Submission Results
Sequence Name: Not Available
GenBank Accession Number: QUFJ01000001.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: QUFJ01000001.1.PHASTER.zip
gi|00000000|ref|QUFJ01000001.1| Ruminococcus sp. AF25-28AC AF25-28AC.Scaf1, whole genome shotgun 457104, gc%: 42.32%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 17.7Kb | incomplete | 30 | 10 | 352475-370212 info_outline | PHAGE_Clostr_phiCT453A_NC_028991(2) | 43.16% | Show info_outline |
Region DNA
>1 352475-370212 AAAACGGAATTATATTGCGAGGAAAATTATGAAGAATAAAAAGATTAAATGCGATATATA TACCAGAGTATCCACAACCATGCAGGTAGATGGCTACAGTCTGGAGGCTCAGAAAGAAAA ACTCAAGAGATATGCGGAATTTCAGAATATGGAAATCGTAAATGAGTATTCCGATGAAGG TAAGTCTGGAAAAAGCGTAGAGGGCAGACCGGAATTTCAGAGAATGTTAGATAATATTGA GAATGGAACAGATGAGGTACAGTTTGTACTGGTGTTCAAGCTTTCCAGATTCGGTCGTAA TGCGGCAGATGTTTTAAATTCTTTGCAGAGGATGCAGGATTTTGGAGTGAATCTGATCTG TGTTGAAGATGGGATTGACAGCTCAAAAGATAGTGGAAAGCTGATGATTTCTGTCCTGTC TGCGGTGGCAGAGATCGAACGGGAGAATATCCTTGTTCAGACAATGGAGGGACGTAAACA GAAAGCCAGGGAAGGAAAATGGAACGGTGGATTTGCTCCATATGGCTATGAATTGGTAAA TGGAGAATTGCAGATTGCAGAGGATGAAGCGGAAATTATTCGTCTGATCTATGATAAATT TATTCATACCAATATGGGAATCTCTGCGATTGCTGCATGGCTGAACCAGCATGGATATAA AAAGAAAAAACGACAGAATAATACACTGGACGCATTTGCCGCATCATTTATAAAAGGCGT TCTGGATAATCCGGTATACTGTGGAAAGCTGGCTTATGGACGAAGAAAGAACGAGAAAGT TTCTGGAACAAGAAATGAATATCGCATTGTAAAACAGGAAAATTATATGCTGCATGATGG TATCCATGAAGGGATTGTTTCAGAAACAGACTGGGAGCTAGCTCATCAAAAACGAGAAAA AACAGGTGTGAAATATGAAAAGACACATAGCCTCAATCATGAGCATATTTTATCCGGAAT ATTGAGATGTCCATTATGTGGAAGCGGTATGTATGGAAACGTGAACCGAAAGAAAAAGAA AGACGGAACCTTATATAAGGATTATTTCTATTATGCCTGCAAACATCGTCGTCTGGTAGA TGGTCATAAATGTGGATATCGTAAACAATGGAGCGAGGAGAAGATTAACAATGCAGTGGA AGAAGTTATTCGGAAACTGGTGAAAAATCCTAAATTTGAAGAAGCAATTCTGAATAAAAT CGGTTCAAGAATAGATACAGAGGAAATAGAAAAAGAGATTGAAGGATTGGAAAAGCAGCA CAAGCAGTTGACCGGAGCAAAAGCAAGACTTGGACAGCAGATGGATAGTCTGGATATCAT GGATAAATTTTATGAAAAGAAATATCAGGATATGGAGACACGCTTATATCGTCTATATGA TGAAATTGAAGGCGTGGAGAACAGTATAGAAGAAGTTAAGAATCGCCTGCTGAATATCCG GCAACAGAAAATATCAGAAGAAAACGTCTATCAATTTCTTTTATATTTTGATAAACTATA TGATAAGTTCACCGACCTGGAGAAGAAAGAATTTCTTAACAGCTTTGTGGAACAGGTGGA CATTTACGAGAAGGAGCAGCCAGATGGCAGATTCCTGAAGCACATAAAGTTCCGTTTTCC GGTGTATTTTGGAGATAGGGAAATACAGGAACTTTGTTGGGACAACGAAAGTATCGTTGA GACAGTAGTCTTGATGTCAAGGAAAGATAAATAAAGCCCGGTTTTCTTATATGGAAACAT AGCTACTGCAAAATGTGTGTCAGGTTGTAACCTCGGATTAGATGTCACGATTTGAGACAG TGGATTAGATGTCAGGTATTTTGGGATGATTTTTGGAAAACGAAAAAGGATGACAACCAA TCTGGCAACTCGACCATTTTTGCGGATTGCAGGCAGTGGAATAGATGTGAGGAGGAATGG TGTTTATGGATAGAAATTATTTGTATCAAGTGGATATACGTGAGTGGATAGAAAATGGAT TAGATGCTGAAATTATGGTTCCGGTTTTTGGAAATAGAGTTGATAAAAAATACGATGTGT ATCTTCAAAGTTTTTTACTTCCAATTGATGCTGTTGAATCAGATATGCAAAATGATACGT ATAATGCAAATACAATGGAGCCCGGAATAACAGTATATGGTTCATGGGAAAATGATGAAA AGGTGTATCATCGATGGGGAAATGATGATGATTTTGAACCTCTTATCATTAAAAGAAATT TTAATGGTGTAGCAACAGATTCGGTTGAAGTTGCAGAAGAATTTAGGCTGTTGTTTAATC TATATTTTAATTCACAAAAAAATGAATATGTTGATGTTTCAGATGGAGAGGGAATTACTG TTGTTAAAATGAATGACAATGGATACATTACTATACATAAAAGATATTTAAAGACATATT