Submission Results

Sequence Name: Not Available

GenBank Accession Number: PRKR01000022.1

GenInfo (GI) Number: 0000000000

Download Results: PRKR01000022.1.PHASTER.zip

gi|00000000|ref|PRKR01000022.1| Brevibacillus laterosporus strain BGSP9 scf_20796_22, whole genome 105959, gc%: 39.34%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
154.3Kbintact1508559-54431 info_outlinePHAGE_Brevib_Jimmer1_NC_029104(48)37.83%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PRKR01000022.1| Brevibacillus laterosporus strain BGSP9 scf_20796_22, whole genome 105959, gc%: 39.34%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 87 CDS

#CDS PositionBLAST HitE-ValueSequence
159..127attL0.0Showinfo_outline
2complement(190..1665)PHAGE_Bacill_phi105_NC_004167: site-specific recombinase for integration and excision; C4A76_14765; phage(gi22855025)2.63e-76Showinfo_outline
3complement(1676..2299)terminase; C4A76_147700.0Showinfo_outline
4complement(2375..2731)PHAGE_Brevib_Abouo_NC_029029: transcriptional regulator; C4A76_14775; phage(gi971767216)2.18e-15Showinfo_outline
52884..3123PHAGE_Brevib_Jimmer1_NC_029104: XRE family transcriptional regulator; C4A76_14780; phage(gi985760854)1.62e-08Showinfo_outline
63244..3954PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14785; phage(gi985760862)3.64e-05Showinfo_outline
73978..4184PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14790; phage(gi985760864)6.62e-34Showinfo_outline
84396..4644PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14795; phage(gi985760866)4.32e-41Showinfo_outline
94628..4885PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14800; phage(gi985760867)5.20e-50Showinfo_outline
104882..5367PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14805; phage(gi985760868)8.39e-85Showinfo_outline
115378..5974PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14810; phage(gi985760869)5.44e-116Showinfo_outline
125967..6386PHAGE_Brevib_Jimmer1_NC_029104: single-stranded DNA binding protein; C4A76_14815; phage(gi985760870)1.29e-65Showinfo_outline
136421..6840hypothetical protein; C4A76_148200.0Showinfo_outline
146830..7246hypothetical protein; C4A76_148250.0Showinfo_outline
157303..7653PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14830; phage(gi985760871)1.68e-73Showinfo_outline
167672..8649PHAGE_Lactob_PLE3_NC_031125: dsDNA binding protein; C4A76_14835; phage(gi100047)1.32e-11Showinfo_outline
178646..8972PHAGE_Brevib_Jimmer1_NC_029104: anti-repressor; C4A76_14840; phage(gi985760875)1.78e-73Showinfo_outline
189383..9592PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14845; phage(gi985760876)1.05e-38Showinfo_outline
199684..10040PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14850; phage(gi985760878)5.59e-61Showinfo_outline
2010334..10978PHAGE_Brevib_Jimmer1_NC_029104: dUTPase; C4A76_14855; phage(gi985760882)3.77e-90Showinfo_outline
2111111..11833PHAGE_Burkho_phi1026b_NC_005284: gp47; C4A76_14860; phage(gi38707937)2.16e-26Showinfo_outline
22complement(11854..12054)PHAGE_Brevib_Davies_NC_022980: hypothetical protein; C4A76_14865; phage(gi609217278)9.95e-37Showinfo_outline
2312116..12637PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; C4A76_14870; phage(gi100051)2.28e-13Showinfo_outline
2412661..12921PHAGE_Brevib_Jenst_NC_028805: hypothetical protein; C4A76_14875; phage(gi971744974)2.57e-20Showinfo_outline
2513198..13620PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14880; phage(gi985760891)7.84e-85Showinfo_outline
2614058..14327PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14885; phage(gi985760894)2.80e-56Showinfo_outline
2714420..14926PHAGE_Brevib_Jimmer1_NC_029104: RNA polymerase sigma 24; C4A76_14890; phage(gi985760895)1.76e-113Showinfo_outline
2815263..15832hypothetical protein; C4A76_148950.0Showinfo_outline
29complement(15864..16460)hypothetical protein; C4A76_149000.0Showinfo_outline
3016617..16937PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14905; phage(gi985760897)1.22e-64Showinfo_outline
3116969..17169PHAGE_Paenib_Vegas_NC_028767: phosphomannomutase; C4A76_14910; phage(gi971741658)1.62e-31Showinfo_outline
3217394..18161PHAGE_Clostr_phiMMP01_NC_028883: putative phage-related terminase small subunit; skin element; C4A76_14915; phage(gi971819963)8.10e-53Showinfo_outline
3318154..19410PHAGE_Brevib_Jimmer1_NC_029104: terminase large subunit; C4A76_14920; phage(gi985760798)0.0Showinfo_outline
34complement(19489..20244)PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14925; phage(gi985760799)1.38e-124Showinfo_outline
3520332..21780PHAGE_Brevib_Jimmer1_NC_029104: portal protein, SPP1 family; C4A76_14930; phage(gi985760800)0.0Showinfo_outline
3621777..22814PHAGE_Brevib_Jimmer1_NC_029104: head morphogenesis protein; C4A76_14935; phage(gi985760801)0.0Showinfo_outline
3722903..23529PHAGE_Brevib_Jimmer1_NC_029104: minor structural protein; C4A76_14940; phage(gi985760802)6.25e-132Showinfo_outline
3823548..23919PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14945; phage(gi985760803)9.46e-77Showinfo_outline
3923937..24977PHAGE_Brevib_Jimmer1_NC_029104: major capsid protein; C4A76_14950; phage(gi985760804)0.0Showinfo_outline
