Submission Results

Sequence Name: Not Available

GenBank Accession Number: PRDS01000003.1

GenInfo (GI) Number: 0000000000

Download Results: PRDS01000003.1.PHASTER.zip

gi|00000000|ref|PRDS01000003.1| Albidovulum inexpectatum strain DSM 12048 318456, gc%: 64.93%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.5Kbincomplete5019239341-254883 info_outlinePHAGE_Paraco_vB_PmaS_IMEP1_NC_026608(5)66.20%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PRDS01000003.1| Albidovulum inexpectatum strain DSM 12048 318456, gc%: 64.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 19 CDS

#CDS PositionBLAST HitE-ValueSequence
1239341..240684PHAGE_Dinoro_vB_DshS_R5C_NC_041921: hypothetical protein; LV82_01340; phage(gi100023)3.34e-85Showinfo_outline
2240742..241914PHAGE_Geobac_GBK2_NC_023612: portal protein; LV82_01341; phage(gi589893765)3.02e-63Showinfo_outline
3241916..242152hypothetical protein; LV82_013420.0Showinfo_outline
4242163..242723PHAGE_Paraco_Shpa_NC_041868: DNA topoisomerase II large subunit; LV82_01343; phage(gi100005)8.73e-41Showinfo_outline
5242762..243958PHAGE_Azospi_Cd_NC_010355: Phage major capsid protein; LV82_01344; phage(gi168495136)2.13e-79Showinfo_outline
6244119..244715PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; LV82_01345; phage(gi100008)1.09e-06Showinfo_outline
7244712..245050PHAGE_Paenib_Willow_NC_041867: hypothetical protein; LV82_01346; phage(gi100008)2.37e-07Showinfo_outline
8245047..245454uncharacterized protein DUF3168; LV82_013470.0Showinfo_outline
9245512..245925PHAGE_Rhodob_RcapNL_NC_020489: gene transfer aget (GTA) orfg9-like phage major tail protein; LV82_01348; phage(gi461474972)9.48e-21Showinfo_outline
10245925..246245tail tube GTA-gp10-like protein; LV82_013490.0Showinfo_outline
11246242..246445putative phage protein (TIGR02216 family); LV82_013500.0Showinfo_outline
12246448..247122PHAGE_Vibrio_SSP002_NC_041910: sliding clamp DNA polymerase; LV82_01351; phage(gi100042)1.13e-16Showinfo_outline
13247133..247765PHAGE_Rhodob_RcCronus_NC_042049: hypothetical protein; LV82_01352; phage(gi100015)1.24e-62Showinfo_outline
14247762..248649PHAGE_Rhodob_RcCronus_NC_042049: hypothetical protein; LV82_01353; phage(gi100017)8.27e-36Showinfo_outline
15248646..249086PHAGE_Rhodob_RcCronus_NC_042049: exonuclease A; LV82_01354; phage(gi100018)1.89e-14Showinfo_outline
16249099..253001PHAGE_Rhodob_RcCronus_NC_042049: hypothetical protein; LV82_01355; phage(gi100019)0.0Showinfo_outline
17252994..253704PHAGE_Rhodob_RcCronus_NC_042049: hypothetical protein; LV82_01356; phage(gi100020)1.59e-22Showinfo_outline
18253708..253992hypothetical protein; LV82_013570.0Showinfo_outline
19254080..254883PHAGE_Strept_9871_NC_031069: hypothetical protein; LV82_01358; phage(gi100019)1.80e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 318456 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download