TAGCAGTAAAGGAAAAGGCATTGATTGTTCATATTGACAGTAGATGTGTTGCTCTTGATG CATCAGAAAAGGTTGAGGAGGATGGATTAGCGTATAGAAATGATGAAAATTCTATATTTT ATACATTGAACATTGGAAATACATCTACGGGGACCAAAAGAGAGAATTATTCATATATTT TTGCTAAAAACGTTATTTGGGCTTGCAGTTTATGTGATAGCAACATATGGCCATACAACG AGGAAAAGAACTATGTCGATTTCATTATTGGAATAGATGAAAATGGAAAAGAAATACGTC ATACATGTAATCCAAGCTGTTTAAGTAATTATTTTGGCGCAAATCCAACTGCACCTCATT ATTTAACACCAGTCTATTTTGATGCAGCAGTTTTAAATAAGTATTATTCTAAACCAGAGA TTTATAAAGTTGAAGATGGTATTATACGATGTGGCGTACTGTGGTCGTTATATATTGATA ATAGTAATTCTGAGTATGTATCAGCATATTTGGGAGATTTAGGAAGAGATTTACCAAGTG AATCAGAGCAGCATTACTGGAGAGGTTTTAATAAAGCAGTTGGTGGTAAATTGAGCCCGA CAAAAGTAAAAAGAGATTTTATGTGCATTGCATCTGATTCCGAGTCTCCGGATTTTGTAT TTAAAAGAACATATAGGAGAGTAAACCAAGCTTATGAAGATAGACTTGGTTGGCCATTAT TTTTGCCATTAACAGAGCAAGATACATATAACTTTGAAACCCTGCGAGTACCAGTTAATA ATTCAATTGCAGAGATGGATATGCTTGTTCTCTCTTTAGTGAAAATATTAATTGATTCTT TGAATGAGAAGAAAATTACCAGTCAACTGACTGGAAGTTATGAAAAGTTGGTGGGGAGTA TATCTAAATTAGAGGCTTGGTTAATTGAAAAAGATATAGAGAATTATGATGAGCATATAA AATTCTTAAGAAATTTGCAGGAATTACGTTCCAGTGGAACAGGACACCGTAAAGGGAAAG GATATCAGAAAATAACAAAAGCCCTTGATGTGAAGAATGAAAATTATGCAGAAACATTTT CTAATTTATTAAATAGTGCCACCGCCTTTTTGGAATTTATGGAAGAAAACATGGAAAAGA TAGTGTAATAGTAAGCTCCCCATCACTGGATATCATAGTGACGAGGAGCTTTGTTACTTT TTAGATTATTATGCTTCAATCTCAATTTTCAGTCCGGACTTGAGTTCCACTGTGAAGTGG TCATCCCAGATAATGATGCGCTCAAGCCAGCGCTTTACCAAGGCTTCGTCGAAGGCTTCA AGGTGTGCGTGCTGCTGCTTTATAAAATCCTGCAACTCGTTGATGCGTGCAATCTGTGTG TCCCTGGCGGCAGTGTCAACCGTGCATTTCTCGCGCTGCTCCCGGAGCTTGAAGATCTCA TCGGCGGTATTTTGCTGAGCGCTTCGGATCACCTTTGCGATGTTCTGCTGGAGCTGTGCC TAGTAGGTGGACTTATCGCCAAGGAGCGTGTTGATGGCCTGAACTACCACATTCTCTAAT ATCGTCTCATTGACGGTTCTTGCGTGGCATTCCTGCCCGGTTGGCTCCAGTCTACTGATG CAGCGCCAAACGATGGATTTGCAACCGCGATTGTTCCAGTGGATTCTACGGAACATTTCA CCGCATTCGCCGCAAATGACAATCTGTGCAAAGCAGTGGTTGCAGCTGTAGGTGCGCTTT TTGCCATTGGTACTGGTCTTGACTATTCGCCTGCGTACCAGCTCTTCCTGCACCCGCAAG AAGATGTCCTTCGGAATAATTGCTTCGTGGTTGCCTTCCACATAGTATTGCGGAACAATG CCATTGTTCTTCACTCTGGTTTTATTCAGAAAGTCTGTGGTGTAGGTCTTCTGAAGAAGG GCATCACCGATGTATTTTTCATTTCGAAGAATCTTGTTGATGGTGCTGGTCCACCATTTT GTTTTGCCAGCGCCGGTGAGGATGCCGTCTGCTTCCAGACCTTTTGCAATCCGGTCCATC GAGTAGCCCTCAAGGTATTCACGGTAGATGCGCTTTACCACCTCCGCTTGCTCTGGATCG ATGATGAGATTCCCATCTGCATCCTTGGTGTAGCCGAGGAAGTGATTGTGATTTACCTGT ACCATCTTCATCAGATGCGAAATCAGACTCAGCACTTGCCTTACCACCAAGAGGCTCACC GTCACGAATCTTCTGCAGATTGTTAAGTCCACAGGCGATCCCCTTGTTACCGGAGCTGTT GAATGCATAGAAGCTGATGCTGGCGCGACCATACACACCGGAGTAAACCTCGGAGCGAGT AAGAATCGGATTGCGATCTGCATCCACGATGCCAGGAGCAGAGATTGCATTGGCATTTAC GAAATAAGCATTGGCGTAGGCCGGATCGTCCGGACGCTCCATGTCGCCATCACGAAGTGG AGTCTTGATGACAGAGAGGGCAGGTACAGACTTGCCATTGCCCTTGAGCTTGGCCTCGCC CTCCTTGTAAGCGGCCTCAATGGCAGCTTCAATCTTGGCGATGGTCTTGGTATCAGACTT CGAAATAATCAGAGATACGCTGTACTTCGGTGTACCTCCATTGATGGATTTCGGCTCCCA GACGTTGGCATAAGACCAACGAGTGTCAGGACCAGTGATTACCTTCATAGGATTGTTGAT TTTTACATTCTTGTTCATTTAATTTTCCTCCATAAAATCAGTTTTTGCATTGTTCATTGC CGGACGTTTATCGCTCTCCGGCACGAGCGTTGGTTTACCTTGCGGCTTTTCAATATAGGC GGTAAGCAGCTCATCGAATCTGGATTTGCCAAGACGCTTCTGCATGGCAGTGATACCAAG GAGCTTCTTTTCATATGAATCAAACCCGGCATCTGTAACTGCCTGGATGACTGCCTCCTC