Submission Results

Sequence Name: Not Available

GenBank Accession Number: PRLF01000028.1

GenInfo (GI) Number: 0000000000

Download Results: PRLF01000028.1.PHASTER.zip

gi|00000000|ref|PRLF01000028.1| Faecalibacterium prausnitzii strain APC924/119 26745, gc%: 53.09%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
126.5Kbincomplete3023191-26745 info_outlinePHAGE_Lister_A118_NC_003216(1)53.10%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PRLF01000028.1| Faecalibacterium prausnitzii strain APC924/119 26745, gc%: 53.09%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
1191..203attL0.0Showinfo_outline
27434..8918PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; C4N21_13405; phage(gi725950572)1.41e-32Showinfo_outline
3complement(9045..9356)hypothetical protein; C4N21_134100.0Showinfo_outline
49429..9905DUF386 domain-containing protein; C4N21_134150.0Showinfo_outline
59925..10164hypothetical protein; C4N21_134200.0Showinfo_outline
6complement(10251..11567)PHAGE_Clostr_CDMH1_NC_024144: putative AgrC; C4N21_13425; phage(gi640884894)9.78e-11Showinfo_outline
7complement(11585..12307)DNA-binding response regulator; C4N21_134300.0Showinfo_outline
812900..14366aminotransferase class V-fold PLP-dependent enzyme; C4N21_134350.0Showinfo_outline
914379..15236polyamine aminopropyltransferase; C4N21_134400.0Showinfo_outline
1015233..16111agmatinase; C4N21_134450.0Showinfo_outline
1116151..17410saccharopine dehydrogenase; C4N21_134500.0Showinfo_outline
1217410..18621carboxynorspermidine decarboxylase; C4N21_134550.0Showinfo_outline
13complement(18818..20422)PHAGE_Clostr_phiCTC2B_NC_030951: protector from prophage-induced early lysis; C4N21_13460; phage(gi100001)3.39e-50Showinfo_outline
14complement(20642..21196)PHAGE_Clostr_phiCD27_NC_011398: putative phage repressor; C4N21_13465; phage(gi209901281)2.43e-09Showinfo_outline
1521367..21573PHAGE_Brocho_BL3_NC_015254: gp33; C4N21_13470; phage(gi327409425)7.73e-06Showinfo_outline
1621783..21977hypothetical protein; C4N21_134750.0Showinfo_outline
1722101..22517hypothetical protein; C4N21_134800.0Showinfo_outline
1822517..22804hypothetical protein; C4N21_134850.0Showinfo_outline
1922985..23929PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; C4N21_13490; phage(gi100015)6.26e-18Showinfo_outline
2023929..24540hypothetical protein; C4N21_134950.0Showinfo_outline
2124537..25067PHAGE_Lactob_Ld25A_NC_025415: hypothetical protein; C4N21_13500; phage(gi712912190)9.02e-08Showinfo_outline
2224940..24952attR0.0Showinfo_outline
2325064..25453PHAGE_Salmon_SKML_39_NC_019910: hypothetical protein; C4N21_13505; phage(gi431809245)1.60e-30Showinfo_outline
2425637..26170PHAGE_Staphy_SA12_NC_021801: single-stranded DNA-binding protein; C4N21_13510; phage(gi526178045)3.19e-29Showinfo_outline
2526183..26745PHAGE_Strept_Abc2_NC_013645: hypothetical protein; C4N21_13515; phage(gi281416415)1.91e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 26745 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download