Submission Results

Sequence Name: Not Available

GenBank Accession Number: PRDC01000004.1

GenInfo (GI) Number: 0000000000

Download Results: PRDC01000004.1.PHASTER.zip

gi|00000000|ref|PRDC01000004.1| Bacillus subtilis strain HU Biol-II HUBIOL_contig_4, whole genome 531205, gc%: 43.42%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
147.9Kbquestionable8047306108-354106 info_outlinePHAGE_Bacill_phi105_NC_004167(27)40.78%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PRDC01000004.1| Bacillus subtilis strain HU Biol-II HUBIOL_contig_4, whole genome 531205, gc%: 43.42%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 49 CDS

#CDS PositionBLAST HitE-ValueSequence
1306108..306119attL0.0Showinfo_outline
2complement(306136..307563)PHAGE_Bacill_phi105_NC_004167: site-specific recombinase for integration and excision; C4E21_05755; phage(gi22855025)0.0Showinfo_outline
3complement(307603..308049)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05760; phage(gi22855026)4.76e-96Showinfo_outline
4complement(308063..308497)PHAGE_Bacill_phi105_NC_004167: immunity repressor; C4E21_05765; phage(gi22855027)4.20e-91Showinfo_outline
5308777..309049PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05770; phage(gi22855028)2.06e-54Showinfo_outline
6309270..309545PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05775; phage(gi22855030)6.75e-30Showinfo_outline
7309739..310293PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05780; phage(gi22855031)4.39e-127Showinfo_outline
8310297..311235PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05785; phage(gi22855032)0.0Showinfo_outline
9311225..311422PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05790; phage(gi22855033)3.04e-24Showinfo_outline
10311451..311891PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05795; phage(gi22855034)7.27e-100Showinfo_outline
11311952..314369PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05800; phage(gi22855035)0.0Showinfo_outline
12314570..315007PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05805; phage(gi22855036)2.66e-97Showinfo_outline
13315004..315543PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05810; phage(gi22855037)4.70e-126Showinfo_outline
14315577..316092PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05815; phage(gi22855038)1.82e-118Showinfo_outline
15316264..317019PHAGE_Paenib_Harrison_NC_028746: DNA-cytosine methyltransferase; C4E21_05820; phage(gi971482382)1.71e-85Showinfo_outline
16317105..317518PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05825; phage(gi22855040)2.43e-84Showinfo_outline
17317955..318428hypothetical protein; C4E21_058300.0Showinfo_outline
18318510..319112hypothetical protein; C4E21_058350.0Showinfo_outline
19319255..319569hypothetical protein; C4E21_058400.0Showinfo_outline
20319623..319967hypothetical protein; C4E21_058450.0Showinfo_outline
21319957..320322PHAGE_Geobac_E2_NC_009552: Putative HNH endonuclease; C4E21_05850; phage(gi158380388)2.02e-38Showinfo_outline
22320359..320540hypothetical protein; C4E21_058550.0Showinfo_outline
23320550..321065PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05860; phage(gi22854994)2.65e-20Showinfo_outline
24321062..322771PHAGE_Bacill_BtCS33_NC_018085: phage terminase large subunit; C4E21_05865; phage(gi392972712)0.0Showinfo_outline
25322960..324240PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05870; phage(gi22854998)0.0Showinfo_outline
26324203..324829PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05875; phage(gi22854999)1.86e-108Showinfo_outline
27324868..326163PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05880; phage(gi22855000)2.02e-55Showinfo_outline
28326187..326639PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05885; phage(gi22855002)7.31e-47Showinfo_outline
29326657..326959PHAGE_Bacill_phIS3501_NC_019502: phage DNA packaging protein; C4E21_05890; phage(gi422934332)1.89e-17Showinfo_outline
30326949..327263PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; C4E21_05895; phage(gi148747735)4.28e-13Showinfo_outline
31327263..327661PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05900; phage(gi22855005)1.04e-11Showinfo_outline
32327658..328050hypothetical protein; C4E21_059050.0Showinfo_outline
33328065..328679PHAGE_Bacill_WBeta_NC_007734: putative major tail protein; C4E21_05910; phage(gi85701389)8.47e-22Showinfo_outline
34328744..329121hypothetical protein; C4E21_059150.0Showinfo_outline
35329321..333808PHAGE_Lister_LP_101_NC_024387: tail tape measure protein; C4E21_05920; phage(gi658607824)1.68e-91Showinfo_outline
36333802..334641PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05925; phage(gi22855011)6.69e-93Showinfo_outline
37334656..336359PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05930; phage(gi22855013)2.77e-110Showinfo_outline
38336411..338309PHAGE_Staphy_SA13_NC_021863: hypothetical protein; C4E21_05935; phage(gi526244924)1.02e-57Showinfo_outline
39338325..338633PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05940; phage(gi22855016)1.36e-05Showinfo_outline
40338816..340405PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05945; phage(gi22855015)4.53e-65Showinfo_outline
41340418..340789PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05950; phage(gi22855016)5.37e-32Showinfo_outline
42340789..340962PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05955; phage(gi22855017)1.19e-24Showinfo_outline
43341014..341226PHAGE_Bacill_SPbeta_NC_001884: possibly involved in bacteriocin production or immunity; C4E21_05960; phage(gi9630150)5.22e-41Showinfo_outline
44341241..341504PHAGE_Bacill_Staley_NC_022767: holin; C4E21_05965; phage(gi568191187)1.53e-24Showinfo_outline
45341563..342540PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; C4E21_05970; phage(gi564292586)8.29e-83Showinfo_outline
46complement(342590..343048)SMI1/KNR4 family protein; C4E21_059750.0Showinfo_outline
47complement(343063..344832)PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; C4E21_05980; phage(gi9630134)7.25e-172Showinfo_outline
48345180..346292PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4E21_05985; phage(gi22855023)2.38e-148Showinfo_outline
49354106..354117attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 531205 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download