ATTGGAATACTTGCGGTTGGATCTACCTTCGACCAGCTTCCAGCCAGCCCATTCCTTACC GCTGATGGCCTGCTGCAGAGCATATTCCTTGATGTCGGATGCCCAGGCGACTAATTCATC TGCGCGGGAGAGGATGTATTCAATCTCCGAATCCTCTAAAAAAGGTGGAAGCTTGAAATC GTACTGAGCCAGTGTGAGATTGGCCTCGGCTCTGGCACGGCATTCGTGCTTGGCCTTACA GAAACCACACCATTCGCCACAGAGGAAGTTCCCATCCCCGGCAAAGGCAAGATCTGCGGT CGGCTTCAGCACTTCATCCGCCCACTTGTACAGCGCATCCTTGAAAATTTCAAAGGTGGA AATATTCTGACGCCTTGGCTGGTAGATGGTCATGCTGACATTATCAATGTCGTAGATGTC ATCAAAGAGCTCCAGGGCTCCAAGCGCATAGCACTTCATTTGCGGATTATCGGTCGCATC TACGAGGACTCCAAGACCGTGCTTGTAATCGCATATTCTCAAGGTGCCATCTGCAATAAT GATGCAGTCAGCGGTTCCGAAGCCCTGTTCCACCCAGCGAAAGAAATCTACACGCTGTTC AATCAGAACCTTCGGATCAGCGCAGCTTTCCTTGGCGGCCTCTACCATTTCAAGGATGTA GGCGGCATAGCCATTGGCACAGTCCTCCATTTCCTCGTTGTACCAGGTGAGATTCTCCGT CGGATCACTGGCATCCATCCCCAGGGCCCTCTTTAGCTTGTACTCACAAAGCTCATGAGC ATCAGTGCCTTCCGCAGCATAATCGCTGCCTTTATCCTCGTATGTCTCGCAGAGCCTTGC GGAAGGCGGGCAGTGGAGCCAGCGGTCCGAAGAGGAAGCAGATAAGATAGCATGTCCCTT AGGTGGCATCGTCAAGTACCTCCGCATCCTTTAACAAGGCTTCATAGTGCTTCGGATCAA CAGCAGATAGCTTGGAAGCACCATACTTCTGAAGTAATGTACGGATAGCAGCGGTATGCC CGGCACGGGACTTTTCTGCTAAGACAGCTCGTACATTCTCAAGCTTCAAATCCGGTTCCT TTTCTTCCTTGGCAGCAGGCTTCTCGACAGGTGCGCCGTCAGCAGTGTCACCAAACTGTT CTGCTAACCAGTTGGCTGCTTCATTAATAGCAGCGGCTGCACTGCGCAGCTCTTCGATGG TCATAGCCATATCGCTCATTTTGCTCATAGCGACGTTCTCCTTTCTCTGATTGTCTTTGC TGTGCGAGGATTGTCATGTCTCACGCCATTCTTGCGGATACGTGGGAGATTGCATTCAGT ACTGCAATCAGCTCCGTGTCGTTACCGCCTGAATCGAAGTTGGACTTCTTCATGTGTTTC ACCTCCGTTTCTGTGATGGTTAAGGCTTGTTGTTTCGTGCCTTACACCTTCCACTGGAGA TGAGTGGCGGATTTGAGCGGAGAAAAGTTGAAAAAATATAAAATCCCTCCGGGCATCGGT TGATGGCATGCCAAGAGGGATGAATTGCTACATACGATATGTAGGATTAATGGCCACGGA CCTTACGGAGCTCCGTGCGGATCTTCTTCATCTGATCAGCGAAGGTACGCTGCGGGCGAC CGAGCTTTTCAGCGATTGCACGATCTGAGATCTTGTAATCATCAAGCCAGCACTGAATGA TGGTATCAGCATCCGGATCGAGCTCACGCAGTCTGGCAAAAAGCTGCTCCAACAGCATAC GGTCGGAGATGACTTCCTCCATAGGTTTACTGCGGTCGGAAATATAGTCGCCAAGGGTGC CGCTGCCATCTGAGAGAGGTTGATCCAGAGAGGTGATGTCTCCAGCAGCGTGATATTCAC AGTCAAGGCAGTCGCCATCGCATCTCCATATGAAGCGATATGGGCACATGCACCTGCCGT GATCCTGCTCCTTGTGGCGAATGCGGTCGGCTTCCTTATAAAATGAATTGTGCTGTTCCT TGGTGACCGGGACCTTTTCGCCGGTGCTGCGAACGTAAATAAAGTAAGTCTTCTGATTGC CATTGTTTTGCATAATGAAAGCCCTCCTTCGGCTTTTGCCGAAATGGAGAGCTCCAGACA TGCAAAACCAGACCACAGGCGTGAGGGCATACCGAAGGATTACTCCATTTCGGCTGCACC TCACTTCCGGTGATCGGTACAGTATTTGATTGTCATCGGTAGTCACGTGGAACCGGAAAC ACCCTGCGCAGATGGCTCCCACGTGCTAAAGCAAGTATGCCATTTTTAGGGATCGGAACC TCAGACACAGGCATGTCCGTTTTTGCAGTGCTGATGGGCAGAAACGAGAAGGCCAAGATG AGCTTTACATTGAAAAACGGGCAAAAAAATGCCGGACATAGTTGTGTCCGGCATTGAAAT TTGAGAACGCACAAATAAAAAATAATATCAACAAATAACAGAAAACTATTGAAAAAACAT ATTTATGATTTATAATAAAATAGATGAGTTGTATTCAGATTCAAATTACGAGGTGAGAGC ATGGAAGAAATCATGAATGACAAATGGATAGGCATAGATGAAGCTGCGGAATATTTAGGA ATCAAAACAGTCACTCTTCGTAGCTGGATCAGAAATGGCAAAGAAGATTTGCCTGCTCAA AAAATCGGGAAACAGTGGAAGTTTAAAATTTCCGAACTCGATGAATGGGTTAAGAGCGGT AAAAGCGCTGACTGATTCATGAGGAAAATCAAAGAAAATCATTAGACAAGGAGCAGACAA AGATGGCTGTCAAGAAAACGCAATTATATGCATCGCTGTGGGCGAGCTGTGATAAACTTC GCGGAGGTATGGATTCCTCAGAGTATAAGGACTATATCCTGACATTTTTATTCATGAAGT