Submission Results

Sequence Name: Not Available

GenBank Accession Number: PRKS01000021.1

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|PRKS01000021.1| Brevibacillus laterosporus strain BGSP7 scf_19168_21, whole genome 117123, gc%: 38.18%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
145.7Kbintact120393310-49080 info_outlinePHAGE_Brevib_Davies_NC_022980(8)39.29%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PRKS01000021.1| Brevibacillus laterosporus strain BGSP7 scf_19168_21, whole genome 117123, gc%: 38.18%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 41 CDS

#CDS PositionBLAST HitE-ValueSequence
29390..9818PHAGE_Thermu_phiYS40_NC_008584: serine kinase; C4A75_18390; phage(gi118197679)1.32e-20Showinfo_outline
3complement(9851..11293)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; C4A75_18395; phage(gi985757806)3.63e-131Showinfo_outline
411817..12464PHAGE_Brevib_Davies_NC_022980: hypothetical protein; C4A75_18400; phage(gi609217240)6.32e-06Showinfo_outline
512473..12994PHAGE_Brevib_Davies_NC_022980: accessory gene regulator B family protein; C4A75_18405; phage(gi609217242)4.36e-24Showinfo_outline
612994..13119cyclic lactone autoinducer peptide; C4A75_184100.0Showinfo_outline
713175..13918hypothetical protein; C4A75_184150.0Showinfo_outline
8complement(14258..14638)PHAGE_Brevib_Davies_NC_022980: transcriptional regulator; C4A75_18420; phage(gi609217248)9.82e-18Showinfo_outline
9complement(14859..15215)PHAGE_Brevib_Davies_NC_022980: transcriptional regulator; C4A75_18425; phage(gi609217247)2.14e-15Showinfo_outline
1015367..15594PHAGE_Lister_B054_NC_009813: gp42; C4A75_18430; phage(gi157325326)1.24e-12Showinfo_outline
1116095..16640hypothetical protein; C4A75_184350.0Showinfo_outline
1217375..17602PHAGE_Bacill_Bastille_NC_018856: hypothetical protein; C4A75_18440; phage(gi410492253)6.73e-11Showinfo_outline
1318331..18663PHAGE_Lactob_phiAT3_NC_005893: putative DNA replication protein; C4A75_18445; phage(gi48697290)1.33e-17Showinfo_outline
1418735..19082PHAGE_Lactob_phiAT3_NC_005893: putative DNA replication protein; C4A75_18450; phage(gi48697290)1.19e-15Showinfo_outline
1519153..20442PHAGE_Geobac_GBK2_NC_023612: helicase; C4A75_18455; phage(gi589893809)2.87e-105Showinfo_outline
16complement(20709..21017)hypothetical protein; C4A75_184600.0Showinfo_outline
17complement(21164..21376)PHAGE_Brevib_Davies_NC_022980: hypothetical protein; C4A75_18465; phage(gi609217278)1.74e-33Showinfo_outline
1821438..21848PHAGE_Brevib_Davies_NC_022980: hypothetical protein; C4A75_18470; phage(gi609217280)4.21e-77Showinfo_outline
1921845..22120hypothetical protein; C4A75_184750.0Showinfo_outline
2022321..22569PHAGE_Bacill_BCP78_NC_018860: hypothetical protein; C4A75_18480; phage(gi410492797)7.78e-16Showinfo_outline
2122608..22976hypothetical protein; C4A75_184850.0Showinfo_outline
2223024..23230PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; C4A75_18490; phage(gi971482531)7.19e-24Showinfo_outline
2323227..23550PHAGE_Burkho_KS5_NC_015265: gp45; C4A75_18495; phage(gi327198043)5.29e-10Showinfo_outline
2424322..24816PHAGE_Brevib_Davies_NC_022980: RNA polymerase subunit sigma 24; C4A75_18500; phage(gi609217287)6.65e-47Showinfo_outline
2524938..25600PHAGE_Strept_315.1_NC_004584: site-specific recombinase; C4A75_18505; phage(gi28876169)3.98e-39Showinfo_outline
2625628..26293hypothetical protein; C4A75_185100.0Showinfo_outline
2726433..27836hypothetical protein; C4A75_185150.0Showinfo_outline
2827937..28284PHAGE_Paenib_Harrison_NC_028746: HNH endonuclease; C4A75_18520; phage(gi971482394)1.06e-32Showinfo_outline
2928386..28700PHAGE_Paenib_Xenia_NC_028837: terminase small subunit; C4A75_18525; phage(gi971748147)1.91e-53Showinfo_outline
3028678..30414PHAGE_Paenib_Harrison_NC_028746: terminase large subunit; C4A75_18530; phage(gi971482312)0.0Showinfo_outline
3130463..31641PHAGE_Paenib_Harrison_NC_028746: portal protein; C4A75_18535; phage(gi971482313)0.0Showinfo_outline
3231625..32392PHAGE_Paenib_phiIBB_Pl23_NC_021865: Clp protease-like protein; C4A75_18540; phage(gi526245014)3.86e-57Showinfo_outline
3332389..33522PHAGE_Paenib_HB10c2_NC_028758: major capsid protein; C4A75_18545; phage(gi971740653)0.0Showinfo_outline
3433538..33807PHAGE_Paenib_Xenia_NC_028837: head-tail connector protein; C4A75_18550; phage(gi971748153)1.37e-16Showinfo_outline
3533820..34116hypothetical protein; C4A75_185550.0Showinfo_outline
3634088..34708PHAGE_Geobac_GBK2_NC_023612: head-tail adaptor; C4A75_18560; phage(gi589893770)5.95e-09Showinfo_outline
3734813..35190terminase; C4A75_185650.0Showinfo_outline
3835190..35639hypothetical protein; C4A75_185700.0Showinfo_outline
3935632..35823hypothetical protein; C4A75_185750.0Showinfo_outline
4035824..37161PHAGE_Strept_EJ_1_NC_005294: sheath tail protein; C4A75_18580; phage(gi39653727)9.26e-21Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 117123 bps
Phages: 1
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download