Submission Results

Sequence Name: Not Available

GenBank Accession Number: NZ_UKWY01000005.1

GenInfo (GI) Number: 0000000000

Download Results: NZ_UKWY01000005.1.PHASTER.zip

gi|00000000|ref|NZ_UKWY01000005.1| Klebsiella pneumoniae strain EuSCAPE_IT388, whole genome shotgun 295663, gc%: 58.22%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.6Kbintact15051229827-269469 info_outlinePHAGE_Salmon_Fels_2_NC_010463(37)52.76%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_UKWY01000005.1| Klebsiella pneumoniae strain EuSCAPE_IT388, whole genome shotgun 295663, gc%: 58.22%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
1229827..230711PHAGE_Burkho_phi1026b_NC_005284: gp58; D2W20_RS09255; phage(gi38707948)1.77e-07Showinfo_outline
2230836..231636hypothetical protein; D2W20_RS092600.0Showinfo_outline
3231913..231957attL0.0Showinfo_outline
4complement(232071..233621)hypothetical protein; D2W20_RS092650.0Showinfo_outline
5complement(233618..234643)PHAGE_Salmon_Fels_2_NC_010463: integrase; D2W20_RS09270; phage(gi169936064)0.0Showinfo_outline
6complement(234646..235275)PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; D2W20_RS09275; phage(gi169936063)1.60e-95Showinfo_outline
7235398..235640PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein Ap1; D2W20_RS09280; phage(gi169936062)1.45e-52Showinfo_outline
8235673..236182PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein CII; D2W20_RS09285; phage(gi169936061)3.04e-106Showinfo_outline
9236190..236390PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS09290; phage(gi169936060)4.22e-13Showinfo_outline
10236354..236692PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS09295; phage(gi169936058)5.88e-35Showinfo_outline
11236760..236993PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS09300; phage(gi169936057)7.08e-36Showinfo_outline
12236993..237220PHAGE_Salmon_Fels_2_NC_010463: DksA-like zinc finger domain containing protein; D2W20_RS09305; phage(gi169936056)5.84e-49Showinfo_outline
13237217..238068PHAGE_Salmon_Fels_2_NC_010463: DNA adenine methylase-like protein; D2W20_RS09310; phage(gi169936055)9.80e-145Showinfo_outline
14238065..240449PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; D2W20_RS09315; phage(gi169936054)0.0Showinfo_outline
15240612..240800PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS09320; phage(gi169936053)3.87e-31Showinfo_outline
16240812..241045PHAGE_Salmon_Fels_2_NC_010463: TumB protein; D2W20_RS09325; phage(gi169936052)3.03e-42Showinfo_outline
17complement(241141..241824)hypothetical protein; D2W20_RS093300.0Showinfo_outline
18complement(241811..242890)hypothetical protein; D2W20_RS093350.0Showinfo_outline
19complement(242890..243891)hypothetical protein; D2W20_RS093400.0Showinfo_outline
20244413..244682PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; D2W20_RS09345; phage(gi281416328)1.11e-20Showinfo_outline
21complement(244739..245782)PHAGE_Salmon_Fels_2_NC_010463: portal vertex protein; D2W20_RS09350; phage(gi169936049)0.0Showinfo_outline
22complement(245782..247545)PHAGE_Salmon_Fels_2_NC_010463: terminase ATPase subunit; D2W20_RS09355; phage(gi169936048)0.0Showinfo_outline
23247686..248519PHAGE_Salmon_Fels_2_NC_010463: capsid-scaffolding protein; D2W20_RS09360; phage(gi169936047)4.04e-156Showinfo_outline
24248536..249588PHAGE_Salmon_Fels_2_NC_010463: capsid protein; D2W20_RS09365; phage(gi169936046)0.0Showinfo_outline
25249592..250245PHAGE_Salmon_Fels_2_NC_010463: terminase endonuclease subunit; D2W20_RS09370; phage(gi169936045)1.35e-106Showinfo_outline