ATGTCACTGATAAATTTAAGAATAAAGGAGCATATGAAGACATTAAGGTCTTTGATAAGG CACATGATAAAGATCCAGATCCAGAGAAGCGAACGGGCTGCTCTTTTGACGACTTTATTG CTCTGAAGGGAAAAAAGAACATCGGCGAGGGCATGGATAAAATCATAGCTCGCCTTGCTG ACGAGAACACTGACCTGAAGGGTGTTATTGATATTGCTCATTTCAATGATGAGAAGAAGC TGGGAAGCGGTAAAGAAATGGTCGATAAATTGACTGATCTTATCTCTATCTTCCAGCGTC CGGAACTTGACTTCTCTCGAAACAAGGCAGAAGGTGATGACATCATCGGCGATGCCTACG AGTATCTAATGCGTAAATTCGCTACAGAGAGCGGGAAGAGCAAGGGACAATTCTATACGC CTGCAGAGGTTTCCAGAATTCTTGCTAATGTAGTAGGCATTAGTCACTGCACGGATGCCA GCGCCACGGTATGCGATCCGGCTTGTGGTAGTGGTAGTTTGTTGATTCGGGCTATCGATG CAGCGCCATTTCCAATTATGGGTTATGGTCAGGAAAAAGAAAGCACAACAGCTGGTCTTG CTAAGATGAATGCTGTTCTGCACCGTAAGGCTGAAATTATCATCAAGAGCGGTAATACAT TCTCAAATCCGCAGTATATGGATAAATCGGATAACTCTGTACTTGAGCGTTTTGATTACA TAGTGGCAAATCCGCCTTTTTCCATGAAAAACTGGCGCGATGGAATTGCAGGTAAAGAAT ATGGTCGGTTTGAGGGCTATGGGGATATGCCTCCGGAAAAGAACGGAGATTATGCTTGGC TTATGCATATTCTTAAAACTTTAAAGTCAAATGGTAAGGCTGCGGTTATTTTGCCTCATG GAGTCCTCTTCCGTGGAAACGCAGAGGCTACCATCAGAGAAACTATTATAAAGAAACATT GGATCAAGGGCATTATTAGCCTTCCGGCAAACTTGTTTTATGGCACTGGAATAGCTGCAT GTGTACTCGTGATTGACAAAGAAGGTGCTGCAAACCGACAGGGCATCTTTATGATTGATG CCAGCCGTGGATATGTTAAGGATGGCAATAAGAATCGTTTGAGAGAACGCGATATCTACA GAATTATTACTACCTTTAATGAGCAGATTACTACAGATCCTAAGTATGCGCGTTTCGTAT CTAATGATGAAATTGAAAAGAAGAATGAGTATAACCTGAACATCACCCGATATATTGACT CCACAGATCCGGAGGACATTCAGGATATCTATGCGCACATCCATGGAGGTATCCCTGCGG TTGACATCGATGGCCTCTCCAAGTACTGGGAAGTATTTCCTTCGTTGAAATCTGAGCTGC TGTCAACTATTAGCGAAAAATACTACAGCTTAAATGTTGAGCACGAAAGTATTCGACAAA CGATATATAAAAATACTGAATTCTCGGAGTATGGTGAGAAACTCGACGAGGCATTTGTTG CATGGAAGACAAAAGAATATCCGGTTCTTTCAACTCTTGATGAAGACGTGTCTGCAAGAG AGCTGATTGTAAGTCTTGCTGAAGATATCATTGCCGAATTCGAACACCTGACACTGATTG ACAAATACGATGTATATCAGGTGTTGTTAGCCTATTGGAATGAGGTCATGAACGATGATG TGTCACTTATCATAAGCGAATCGGATGGCTACACCAACGCCAGAGCGACAGACAATATCG AGGAAGAAATTACGCAGGGAAAGAATAAGGGTGAAATGAAGGTCACCGGATGGGAAGGTC GTTTGATCCCGAAATCTATTGTAATAGATGCCTTTTTCCGTGAAGAGAAGAATGCCATAG AAGAAGCCGAGAGTATTGTCGCAGAGACGGAGTCCCAGCTTTCTGATCTGATTGAGAGTG CGGACGAAGAATCTGCTCTTGCTGATGTGGTTGAGAACGGGAAAGTTAAAGCGAAGGATA TCGAAGCCAAAATAGTTGAGTTGACAAGCACGATTGAAACAGAAGAAACCATAGAGCTCG AAGTGATCCGCACGGATCTCCAGCTTGTCAATACGAAGAAACGGCTGGAAGCGTACCTTG TGAGGCATCCGCTTTGCAAGAGTGCAGTCAACGAAAATGGAAAAATCACAAAGAGCTCTA TTGAATATCGGTTACGTATTATTCGTACAGAAGAATGCGTACCCGAGAGCTTGCAGGATG ACGTAAACCAGTTGAAGGCAGCTTTAGATCTTTGTGGTAAGGTATCAGATTACAATAAGG TTGTCAAAGAGCTGAATAAGGCTCTGGATGAAAAGTGCCGGGCAAGATACGAAAAATTCA CAGATAATGAAATTTTAGAGCTGCTTGTGAACAAGAAGTGGTTTGATAGCATTTTCTCTG GCATCACCGATTTGTATGCTGAGATTTCCCATCGCTTGACGAGTAGAATTATTGAACTTG CTGAGCGATACGAGGATACACTTCCAGAGCTTGACAAAGTCACTGCTGAATATGAGGCAA AGGTAAAGTCTCATCTTGAAAGGATGGGATTCAAATGGTAAATGAAATTTTAAAAGCAGA TATTCCGGATGACTGGAATATTAAGAAACTTGAGCCAGATGTTGGATTTGTTAGAAGTGG GAAACGCTTACCAAAAGGATATTACGTAACTTCGATACCTACACAACATCCATATATTAG AGTTGCAGATATGAGAGCAGGGTATGTTGACGTTGATGGATTAATGTATGTCCCGGACGA AGCATACTTTCGGATACAAAAATATAGAATATATAGAGATGATATTTATATTTCTGTTGC TGGAACACTTGGTATTGTGGGGCAGATACCGGATTATCTTGATGGAGCTAATCTAACAGA AAATGCAAATAGAATTACAGACATTAAATGCAATATAAAGTTTTTAATGTATTGGTTAAT