4025192..25551PHAGE_Brevib_Jimmer1_NC_029104: putative DNA packaging protein; C4A76_14955; phage(gi985760806)6.57e-77Showinfo_outline
4125551..25907PHAGE_Brevib_Jimmer1_NC_029104: head joining protein; C4A76_14960; phage(gi985760807)1.50e-73Showinfo_outline
4225907..26413PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14965; phage(gi985760808)2.88e-112Showinfo_outline
4326400..26843PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_14970; phage(gi985760809)1.93e-95Showinfo_outline
4427005..28318PHAGE_Brevib_Jimmer1_NC_029104: tail sheath protein; C4A76_14975; phage(gi985760811)0.0Showinfo_outline
4528319..28783PHAGE_Brevib_Jimmer1_NC_029104: core tail protein; C4A76_14980; phage(gi985760812)1.36e-107Showinfo_outline
4629454..29876PHAGE_Clostr_CDMH1_NC_024144: conserved hypothetical protein (XkdN-like); C4A76_14985; phage(gi640884874)1.51e-30Showinfo_outline
4730094..30579hypothetical protein; C4A76_149900.0Showinfo_outline
4830632..32554PHAGE_Brevib_Jimmer1_NC_029104: tail length tape measure protein; C4A76_14995; phage(gi985760820)1.17e-155Showinfo_outline
4932547..33224PHAGE_Brevib_Jimmer1_NC_029104: LysM domain-containing protein; C4A76_15000; phage(gi985760821)6.25e-161Showinfo_outline
5033239..34207PHAGE_Brevib_Jimmer1_NC_029104: late control D protein; C4A76_15005; phage(gi985760822)0.0Showinfo_outline
5134212..34571PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15010; phage(gi985760823)1.10e-74Showinfo_outline
5234571..34966PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15015; phage(gi985760824)5.97e-90Showinfo_outline
5334966..36036PHAGE_Brevib_Jimmer1_NC_029104: baseplate J family protein; C4A76_15020; phage(gi985760825)0.0Showinfo_outline
5436044..36703PHAGE_Brevib_Jimmer1_NC_029104: phage-like element PBSX protein; C4A76_15025; phage(gi985760826)1.98e-157Showinfo_outline
5536690..36968PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15030; phage(gi985760827)3.79e-45Showinfo_outline
5636972..37262PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15035; phage(gi985760828)7.51e-58Showinfo_outline
5737272..38378PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15040; phage(gi985760829)0.0Showinfo_outline
5838393..38740PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15045; phage(gi985760830)2.28e-71Showinfo_outline
5938946..39212PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15050; phage(gi985760832)1.14e-36Showinfo_outline
6039215..39469PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15055; phage(gi985760833)7.03e-49Showinfo_outline
6139466..40650PHAGE_Brevib_Jimmer1_NC_029104: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; C4A76_15060; phage(gi985760834)1.34e-44Showinfo_outline
6240677..41015RNA polymerase subunit sigma-24; C4A76_150650.0Showinfo_outline
6340961..41197hypothetical protein; C4A76_150700.0Showinfo_outline
6441350..41904PHAGE_Geobac_GBSV1_NC_008376: N-acetylmuramoyl-L-alanine amidase; C4A76_15075; phage(gi115334645)3.66e-08Showinfo_outline
65complement(42073..42603)hypothetical protein; C4A76_150800.0Showinfo_outline
66complement(42818..42910)transposase; C4A76_150850.0Showinfo_outline
6742923..43042PHAGE_Brevib_Jimmer1_NC_029104: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; C4A76_15090; phage(gi985760834)1.95e-18Showinfo_outline
6843148..43699hypothetical protein; C4A76_150950.0Showinfo_outline
6943696..44376hypothetical protein; C4A76_151000.0Showinfo_outline
7044391..45386hypothetical protein; C4A76_151050.0Showinfo_outline
71complement(45564..46811)PHAGE_Brevib_Jimmer1_NC_029104: kelch repeat protein; C4A76_15110; phage(gi985760841)0.0Showinfo_outline
72complement(47149..47352)PHAGE_Paenib_Shelly_NC_041909: hypothetical protein; C4A76_15115; phage(gi100030)9.93e-28Showinfo_outline
7347605..48036hypothetical protein; C4A76_151200.0Showinfo_outline
7448184..48522PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15125; phage(gi985760844)2.50e-72Showinfo_outline
7548663..49010hypothetical protein; C4A76_151300.0Showinfo_outline
76complement(49620..50285)PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15135; phage(gi985760842)1.62e-150Showinfo_outline
7750396..50578PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15140; phage(gi985760843)1.83e-33Showinfo_outline
7850707..51045PHAGE_Brevib_Jimmer1_NC_029104: hypothetical protein; C4A76_15145; phage(gi985760844)2.51e-68Showinfo_outline
79complement(51136..51359)PHAGE_Staphy_SpaA1_NC_018277: XRE family transcriptional regulator; C4A76_15150; phage(gi399498887)1.67e-10Showinfo_outline
8051790..51969hypothetical protein; C4A76_151550.0Showinfo_outline
8152002..52217hypothetical protein; C4A76_151600.0Showinfo_outline
82complement(52214..52519)hypothetical protein; C4A76_151650.0Showinfo_outline
83complement(52647..52792)transcriptional regulator; C4A76_151700.0Showinfo_outline
8452961..53410LytTR family transcriptional regulator; C4A76_151750.0Showinfo_outline
8553410..53829DUF3021 domain-containing protein; C4A76_151800.0Showinfo_outline
8653846..53914attR0.0Showinfo_outline
8754024..54431PHAGE_Sinorh_phiM7_NC_041929: prohead core protein; C4A76_15185; phage(gi100218)6.61e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 105959 bps
Phages: 1
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download