Submission Results

Sequence Name: Not Available

GenBank Accession Number: NZ_UKWY01000010.1

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|NZ_UKWY01000010.1| Klebsiella pneumoniae strain EuSCAPE_IT388, whole genome shotgun 212605, gc%: 56.71%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
133.3Kbintact150431090-34415 info_outlinePHAGE_Salmon_Fels_2_NC_010463(35)51.46%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_UKWY01000010.1| Klebsiella pneumoniae strain EuSCAPE_IT388, whole genome shotgun 212605, gc%: 56.71%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 43 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1090..1968)PHAGE_Salmon_Fels_2_NC_010463: P2 CI-like protein; D2W20_RS14240; phage(gi169936063)6.35e-40Showinfo_outline
22114..2335PHAGE_Haemop_HP2_NC_003315: orf2(S)cox; D2W20_RS14245; phage(gi17981819)1.65e-08Showinfo_outline
32368..2877PHAGE_Salmon_Fels_2_NC_010463: bacteriophage regulatory protein CII; D2W20_RS14250; phage(gi169936061)6.52e-112Showinfo_outline
42885..3085PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14255; phage(gi169936060)2.16e-17Showinfo_outline
53049..3390PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14260; phage(gi169936058)9.45e-68Showinfo_outline
63458..3691PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14265; phage(gi169936057)1.43e-34Showinfo_outline
73691..3918PHAGE_Salmon_Fels_2_NC_010463: DksA-like zinc finger domain containing protein; D2W20_RS14270; phage(gi169936056)8.98e-45Showinfo_outline
83915..4772PHAGE_Salmon_Fels_2_NC_010463: DNA adenine methylase-like protein; D2W20_RS14275; phage(gi169936055)1.44e-147Showinfo_outline
94769..7183PHAGE_Salmon_Fels_2_NC_010463: P2 gpA-like protein; D2W20_RS14280; phage(gi169936054)0.0Showinfo_outline
107337..7525PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14285; phage(gi169936053)1.61e-38Showinfo_outline
117464..7769PHAGE_Salmon_Fels_2_NC_010463: TumB protein; D2W20_RS14290; phage(gi169936052)6.23e-50Showinfo_outline
127884..8561PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14295; phage(gi169936051)1.52e-161Showinfo_outline
138837..10579PHAGE_Salmon_Fels_2_NC_010463: hypothetical protein; D2W20_RS14300; phage(gi169936050)2.52e-06Showinfo_outline
14complement(10641..11666)PHAGE_Salmon_Fels_2_NC_010463: portal vertex protein; D2W20_RS14305; phage(gi169936049)0.0Showinfo_outline
15complement(11666..13432)PHAGE_Salmon_Fels_2_NC_010463: terminase ATPase subunit; D2W20_RS14310; phage(gi169936048)0.0Showinfo_outline
1613575..14408PHAGE_Salmon_Fels_2_NC_010463: capsid-scaffolding protein; D2W20_RS14315; phage(gi169936047)1.25e-173Showinfo_outline
1714425..15483PHAGE_Salmon_Fels_2_NC_010463: capsid protein; D2W20_RS14320; phage(gi169936046)0.0Showinfo_outline
1815487..16137PHAGE_Salmon_Fels_2_NC_010463: terminase endonuclease subunit; D2W20_RS14325; phage(gi169936045)6.69e-127Showinfo_outline
1916233..16697PHAGE_Salmon_Fels_2_NC_010463: P2 gpL-like protein; D2W20_RS14330; phage(gi169936044)4.15e-102Showinfo_outline
2016697..16900PHAGE_Salmon_Fels_2_NC_010463: P2 gpX-like tail protein; D2W20_RS14335; phage(gi169936043)3.49e-37Showinfo_outline
2116904..17119PHAGE_Salmon_Fels_2_NC_010463: lysis protein; D2W20_RS14340; phage(gi169936042)2.60e-42Showinfo_outline
2217100..17609PHAGE_Salmon_Fels_2_NC_010463: endolysin; D2W20_RS14345; phage(gi169936041)1.03e-95Showinfo_outline
2317614..17997hypothetical protein; D2W20_RS143500.0Showinfo_outline
2417994..18422PHAGE_Salmon_Fels_2_NC_010463: P2 LysB-like protein; D2W20_RS14355; phage(gi169936038)3.58e-63Showinfo_outline
2518518..18949PHAGE_Salmon_Fels_2_NC_010463: P2 gpR-like tail completion protein; D2W20_RS14360; phage(gi169936036)1.49e-84Showinfo_outline
2618942..19388PHAGE_Salmon_Fels_2_NC_010463: P2 gpS-like tail completion protein; D2W20_RS14365; phage(gi169936035)1.90e-73Showinfo_outline
27complement(19385..20077)hypothetical protein; D2W20_RS143700.0Showinfo_outline
2820172..20744PHAGE_Salmon_Fels_2_NC_010463: P2 gpV-like protein; D2W20_RS14375; phage(gi169936034)3.98e-98Showinfo_outline
2920741..21103PHAGE_Salmon_Fels_2_NC_010463: baseplate wedge subunit; D2W20_RS14380; phage(gi169936033)1.24e-63Showinfo_outline
3021090..21998PHAGE_Salmon_Fels_2_NC_010463: baseplate assembly protein; D2W20_RS14385; phage(gi169936032)4.25e-149Showinfo_outline
3121991..22590PHAGE_Salmon_Fels_2_NC_010463: P2 gpI-like baseplate assembly protein; D2W20_RS14390; phage(gi169936031)1.07e-74Showinfo_outline
3222592..25543PHAGE_Burkho_BcepMu_NC_005882: gp52; D2W20_RS14395; phage(gi48696962)7.88e-08Showinfo_outline
3325547..26278hypothetical protein; D2W20_RS144000.0Showinfo_outline
3426275..26478hypothetical protein; D2W20_RS144050.0Showinfo_outline
3526508..27584PHAGE_Erwini_phiEt88_NC_015295: putative tail fiber protein; D2W20_RS14410; phage(gi327198586)4.79e-33Showinfo_outline
3627723..28895PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; D2W20_RS14415; phage(gi169936025)0.0Showinfo_outline
3728905..29420PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; D2W20_RS14420; phage(gi169936024)7.73e-107Showinfo_outline
3829473..29772PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; D2W20_RS14425; phage(gi169936023)9.57e-48Showinfo_outline
3929787..29906PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; D2W20_RS14430; phage(gi169936022)1.52e-17Showinfo_outline
4029899..32526PHAGE_Shigel_SfII_NC_021857: tail protein; D2W20_RS14435; phage(gi526244650)8.40e-108Showinfo_outline
4132523..33008PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; D2W20_RS14440; phage(gi169936020)1.39e-91Showinfo_outline
4233005..34105PHAGE_Salmon_Fels_2_NC_010463: tail protein; D2W20_RS14445; phage(gi169936019)0.0Showinfo_outline
4334197..34415PHAGE_Salmon_Fels_2_NC_010463: P2 gpOgr-like protein (acttivation of late gene expression); D2W20_RS14450; phage(gi169936018)1.22e-27Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 212605 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download