GAGCTCAAAGATTCAAGGATTGATTAATCAGACGCAAACATTGGGAGCACAACCTAAGTT GGCTTTAACACGAATTAGAAACTTTCCAATCATCCTTCCTCCAATAGAAGAACAAGAGCA AATTGTTGAAGTATTGTGTAATGTAGACACTCTTATCACTAATTTAAGAAAACTCATACG TAAGAAAAAGGATATTCGCCAAGGAACAATGCAAATGCTTGTAACTGGAAAGAAACGATT AAGTGGATTTGATGGAAACTGGAGAGTGACGACTCTAGATCAGCTCTGCTATATAGTGAC AAAGCAAACAGGATTTGATTATAGCGCAGAGATTAAGCCGTCGCTTGTGACTACACCACA AATTGGAACCATCCCATTCATTCAAAATAAGGATTTTGAGGCGTTTGATATCAATTACAA TACAGACTTTTTCATTCCCTATGATGTAGCAGAAAAGTATCCCAGGATCCTTCTGAATGA GGTGTGTCTACTGATATCAATTTCAGGGCGCATAGGAAACGTTGCAATCTTTGATAATGA GCAGACTTCGTTCGCTGGAGGAGCGGTTGGTATTGCAAAACTGTATGAGCCTGAATTGGC AAGTTGGTGCATGCTGTATTTGTCTAGCAAGGACGGACAAGAGCAGATTTTCTCCAATGA AAAAGTTGGAGCACAGCATAATTTGACGGTAGCTGATGTCCGAAAACTCGAAATCAAGAT GCCTGCAAAGTCAGAGAGAGAAGCTATTATCAAAGTTTTAACGGATATGAATGATGAAAT CGAAGTCCTTGAAGAAAAATTAGATAAGTATCAAAAAATCAAACAAGGTATGATGGAAGA ATTGCTGACCGGCAAGGTCAGATTAGTGTAAGGGGGTGCCTGTCAGATGAGTATTGGTGA TGCCGAAATTAAAACACAGGAAAGAGTGATCCGTTTCTTTAAAGAACCGGAGATCTTGGG CTACCAGTATATTGGTAACCTGTCAGATTATCCGAATAAGAACATCAAGGAAGATCGTCT GCGCCAGTACCTTCGACTGAAGGGCTATGCAGACAAGCTGATTGATGCTGCTATTATGCA GCTTCAGCAGGAAGCCGGGAATCTTTCGCGTGGAGTTTATGATGCTAATAAGACTGTGTA CTCACGCTTGAAGTACGGAATTCCTGTCAGCGAGAGTCCAGAAAAATCTCCGGTGACAGT AGAGCTTATTGATGAGGCTAATCCATTGAATAATGACTTTGCCATCGCTGAGGAAGTGAC GGTCGTTGAGCAATCGGAAAAGAGGCCGGATCTTGTCGTTTATTTGAATGGTATAGCAGT GGCAGTTATAGAGCTGAAACGAAGCGGCGTCTCTGTATCCGAGGGTATTCGCCAGAATCT GACAAACCAAAAGAATTCATTCATACAGAGCTTCTTTACCACGATACAGTTCTGCATGGC AGGAAACGAATCTGAAGGACTGCGCTATGGAACACTCCTGACTGGGGAGAAGTTCTACAT GGAATGGAAGGATGACGGTTTCAAAGAACATGAGGAAGAACGTGATCCGGTAGATGTTCG TATCAGTAAAACCTGCGAAGGCATAGAGAACAAACTCCTGAAGCAGATATATGCCATGTT CGATAAGGAACGTTTTATCGACCTTATCATGAATTTTGTTGTCTTTGATAAAGGCATCAA AAAAGTATGCCGGTACAATCAGTATTTTGGCATCAAGCGTACCCAGCAGAGGCTTACTAA TCTGAGAACGGAGCTTCACAATCCGAACAGAGATCCGGATAAACCGATGGGTGGTATTCT TTGGCATACACAGGGTTCCGGCAAAACGCTGACAATGGTATGGCTTGCAAAATGGATTCT GACACATTGGGCGGAGCTTAATGCTCGTGTCCTTATCGTGACAGACCGAGATGAGCTTGA TGAGCAAATAGAAAAAACATTCACTGGTGTGGATGAGAATATTGCTCGTACCAAGAGCGG TAAAGATTTGCTGAATCGCCTGAATGTATATGATGATTCGCTGATTTGCTCGCTGGTACA TAAGTTTGGACGTCGTGGTGGTGAAGCGACAGAGAATGACTATGACAAGTACATAGAAGA GCTGAAAGCGTCCCTCCCTGCCAATTTCGAGGCAAAAGGAAATCTTGTGGTGTTTGTTGA CGAATGTCACAGAACACAGTCTGGTAAGCTTCATACGGCGATGAAGACCATCATGCCGAA TGCTGTATTTATAGGCTTTACGGGCACTCCACTGCTGAAAAGGGATAAGAAGATCAGTAT TGAGGTTTTCGGTACATATATCCACGCTTACAAGTATAACGAAGGCGTGGCCGACGGTGT CGTTCTGGATCTTCGTTATGAATACCGCGATGTTCCACAGGATTTGTCTTCACAGGATCG TGTTGACCAGTGGTTCGACGTAAAGACCAGAGGGCTTTCCTCTCGTGCAAAGGCAAAGCT CAAGGAGAAGTGGGGCACGATGCAGAAGGTGTATAGCTCCCGCTCGCGTCTTGAAAAGGT GGTATGGGATATCATTCAGGACTTTAATATGAAGCCGCGTCTGATGGATGGAAACGGCAA TGCGATTCTTGTAGCCGATGGTATTCCTACGGCCTGTAAGTATTACGAAATTTTCCAGCA GATGGGCTTTAAGAAGTGCGCCATCGTATCTTCCTATACACCGAATAAGGGAGAATTGCG AACTGACACCGTCAGCGACGAGGATGATACAGAAACTTTCCTTAAATACGAGACATATCT GAAGATGCTGGGACTTGATCCATCTGATCTTCCGAATGCGGGATCGGTTCAAGCCAAGGT GGAGGAATTTGAAAAGGAAGCAAAGCGCAAATTCGTAGAGGAGCCTGCGAATATGAAGCT