|NZ_QWTF01000096.1|  Shigella flexneri strain DMB SH20103 15066, gc%: 49.16%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(29..301)                PHAGE_Entero_P1_NC_005856: InsA; CUA60_RS17055; phage(gi46401643)                    3.06e-61            ShigellaflexneriVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR
367..573                           hypothetical protein; CUA60_RS25295                                                  N/A                 ShigellaflexneriMFAISRESIVYLYFISACGGGIAAAMYSFFFISSINSEIQRFKSILLHRAEANKKTKEFIDSLNKKAD
complement(594..956)               PHAGE_Shigel_SfIV_NC_022749: antitermination Q; CUA60_RS17070; phage(gi557307572)     3.95e-83            ShigellaflexneriMRDIQMVLERWGGWAASDNSGVDYSPIAAGFKGLLPQTGKNRLSCTDADGLIIEGCLARLKKKKPYEHSLLVAHYLYGLSKRKIAKEKKKDEKLIRIEIKMAEGFIEGCLSMLDIRLEMD
complement(974..1963)              PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17075; phage(gi557307571)     0.0                 ShigellaflexneriMRALLTPEIAPRMGIVLFRPGSELMPLFMQGRVLLEPEPERYSSFASGAVPAASQPLADDPAVRAVFRNEAVIRRAGGVECLESWLLREKGCQWPHSDWHSENMTTMRHAPGAIRLCWHCDNQLRDQFTERLESMATDNCARWVLSVVRRDLGFDDSHVVTMPELCWWLVRNDLADALPESAARKALRLPKPVVPSVTRESDLVPSVPATSIIQDKAKKVLALKVDPESPDSFMLRPKRRRWVNEKYTRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHDELHADTVAFEEKYGSQLELIFRFIDRALATGVLA
complement(1971..2786)             PHAGE_Shigel_SfIV_NC_022749: KilA-N domain family protein; CUA60_RS17080; phage(gi557307570)     0.0                 ShigellaflexneriMNQLLVIDGVSVRQYFESNYCLNDLQKAALLAAGENRSSRSLEVHEFMRRPETKALVELLEEETTGDSRSIPVITIQGRNGGTYVCKELVYAYAMWISPAFSLKVIRTFDALHNSSPEETTSDKIKSGVILLESAAKTLNLSNSSKLGAYQKLSKVAGLPELMPIYAIDAPADAPDGSSRPTLSLSALLKQYGIRLTANQAYHQMVKLGIVEQRERYSRTSINNIKKFWSLTAKGCMFGKNITSPANPRETQPHFFESRFPELLKLLDTVH
complement(2949..3344)             PHAGE_Shigel_SfII_NC_021857: RusA family protein; CUA60_RS17085; phage(gi526244679)     5.27e-85            ShigellaflexneriMKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGKFQSAACAAIVEQLRRLPKPTSAPASVEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISKYEKASCKLATR
complement(3341..3667)             PHAGE_Shigel_SfIV_NC_022749: regulation protein; CUA60_RS17090; phage(gi557307569)     5.47e-75            ShigellaflexneriMTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGVITIKRGVARGITLHTVVKDDDSEAVGIIRSLLAGEENARLRAAHWLHERGLKV
complement(3667..4161)             PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17095; phage(gi557307568)     1.27e-119           ShigellaflexneriMIMSLLNEVQKYIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFPRLTERAQEAEPQPVRETRPVRNFYVGTNDPREILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARREQCLRKSSKRAVSSDEWYLSGNYVGA
complement(4158..5084)             PHAGE_Shigel_SfIV_NC_022749: replication protein; CUA60_RS17100; phage(gi557307567)     0.0                 ShigellaflexneriMSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGNRNASNVYQLNVAKLQAAAFSQLSDSDPSKSDPSKFDASKSGKKAGFHPSESGGDPSVKSKHDPSDKKTSRPDASQPDTQTAEQEFLTRHPDAVVFSPKKRQWGTQDDLTCAQWLWKKIIALYEQAAECDGEVVRPKEPNWTAWANEIRLMCVQDGRTHKQICEMYSRVSRDPFWCRNVLSPSKLREKWDELSLRLSPSVSTYTEKREDPYFKASYDNVDYSQIPAGFRG
complement(5074..5253)             PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; CUA60_RS17105; phage(gi100119)     1.37e-13            ShigellaflexneriMRQVNRWFKDHYGVPVRVIRWEPETQRVIYLREGYEHECFSPLEQFRRKFREIEVGHEH
complement(5429..5980)             PHAGE_Shigel_SfIV_NC_022749: DNA binding transcriptional regulator; CUA60_RS17110; phage(gi557307565)     2.00e-134           ShigellaflexneriMGKHHWKVEKQPEWYVKAVRKTIAKLPGGYAEAADWLDVTENALFNRLRADGDQIFPLGWAMILQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISESNDARECAAPGAVACRDCGETNA
complement(6024..6224)             PHAGE_Shigel_SfIV_NC_022749: Cro; CUA60_RS17115; phage(gi557307564)                  1.47e-42            ShigellaflexneriMKAYWDSLTKEQQGELAGKVGSTPGYLRLVFNGYKKASFVLAKKLEQCTSGAITKSDLRPDIYPKD
6315..6989                         PHAGE_Shigel_SfIV_NC_022749: repressor / cI; CUA60_RS17120; phage(gi557307563)       3.17e-168           ShigellaflexneriMKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
7224..7430                         hypothetical protein; CUA60_RS17125                                                  N/A                 ShigellaflexneriMHKTEPKIVAPGYTNEEIYEWMAKKLAAINQLREVLSYRQETIDSLKKLDQEITVLSQDVTLDIVQTN
complement(7402..7836)             PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17130; phage(gi557307562)     7.21e-104           ShigellaflexneriMSGNIYTLYKSHCENVGKYRGIEISGVVSSVEISKVESRATLLTLLDLVLHEHRKKFGTPYNQLNGKKALVHLILMKHHWMPKQINEMKFDELLLSIQDELTLDKISVTAQKFLDYRDWRSQIHHFDDFDENEWDPNLSAQYLK
7980..8290                         hypothetical protein; CUA60_RS24715                                                  N/A                 ShigellaflexneriVVNAAQRTRVKVEADSRPSVDTHPSGVQPSPGTGRHPAPQLYAVCSPGGTSLYPCFRLVPSFLQNREEHHRTTGSPNPSGRLPPQVFFSVLWRNSALQGRYGA
8287..8667                         PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17145; phage(gi557307560)     3.37e-86            ShigellaflexneriMMRSSKMASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRVKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGR
8733..9557                         PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17150; phage(gi557307559)     0.0                 ShigellaflexneriMSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAVRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEEMANEFRDLLVEKFKDSKVETFIGTFTA
9685..10221                        PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17155; phage(gi557307558)     5.80e-132           ShigellaflexneriMSFIKTFSGKHFYYDRINKDDIDINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKQMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNELSELRKCA
10212..10574                       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17160; phage(gi557307557)     4.34e-85            ShigellaflexneriMRMNVFEMEGFLRGRCVPRDLKVNETDAEYLVRKFDALEAKCAAQENKVIPVSTELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
10574..10879                       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; CUA60_RS17165; phage(gi557307556)     8.64e-69            ShigellaflexneriMTTFTDKELIKEIKERISSLDVRDDIERRAYEIALLSLEVEPDEREAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIVWQQRAGIHFSTMSQQEVK
11106..12269                       PHAGE_Shigel_SfIV_NC_022749: integrase; CUA60_RS17175; phage(gi557307554)            0.0                 ShigellaflexneriMSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSKNKEGTNDV
