Submission Results

Sequence Name: Not Available

GenBank Accession Number: PREZ01000001.1

GenInfo (GI) Number: 0000000000

Download Results: PREZ01000001.1.PHASTER.zip

gi|00000000|ref|PREZ01000001.1| Jeotgalibacillus proteolyticus strain 22-7 22-7_scaffold1, whole 694756, gc%: 40.97%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
14.3Kbincomplete207133-4444 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(2)39.56%Show info_outline
253Kbintact1204983292-136292 info_outlinePHAGE_Geobac_GBSV1_NC_008376(11)38.70%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PREZ01000001.1| Jeotgalibacillus proteolyticus strain 22-7 22-7_scaffold1, whole 694756, gc%: 40.97%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1133..1677PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; C4B60_00005; phage(gi557307612)1.05e-16Showinfo_outline
21677..2441PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; C4B60_00010; phage(gi557307613)1.63e-51Showinfo_outline
32474..2764hypothetical protein; C4B60_000150.0Showinfo_outline
42856..3170PHAGE_Strept_K13_NC_024357: phage protein; C4B60_00020; phage(gi658307235)2.76e-07Showinfo_outline
53176..3442PHAGE_Staphy_IME_SA4_NC_029025: holin; C4B60_00025; phage(gi971766707)6.78e-09Showinfo_outline
63444..3878PHAGE_Bacill_Mgbh1_NC_041879: RecA-like recombination protein; C4B60_00030; phage(gi100035)2.15e-49Showinfo_outline
74136..4444PHAGE_Bacill_Bp8p_C_NC_029121: putative N-acetylmuramoyl-L-alanine amidase; C4B60_00035; phage(gi985761478)7.80e-14Showinfo_outline