CCTCATCGTCGTGGACAAGCTTCTCACCGGGTTTGACGCACCTCCTTGCACGTATCTATA CATTGACAAGAGAATGCAAGACCACGGCCTTTTTCAGGCAATCTGTCGAGTCAATCGTCT TGATGATGATACGAAGGATTTTGGCTATATCGTGGATTACAAGCAGTTGTTTGGACAGCT CCAGACCGCAATGAAGGACTATACTTCCGGCGCTTTTGAAGGATATGATCCGGAGGATGT AAAAGGACTTGTCAAAGATCGCCATGATGCTACGGTATCCTATTTTGAGGAAGTGTATGA TGCTGTCGAGGAACTCTGTGAAGGCGTCGAGGAACCACGTGGAGAGATCCAGTACATCCA TTATTTCTGTGGCGTTTCTGGACAGTCTGAGGAGAGCGACGAGATTTATGCACGCCTGAG AGAAAAACTCTATCGTCTTGTGAGCAGTCTTGTCAGAGCCTTCGCAGAAGCAAAACCATA TCTGATTGATGACATCTCATCTGGCAAATTGAATGAATATGATAAGAAGGTCACTTTCTA CATCGAGTTGAAGAAAACCATCGGTACGGCCAGTGGTGACTTTCTCGATTTGAAGGCATA TGAACCTGATATGAGAAAGATGATCGATAACTATATCACGGCAGCGGATGCAGAGAAGAT TGGTGATTTTGATGATCTTACCCTATTGGATTTCGTAGCAAAGCAGGGTGAGACACTTAC CGGTGAAGGCGATAGCGGCCACAAGGAAGGTGCAGCAGAGGCAATCGAGAATAACATCCG TAAGAAGGTTATCGAAAAGGTCACAGTCAATCCACGCTATTATGCAAAGATGTCAGAAAT CCTTGATAAGCTCATTGAAGAGCGTAAGCAGGGAGTTCTTGACTACGCTGAGATGCTTGA GAAATATATAAAGCTGGCCAAGGATGTTGATTGCCCAGAGGATAACGACAAATATCCGGA AAGTATCCGCAAGAGTAAAGCCCTGATGGCTATTTATGATAACACTGGAGAAGATGAGAA ACTTGCTATCAGAATCCACAAAGCTGTGAAAAAGCAGGCACTGTTTGGGTTCAGAGATAA TCAGGTAGTAATACGAAGAATAAAGAAAGCACTCTATGAGATTTTGGGTGATGACTCTGA AGTGGAGCGCATCTATAAGATCATTGAAAAGCAGGAGGAGCTTTAATGCGCATTGTCATT TCCGGTATCCCAATTGATGTGCAAAAAAAGAATATAAAAAATATGCACCTTCAGGTGAAG CCGCCGGATGGACATGTTGTAATTTCTGCGCCTTTATCTGTGGACGATAAAGCTATAGAG GCTTATGCCAGAACTCAGCTGGGCTTTATCAAGAGGGCTATCGCGCAGTTTCAGGATCAG CCAAGAGCATCGAAGCGGCAGTATGTTTCAGGTGAGACGATGTATATATGGGGAAAGCAG TACTTTCTTGTCTTTAAGCCTGACAATCAAAAGAACAGCTTCGAGATTCAGAATCAAAAT ATTGTTCTATCCATGAGCGCCAAGAGTACCGTGAAACAGCGAGATGCTTATGTGAAAGAA GAATATCGAAAGATTCTGAAGGAAGAAATAGAAAAGCGTCTGCCTAAGTGGGAGGCGCAG ACAGGACTTAAATGTGATTCTTGGCAAACAAAATATATGGTTACAAAATGGGGTGCCTGC AGTACAGGTAAAAAGAAGCTGTGGTTTAACCTGCAGCTCGCCCAGAAACCGTATGCCTGC CTTGACTATATTATTTTACATGAGCTTACACATTTAATCACAAGAAAGCATGACGCTACA TTTATCGCTCACATGGATAAGCGCATGCCTAATTGGCGTGAAATTCGTAAAGAACTCAAT GACAGCAGGCTGGACTACTATGAAGCACAGGATGAAAGCCCACTGCAGAAACTGATTGAC CAATCTCGTTATGACGATATCCGGGATGCGGCCATAGCTTATATTCAAGAGGAACGTTCT GGTGACACGAAAAGGCTGTCGGTCGTTGATATGGAAATCGAGAATGTTATCCATATTGAA CAGCCAGAAGATGGCGTGATTGCATTCGATGTAATTACATCATGCGATGTCGAGATGTCG TCCGCTTCTCACAAGGGATATTTTAATGAGCGCTGGCTTAAGATTCATTGTCAGGTTACT CTTGGCATTGATATGAGCGGGTTCCGGATCATGTCTGTTGGTAATTGTGAGCCGCAAGAG GAATCTGATAATGACCGCCTGTCCGGAGAGCTGGTACCTATTATCTCACGTGACCAGTTT GAAGACGAAGCTGAGAAGTTCCTGACAAGGTATTGTCCGGCTGCGTTGGATAAACCGATG AGGATTCCAATCGAGACGATAGCCAGCGATATGAAACTACAGGTTATCGAGGATGTACCT CTATCGGATGATCTTACTTATTTTGGGACAATCATATTTGATAACGGGAATGTTCTCGAT AAGCACAGGAAGATTACAATTCGCAATGCTAAACGCGGAACCGTATACCTTGATCCGCGT GTCTCCTATGAGAGATCTGTAGGAACAAAGCGTACTACGCTGGCACATGAGTGTTTTCAC TGGCACCGTCATCAGCCATATCATGTGTTGATGAAAATGATAGGTGCTAACGATAATCTT GGAAGGGCTATTCAGTGCCAAATAGCTGCAAACAACACTGATTCAGATAAATGGAAGGCT GTAGACTGGATGGAGTGGCAAGCCAAAGGCGTTGCTCCGAGAATCTTGATGCCCGCAAAA ATGACGCACTTGAAGGCAAATCAGCTTCTTGCAACTTATGGCGGGGTTGATGATGCGAGC ATTACAGCCTATGAGAATGTCATTGATGAACTGGCGGAGCTGTTCGATGTGTCAAGACAG GCCGCAAAGGTTCGTTTGATGGATCTGGGGTATTCCAAAGCCGAAGGTGCATATCCGTTT