Submission Results

Sequence Name: Not Available

GenBank Accession Number: PSNX01000006.1

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|PSNX01000006.1| Zhizhongheella caldifontis strain BCRC 80649 179102, gc%: 67.25%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
128.7Kbintact1303317416-46185 info_outlinePHAGE_Synech_S_CBS1_NC_016164(5)69.34%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|PSNX01000006.1| Zhizhongheella caldifontis strain BCRC 80649 179102, gc%: 67.25%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
117416..19389PHAGE_Synech_S_CBS1_NC_016164: large terminase subunit; C1704_07870; phage(gi356870795)1.73e-140Showinfo_outline
219402..19893PHAGE_Sinorh_phiN3_NC_028945: capsid-related protein; C1704_07875; phage(gi971758981)1.09e-35Showinfo_outline
319893..20285PHAGE_Synech_Syn5_NC_009531: tail fiber; C1704_07880; phage(gi148724489)1.73e-05Showinfo_outline
420285..20506PHAGE_Stenot_S1_NC_011589: putative peptidase b; C1704_07885; phage(gi213163904)2.44e-06Showinfo_outline
520506..21972PHAGE_Synech_S_CBS1_NC_016164: lambda-like phage portal protein; C1704_07890; phage(gi356870797)2.51e-72Showinfo_outline
6complement(22149..22649)cupin domain-containing protein; C1704_078950.0Showinfo_outline
722734..23750WYL domain-containing transcriptional regulator; C1704_079000.0Showinfo_outline
823998..25236PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; C1704_07905; phage(gi46402091)5.46e-57Showinfo_outline
925240..25617PHAGE_Aurant_AmM_1_NC_027334: head decoration protein D; C1704_07910; phage(gi849119857)1.23e-08Showinfo_outline
1025686..26687PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: hypothetical protein; C1704_07915; phage(gi428782731)2.25e-115Showinfo_outline
1126701..26985PHAGE_Synech_S_CBS1_NC_016164: hypothetical protein; C1704_07920; phage(gi356870803)3.05e-05Showinfo_outline
1226982..27407PHAGE_Synech_S_CBS1_NC_016164: hypothetical protein; C1704_07925; phage(gi356870805)2.49e-07Showinfo_outline
1327416..27637hypothetical protein; C1704_079300.0Showinfo_outline
1427640..28392PHAGE_Stenot_vB_SmaS_DLP_5_NC_042082: hypothetical protein; C1704_07935; phage(gi100014)2.37e-75Showinfo_outline
1528403..28831PHAGE_Pseudo_JBD88a_NC_020200: hypothetical protein; C1704_07940; phage(gi448244730)1.61e-05Showinfo_outline
1628992..29633hypothetical protein; C1704_079450.0Showinfo_outline
1729633..32332PHAGE_Synech_S_CBS1_NC_016164: tail tape measure protein; C1704_07950; phage(gi356870809)2.11e-30Showinfo_outline
1832335..33405PHAGE_Caulob_magneto_NC_019407: hypothetical protein; C1704_07955; phage(gi414088609)4.07e-09Showinfo_outline
1933402..35045PHAGE_Burkho_BcepNazgul_NC_005091: conserved tail assembly protein; C1704_07960; phage(gi34610155)4.07e-07Showinfo_outline
2035048..35833PHAGE_Pseudo_PaMx11_NC_028770: putative virion structural protein; C1704_07965; phage(gi971741797)1.13e-33Showinfo_outline
2135851..36078PHAGE_Pseudo_PaMx74_NC_028809: putative virion structural protein; C1704_07970; phage(gi971745300)5.12e-24Showinfo_outline
2236075..36284PHAGE_Pseudo_JBD67_NC_042135: rnaseH; C1704_07975; phage(gi100048)1.97e-13Showinfo_outline
2336284..38557PHAGE_Pseudo_PaMx11_NC_028770: virion structural protein; C1704_07980; phage(gi971741800)1.76e-147Showinfo_outline
2438557..39171hypothetical protein; C1704_079850.0Showinfo_outline
2539184..39534PHAGE_Pseudo_PaMx28_NC_028931: virion structural protein; C1704_07990; phage(gi971757103)2.45e-32Showinfo_outline
2639602..39904PHAGE_Rhizob_vB_RleS_L338C_NC_023502: hypothetical protein; C1704_07995; phage(gi588498690)3.64e-16Showinfo_outline
2739901..40377PHAGE_Liberi_SC2_NC_019550: hypothetical protein; C1704_08000; phage(gi423262551)1.48e-11Showinfo_outline
2840377..40871PHAGE_Halovi_HCTV_5_NC_021327: HNH protein; C1704_08005; phage(gi509140201)4.02e-32Showinfo_outline
2940868..41329PHAGE_Bacill_B103_NC_004165: morphogenesis protein; C1704_08010; phage(gi22855163)3.07e-20Showinfo_outline
3041411..41746XRE family transcriptional regulator; C1704_080150.0Showinfo_outline
3141762..42517PHAGE_Mycoba_Squirty_NC_026588: hypothetical protein; C1704_08020; phage(gi764159933)8.42e-62Showinfo_outline
32complement(42512..43438)PHAGE_Gordon_BaxterFox_NC_031226: sliding clamp DNA polymerase; C1704_08025; phage(gi100042)4.20e-14Showinfo_outline
33complement(43450..46185)PHAGE_Bacill_0305phi8_36_NC_009760: RecQ helicase; C1704_08030; phage(gi156564053)5.37e-09Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 179102 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download