26250341..250805PHAGE_Salmon_Fels_2_NC_010463: P2 gpL-like protein; D2W20_RS09375; phage(gi169936044)2.17e-97Showinfo_outline
27250805..251008PHAGE_Salmon_Fels_2_NC_010463: P2 gpX-like tail protein; D2W20_RS09380; phage(gi169936043)3.93e-38Showinfo_outline
28251012..251227PHAGE_Salmon_Fels_2_NC_010463: lysis protein; D2W20_RS09385; phage(gi169936042)7.80e-42Showinfo_outline
29251208..251717PHAGE_Salmon_Fels_2_NC_010463: endolysin; D2W20_RS09390; phage(gi169936041)2.94e-95Showinfo_outline
30251722..252105hypothetical protein; D2W20_RS093950.0Showinfo_outline
31252102..252530PHAGE_Salmon_Fels_2_NC_010463: P2 LysB-like protein; D2W20_RS09400; phage(gi169936038)7.14e-65Showinfo_outline
32252460..252663PHAGE_Salmon_Fels_2_NC_010463: P2 LysC-like protein; D2W20_RS09405; phage(gi169936037)2.75e-32Showinfo_outline
33252626..253048PHAGE_Salmon_Fels_2_NC_010463: P2 gpR-like tail completion protein; D2W20_RS09410; phage(gi169936036)1.54e-83Showinfo_outline
34253041..253487PHAGE_Salmon_Fels_2_NC_010463: P2 gpS-like tail completion protein; D2W20_RS09415; phage(gi169936035)3.48e-81Showinfo_outline
35complement(253510..254376)PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; D2W20_RS09420; phage(gi418489708)3.73e-46Showinfo_outline
36254471..255043PHAGE_Salmon_Fels_2_NC_010463: P2 gpV-like protein; D2W20_RS09425; phage(gi169936034)6.49e-97Showinfo_outline
37255040..255402PHAGE_Salmon_Fels_2_NC_010463: baseplate wedge subunit; D2W20_RS09430; phage(gi169936033)1.98e-62Showinfo_outline
38255389..256297PHAGE_Salmon_Fels_2_NC_010463: baseplate assembly protein; D2W20_RS09435; phage(gi169936032)1.45e-145Showinfo_outline
39256290..256961PHAGE_Salmon_Fels_2_NC_010463: P2 gpI-like baseplate assembly protein; D2W20_RS09440; phage(gi169936031)2.21e-76Showinfo_outline
40256963..258912PHAGE_Burkho_phiE255_NC_009237: gp26; D2W20_RS09445; phage(gi134288791)2.60e-08Showinfo_outline
41258922..260040PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; D2W20_RS09450; phage(gi472340194)6.93e-28Showinfo_outline
42260092..261165PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; D2W20_RS09455; phage(gi169936030)1.93e-44Showinfo_outline
43261314..262486PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; D2W20_RS09460; phage(gi169936025)0.0Showinfo_outline
44262496..263011PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; D2W20_RS09465; phage(gi169936024)6.43e-106Showinfo_outline
45263064..263363PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; D2W20_RS09470; phage(gi169936023)6.55e-46Showinfo_outline
46263378..263497PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; D2W20_RS09475; phage(gi169936022)1.52e-17Showinfo_outline
47263490..266120PHAGE_Shigel_SfII_NC_021857: tail protein; D2W20_RS09480; phage(gi526244650)7.57e-108Showinfo_outline
48266117..266602PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; D2W20_RS09485; phage(gi169936020)5.80e-96Showinfo_outline
49266599..267693PHAGE_Salmon_Fels_2_NC_010463: tail protein; D2W20_RS09490; phage(gi169936019)0.0Showinfo_outline
50267760..267978PHAGE_Salmon_Fels_2_NC_010463: P2 gpOgr-like protein (acttivation of late gene expression); D2W20_RS09495; phage(gi169936018)9.60e-34Showinfo_outline
51complement(268006..268383)hypothetical protein; D2W20_RS095000.0Showinfo_outline
52complement(268480..268842)tRNA0.0Showinfo_outline
53268480..268524attR0.0Showinfo_outline
54complement(268987..269469)PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; D2W20_RS09510; phage(gi588498309)6.82e-39Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 295663 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download