GTAGATGGTCAGTATGTTCGTGGATATTCATTTGAAGCAGGTGCCTTGGGTAAGAATCAG ACATTCACTATTCCTTATGCCGATTTGTTTAAGGCTTACTGTTTCGACCGCGAGTTTAAG AAACTAATTGACAGCGGTCAGTTTGTTTTTACGGATCGTCACCTCGTTCTCAACAATGAG AAATATATAGCGAGGAATCAGGCCGGAAATGCGACACTGTCAGAATATGCACTCACACAC ATGGATGAGTGCTGCGTTGTTTTCTCGAAGGGGTATAGCCATCAATCGAAATATCAAGGG GCGAAGTATTACACGCAGTTCATGCGGAACGCCGCTCCTGTTGAAAATCAGATTGAGTAT TCCTTTGAACTAAACACGCATAACCGAACGCTACTCGACCAGATTCAGAACGCCAAGCGT CGGTCAGAAGCCCTGCGAAAATATCCCGGTTCCTTTGCCGAAACGTTGGTAGCCTTACAA AAAGAAAGAAAGCTCTCAAATAAACAGTTAGCAGACCGTTCGCTCGTAGGAGAAAAGACC ATCCAGCGTTTGAGAAATGATGAAGAGTATCCAACATCTGTACAGACAGTTCTGGCGTTA TGCGTAGGATTAAAGCTGCCACTGCCGGAGGCTGAAATGTTTCTTGGTAAAACTGACTTT AAATTAAATTCATTGAAAGGCGAAGGATACGTTTATCAATGTGTAATGGGAGCCTGTGCA GAGAATTCAATTTATGAAATAAATGAAATGCTTAAAGA
Region Details
| Region | 1 |
| Region Length | 17.7Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | integrase,lysis |
| Region Position | 352475-370212 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 2 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Clostr_phiCT453A_NC_028991(2) PHAGE_Crocei_P2559Y_NC_023614(2) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Staphy_YMC/09/04/R1988_NC_022758(1) PHAGE_Lister_vB_LmoS_293_NC_028929(1) PHAGE_Staphy_SMSAP5_NC_019513(1) PHAGE_Lister_A500_NC_009810(1) PHAGE_Bacill_BM5_NC_029069(1) PHAGE_Haemop_Aaphi23_NC_004827(1) PHAGE_Brevib_Jimmer2_NC_041976(1) PHAGE_Brocho_BL3_NC_015254(1) PHAGE_Brevib_Osiris_NC_028969(1) PHAGE_Staphy_phi2958PVL_NC_011344(1) PHAGE_Acinet_Bphi_B1251_NC_019541(1) PHAGE_Entero_phiFL4A_NC_013644(1) PHAGE_Strept_P9_NC_009819(1) PHAGE_Geobac_E2_NC_009552(1) PHAGE_Lactoc_28201_NC_031013(1) PHAGE_Entero_EFC_1_NC_025453(1) PHAGE_Paenib_Tripp_NC_028930(1) PHAGE_Mycoba_Jabbawokkie_NC_022069(1) PHAGE_Strept_315.6_NC_004589(1) PHAGE_Clostr_c_st_NC_007581(1) PHAGE_Lister_LP_030_3_NC_024384(1) PHAGE_Strept_phiNJ2_NC_019418(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 20% |
| GC % | 43.16% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|QUFJ01000001.1| Ruminococcus sp. AF25-28AC AF25-28AC.Scaf1, whole genome shotgun 457104, gc%: 42.32%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 12 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 352475..352486 | attL | 0.0 | Showinfo_outline |
| 2 | 352503..354188 | PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; DWY50_01645; phage(gi725950572) | 2.08e-37 | Showinfo_outline |
| 3 | 354400..356022 | hypothetical protein; DWY50_01650 | 0.0 | Showinfo_outline |
| 4 | complement(356083..357045) | PHAGE_Lactoc_28201_NC_031013: protector from prophage-induced early lysis; DWY50_01655; phage(gi100001) | 3.47e-14 | Showinfo_outline |
| 5 | complement(357038..357592) | PHAGE_Crocei_P2559Y_NC_023614: hypothetical protein; DWY50_01660; phage(gi589893852) | 1.37e-59 | Showinfo_outline |
| 6 | complement(357593..358723) | PHAGE_Crocei_P2559Y_NC_023614: hypothetical protein; DWY50_01665; phage(gi589893851) | 7.52e-99 | Showinfo_outline |
