Submission Results

Sequence Name: Not Available

GenBank Accession Number: NZ_UKWX01000005.1

GenInfo (GI) Number: 0000000000

Download Results: NZ_UKWX01000005.1.PHASTER.zip

gi|00000000|ref|NZ_UKWX01000005.1| Klebsiella pneumoniae strain EuSCAPE_IT397, whole genome shotgun 332216, gc%: 56.54%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.7Kbintact11063487-49223 info_outlinePHAGE_Cronob_ENT47670_NC_019927(14)53.53%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_UKWX01000005.1| Klebsiella pneumoniae strain EuSCAPE_IT397, whole genome shotgun 332216, gc%: 56.54%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 69 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(487..753)PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; D2W23_RS14060; phage(gi985757721)1.48e-08Showinfo_outline
2complement(994..3471)PHAGE_Cronob_ENT47670_NC_019927: putative tail protein; D2W23_RS14065; phage(gi431810495)0.0Showinfo_outline
32019..2032attL0.0Showinfo_outline
4complement(3458..3853)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14070; phage(gi431810526)3.90e-45Showinfo_outline
5complement(3850..4320)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14075; phage(gi431810518)1.10e-34Showinfo_outline
6complement(4320..4739)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14080; phage(gi431810519)6.42e-43Showinfo_outline
7complement(4839..7490)PHAGE_Salmon_IME207_NC_031924: RNA ligase 1; D2W23_RS14085; phage(gi100066)1.16e-174Showinfo_outline
8complement(7545..7946)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: hypothetical protein; D2W23_RS14090; phage(gi399528778)5.42e-36Showinfo_outline
98087..8560PHAGE_Edward_GF_2_NC_026611: hypothetical protein; D2W23_RS14095; phage(gi764162267)2.97e-20Showinfo_outline
10complement(8604..9056)hypothetical protein; D2W23_RS141000.0Showinfo_outline
11complement(9053..9625)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; D2W23_RS14105; phage(gi985761316)2.25e-08Showinfo_outline
12complement(9935..10633)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14110; phage(gi431810508)1.26e-87Showinfo_outline
13complement(10684..11436)PHAGE_Cronob_ENT47670_NC_019927: major tail subunit; D2W23_RS14115; phage(gi431810520)2.70e-43Showinfo_outline
14complement(11505..11894)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14120; phage(gi431810530)3.63e-46Showinfo_outline
15complement(11891..12331)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14125; phage(gi431810532)1.26e-42Showinfo_outline
16complement(12334..12681)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; D2W23_RS14130; phage(gi971749596)2.65e-34Showinfo_outline
17complement(12681..12854)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: hypothetical protein; D2W23_RS14135; phage(gi399528768)1.37e-18Showinfo_outline
18complement(12854..13234)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14140; phage(gi431810531)1.10e-39Showinfo_outline
19complement(13237..13524)PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; D2W23_RS14145; phage(gi970580015)1.34e-18Showinfo_outline
20complement(13564..14595)PHAGE_Sinorh_phiLM21_NC_029046: coat protein; D2W23_RS14150; phage(gi981221077)2.23e-18Showinfo_outline
21complement(14608..15042)PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; D2W23_RS14155; phage(gi971749592)1.36e-37Showinfo_outline
22complement(15042..16421)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14160; phage(gi431810499)3.36e-159Showinfo_outline
2316444..16788hypothetical protein; D2W23_RS141650.0Showinfo_outline
24complement(16789..17799)PHAGE_Cronob_ENT47670_NC_019927: phage head morphogenesis; D2W23_RS14170; phage(gi431810507)8.60e-150Showinfo_outline
25complement(17726..19195)PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; D2W23_RS14175; phage(gi431810500)0.0Showinfo_outline
26complement(19208..20680)PHAGE_Cronob_phiES15_NC_018454: terminase large subunit; D2W23_RS14180; phage(gi401817592)0.0Showinfo_outline
27complement(20680..21195)PHAGE_Cronob_phiES15_NC_018454: terminase small subunit; D2W23_RS14185; phage(gi401817591)2.55e-88Showinfo_outline
2821224..21691hypothetical protein; D2W23_RS141900.0Showinfo_outline
29complement(21789..22040)PHAGE_Entero_SfV_NC_003444: putative Rz1 lytic protein; D2W23_RS29225; phage(gi19549039)5.92e-34Showinfo_outline
30complement(21925..22314)PHAGE_Entero_SfV_NC_003444: putative Rz lytic protein; D2W23_RS14195; phage(gi19549038)7.99e-36Showinfo_outline