Region 2, total 53 CDS

#CDS PositionBLAST HitE-ValueSequence
183292..83303attL0.0Showinfo_outline
2complement(93926..94147)PHAGE_Paenib_Willow_NC_041867: hypothetical protein; C4B60_00510; phage(gi100029)5.70e-08Showinfo_outline
394189..94200attL0.0Showinfo_outline
494287..94628hypothetical protein; C4B60_005150.0Showinfo_outline
594655..95725hypothetical protein; C4B60_005200.0Showinfo_outline
6complement(95765..96949)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; C4B60_00525; phage(gi22855019)7.16e-23Showinfo_outline
7complement(96952..97218)PHAGE_Staphy_IME_SA4_NC_029025: holin; C4B60_00530; phage(gi971766707)2.59e-08Showinfo_outline
8complement(97224..97538)PHAGE_Strept_K13_NC_024357: phage protein; C4B60_00535; phage(gi658307235)7.61e-08Showinfo_outline
9complement(97593..97847)PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; C4B60_00540; phage(gi56694923)3.65e-15Showinfo_outline
10complement(97959..98258)PHAGE_Brevib_Sundance_NC_028749: hypothetical protein; C4B60_00545; phage(gi971482584)2.45e-07Showinfo_outline
11complement(98369..104131)PHAGE_Bacill_BCJA1c_NC_006557: host specificity protein; C4B60_00550; phage(gi56694921)0.0Showinfo_outline
12104190..104816hypothetical protein; C4B60_005550.0Showinfo_outline
13complement(104985..105707)PHAGE_Bacill_250_NC_029024: phage putative tail component; C4B60_00560; phage(gi971766621)1.41e-12Showinfo_outline
14complement(105670..107844)PHAGE_Strept_SpSL1_NC_027396: tail length tape-measure protein; C4B60_00565; phage(gi849256054)4.35e-29Showinfo_outline
15complement(107849..108121)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; C4B60_00570; phage(gi100017)1.82e-07Showinfo_outline
16complement(108142..108477)PHAGE_Clostr_phiCP26F_NC_019496: hypothetical protein; C4B60_00575; phage(gi422933963)1.97e-06Showinfo_outline
17complement(108530..109132)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; C4B60_00580; phage(gi100015)6.69e-86Showinfo_outline
18complement(109150..109518)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; C4B60_00585; phage(gi100014)1.42e-38Showinfo_outline
19complement(109515..109970)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; C4B60_00590; phage(gi100013)2.14e-55Showinfo_outline
20complement(109987..110307)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; C4B60_00595; phage(gi115334633)7.46e-24Showinfo_outline
21complement(110294..110587)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; C4B60_00600; phage(gi115334632)5.52e-26Showinfo_outline
22complement(110587..110787)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; C4B60_00605; phage(gi115334631)3.77e-15Showinfo_outline
23complement(110809..112263)PHAGE_Geobac_GBSV1_NC_008376: phage major capsid protein; C4B60_00610; phage(gi115334630)1.05e-50Showinfo_outline
24complement(112235..112828)PHAGE_Geobac_GBSV1_NC_008376: phage prohead; C4B60_00615; phage(gi115334629)6.54e-82Showinfo_outline
25complement(112821..114032)PHAGE_Geobac_GBSV1_NC_008376: phage portal protein; C4B60_00620; phage(gi115334628)0.0Showinfo_outline
26complement(114040..115734)PHAGE_Geobac_GBSV1_NC_008376: phage terminase; C4B60_00625; phage(gi115334627)0.0Showinfo_outline
27complement(115757..116110)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; C4B60_00630; phage(gi115334626)3.28e-22Showinfo_outline
28complement(116188..116484)PHAGE_Geobac_GBSV1_NC_008376: HNH endonuclease; C4B60_00635; phage(gi115334625)5.27e-31Showinfo_outline
29complement(116563..116781)hypothetical protein; C4B60_006400.0Showinfo_outline
30complement(116951..117613)hypothetical protein; C4B60_006450.0Showinfo_outline
31complement(117885..118427)PHAGE_Bacill_BtCS33_NC_018085: integrase; C4B60_00650; phage(gi392972759)6.65e-81Showinfo_outline
32complement(118424..118891)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; C4B60_00655; phage(gi115334621)5.16e-43Showinfo_outline
33complement(118976..119176)hypothetical protein; C4B60_006600.0Showinfo_outline
34complement(119205..119975)PHAGE_Agroba_Atu_ph07_NC_042013: capsid vertex protein; C4B60_00665; phage(gi100220)3.26e-85Showinfo_outline
35complement(120369..120584)hypothetical protein; C4B60_006700.0Showinfo_outline
36complement(120861..121568)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; C4B60_00675; phage(gi712912384)5.18e-89Showinfo_outline
37complement(121592..121966)PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; C4B60_00680; phage(gi971821626)1.03e-33Showinfo_outline
38complement(121991..122455)hypothetical protein; C4B60_006850.0Showinfo_outline
39complement(122427..123683)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; C4B60_00690; phage(gi100053)2.19e-76Showinfo_outline
40complement(123686..124537)PHAGE_Geobac_E2_NC_009552: putative replication protein; C4B60_00695; phage(gi148747766)4.49e-51Showinfo_outline
41complement(124733..124951)hypothetical protein; C4B60_007000.0Showinfo_outline
42124971..124982attR0.0Showinfo_outline
43complement(125129..125341)hypothetical protein; C4B60_007050.0Showinfo_outline
44complement(125565..126077)PHAGE_Lister_B054_NC_009813: gp43; C4B60_00710; phage(gi157325327)3.25e-10Showinfo_outline
45complement(126311..126556)PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; C4B60_00715; phage(gi100027)1.79e-11Showinfo_outline
46126683..127033PHAGE_Geobac_GBSV1_NC_008376: immunity repressor protein; C4B60_00720; phage(gi115334658)1.76e-14Showinfo_outline
47127162..127746hypothetical protein; C4B60_007250.0Showinfo_outline
48127670..129184PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; C4B60_00730; phage(gi725950572)2.69e-25Showinfo_outline
49complement(129181..129594)CoA-binding protein; C4B60_007350.0Showinfo_outline
50complement(129621..130535)glycine/betaine ABC transporter substrate-binding protein; C4B60_007400.0Showinfo_outline
51complement(130655..131302)PHAGE_Bacill_G_NC_023719: gp243; C4B60_00745; phage(gi593777699)7.70e-06Showinfo_outline
52complement(131307..132278)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; C4B60_00750; phage(gi371496158)3.22e-34Showinfo_outline
53136292..136303attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 694756 bps
Phages: 2
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download