31complement(22311..22805)PHAGE_Entero_phi80_NC_021190: lysozyme; D2W23_RS14200; phage(gi824479636)3.66e-112Showinfo_outline
32complement(22783..23007)PHAGE_Entero_phi80_NC_021190: holin; D2W23_RS14205; phage(gi824479635)1.37e-45Showinfo_outline
33complement(23278..23354)tRNA0.0Showinfo_outline
34complement(23360..23435)tRNA0.0Showinfo_outline
35complement(23441..23516)tRNA0.0Showinfo_outline
36complement(23523..23597)tRNA0.0Showinfo_outline
37complement(23774..24274)PHAGE_Escher_HK639_NC_016158: Q antitermination protein; D2W23_RS14230; phage(gi356870666)7.70e-113Showinfo_outline
38complement(24271..24411)PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; D2W23_RS14235; phage(gi169257245)1.05e-12Showinfo_outline
39complement(24408..25043)PHAGE_Entero_phi80_NC_021190: DNA junction-specific endonuclease Rap; D2W23_RS14240; phage(gi824479632)4.15e-113Showinfo_outline
40complement(25036..25206)PHAGE_Escher_HK639_NC_016158: NinE; D2W23_RS14245; phage(gi356870663)5.69e-21Showinfo_outline
41complement(25212..25808)PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; D2W23_RS14250; phage(gi423262437)5.14e-63Showinfo_outline
42complement(26000..26401)hypothetical protein; D2W23_RS142550.0Showinfo_outline
43complement(26380..26796)HEPN domain-containing protein; D2W23_RS142600.0Showinfo_outline
44complement(27073..27651)PHAGE_Escher_HK639_NC_016158: hypothetical protein; D2W23_RS14265; phage(gi356870659)7.47e-12Showinfo_outline
45complement(27815..27976)PHAGE_Escher_RCS47_NC_042128: baseplate hub assembly protein; D2W23_RS14270; phage(gi100106)6.83e-05Showinfo_outline
46complement(28258..28467)hypothetical protein; D2W23_RS142750.0Showinfo_outline
47complement(28569..28862)PHAGE_Aeromo_pIS4_A_NC_042037: hypothetical protein; D2W23_RS14280; phage(gi100006)2.62e-16Showinfo_outline
48complement(28865..29167)PHAGE_Serrat_phiMAM1_NC_020083: putative transcriptional regulator-HTH domain; D2W23_RS14285; phage(gi440789434)9.84e-06Showinfo_outline
49complement(29167..29943)PHAGE_Entero_Tyrion_NC_031077: ssDNA binding protein; D2W23_RS14290; phage(gi100044)2.57e-122Showinfo_outline
50complement(29940..30668)PHAGE_Pectob_ZF40_NC_019522: putative replication protein; D2W23_RS14295; phage(gi422936654)1.80e-56Showinfo_outline
51complement(30802..31023)PHAGE_Entero_mEp213_NC_019720: CII protein; D2W23_RS14300; phage(gi428782643)9.86e-10Showinfo_outline
52complement(31063..31296)PHAGE_Escher_HK639_NC_016158: cro; D2W23_RS14305; phage(gi356870651)2.02e-25Showinfo_outline
5331401..32090PHAGE_Salmon_BTP1_NC_042346: RegA; D2W23_RS14310; phage(gi100039)3.06e-117Showinfo_outline
5432113..32232hypothetical protein; D2W23_RS143150.0Showinfo_outline
5532453..33525PHAGE_Salmon_ST160_NC_014900: regulatory protein; D2W23_RS14320; phage(gi318065923)1.53e-91Showinfo_outline
56complement(33564..33767)PHAGE_Salmon_118970_sal4_NC_030919: exonuclease A; D2W23_RS14325; phage(gi100018)4.05e-28Showinfo_outline
5734195..34419PHAGE_Escher_P13374_NC_018846: host killing protein; D2W23_RS14330; phage(gi410491620)1.37e-06Showinfo_outline
5834409..34843PHAGE_Erwini_vB_EamP_S6_NC_019514: gp055; D2W23_RS14335; phage(gi422935894)8.12e-51Showinfo_outline
5934914..35198PHAGE_Escher_HK639_NC_016158: hypothetical protein; D2W23_RS14340; phage(gi356870640)2.59e-52Showinfo_outline
6035214..36059PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; D2W23_RS14345; phage(gi560186064)6.30e-80Showinfo_outline
6136056..36736PHAGE_Cronob_ENT47670_NC_019927: exonuclease; D2W23_RS14350; phage(gi431810511)2.49e-148Showinfo_outline
6236733..36891PHAGE_Entero_933W_NC_000924: hypothetical protein; D2W23_RS14355; phage(gi9632478)9.04e-16Showinfo_outline
6336888..37415PHAGE_Entero_933W_NC_000924: putative DNA N-6-adenine-methyltransferase; D2W23_RS14360; phage(gi9632500)1.44e-72Showinfo_outline
6437412..37630PHAGE_Escher_PA28_NC_041935: hypothetical protein; D2W23_RS14365; phage(gi100017)6.82e-16Showinfo_outline
6537632..37811PHAGE_Escher_PA28_NC_041935: hypothetical protein; D2W23_RS14370; phage(gi100016)1.74e-15Showinfo_outline
6637850..38089PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; D2W23_RS14375; phage(gi157165989)9.00e-16Showinfo_outline
6738102..38437PHAGE_Cronob_ENT47670_NC_019927: excisionase; D2W23_RS14380; phage(gi431810536)2.35e-09Showinfo_outline
6838314..39477PHAGE_Escher_HK639_NC_016158: integrase; D2W23_RS14385; phage(gi356870629)0.0Showinfo_outline
6949223..49236attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 332216 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download