| 7 | complement(358713..359042) | DNA ligase; DWY50_01670 | 0.0 | Showinfo_outline |
| 8 | complement(359361..359867) | sigma-70 family RNA polymerase sigma factor; DWY50_01675 | 0.0 | Showinfo_outline |
| 9 | 360279..360350 | hypothetical protein; DWY50_01680 | 0.0 | Showinfo_outline |
| 10 | 360335..360529 | PHAGE_Haemop_Aaphi23_NC_004827: hypothetical protein; DWY50_01685; phage(gi31543999) | 3.45e-08 | Showinfo_outline |
| 11 | 360577..363255 | PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; DWY50_01690; phage(gi423261981) | 2.91e-19 | Showinfo_outline |
| 12 | 370212..370223 | attR | 0.0 | Showinfo_outline |
Sequence
>352475..352486
AAAACGGAATTA
Sequence
>352503..354188
RuminococcusspAF2528ACMKNKKIKCDIYTRVSTTMQVDGYSLEAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGRPEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSKDSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDEAEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFAASFIKGVLDNPVYCGKLAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIVSETDWELAHQKREKTGVKYEKTHSLNHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYRKQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTEEIEKEIEGLEKQHKQLTGAKARLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIRQQKISEENVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEKEQPDGRFLKHIKFRFPVYFGDREIQELCWDNESIVETVVLMSRKDK
Sequence
>354400..356022
RuminococcusspAF2528ACMDRNYLYQVDIREWIENGLDAEIMVPVFGNRVDKKYDVYLQSFLLPIDAVESDMQNDTYNANTMEPGITVYGSWENDEKVYHRWGNDDDFEPLIIKRNFNGVATDSVEVAEEFRLLFNLYFNSQKNEYVDVSDGEGITVVKMNDNGYITIHKRYLKTYLAVKEKALIVHIDSRCVALDASEKVEEDGLAYRNDENSIFYTLNIGNTSTGTKRENYSYIFAKNVIWACSLCDSNIWPYNEEKNYVDFIIGIDENGKEIRHTCNPSCLSNYFGANPTAPHYLTPVYFDAAVLNKYYSKPEIYKVEDGIIRCGVLWSLYIDNSNSEYVSAYLGDLGRDLPSESEQHYWRGFNKAVGGKLSPTKVKRDFMCIASDSESPDFVFKRTYRRVNQAYEDRLGWPLFLPLTEQDTYNFETLRVPVNNSIAEMDMLVLSLVKILIDSLNEKKITSQLTGSYEKLVGSISKLEAWLIEKDIENYDEHIKFLRNLQELRSSGTGHRKGKGYQKITKALDVKNENYAETFSNLLNSATAFLEFMEENMEKIV
Sequence
>complement(356083..357045)
RuminococcusspAF2528ACMKMVQVNHNHFLGYTKDADGNLIIDPEQAEVVKRIYREYLEGYSMDRIAKGLEADGILTGAGKTKWWTSTINKILRNEKYIGDALLQKTYTTDFLNKTRVKNNGIVPQYYVEGNHEAIIPKDIFLRVQEELVRRRIVKTSTNGKKRTYSCNHCFAQIVICGECGEMFRRIHWNNRGCKSIVWRCISRLEPTGQECHARTVNETILENVVVQAINTLLGDKSTYAQLQQNIAKVIRSAQQNTADEIFKLREQREKCTVDTAARDTQIARINELQDFIKQQHAHLEAFDEALVKRWLERIIIWDDHFTVELKSGLKIEIEA
Sequence
>complement(357038..357592)
RuminococcusspAF2528ACMNKNVKINNPMKVITGPDTRWSYANVWEPKSINGGTPKYSVSLIISKSDTKTIAKIEAAIEAAYKEGEAKLKGNGKSVPALSVIKTPLRDGDMERPDDPAYANAYFVNANAISAPGIVDADRNPILTRSEVYSGVYGRASISFYAFNSSGNKGIACGLNNLQKIRDGEPLGGKASAESDFASDED
Sequence
>complement(357593..358723)
RuminococcusspAF2528ACMPPKGHAILSASSSDRWLHCPPSARLCETYEDKGSDYAAEGTDAHELCEYKLKRALGMDASDPTENLTWYNEEMEDCANGYAAYILEMVEAAKESCADPKVLIEQRVDFFRWVEQGFGTADCIIIADGTLRICDYKHGLGVLVDATDNPQMKCYALGALELFDDIYDIDNVSMTIYQPRRQNISTFEIFKDALYKWADEVLKPTADLAFAGDGNFLCGEWCGFCKAKHECRARAEANLTLAQYDFKLPPFLEDSEIEYILSRADELVAWASDIKEYALQQAISGKEWAGWKLVEGRSNRKYSNEEAVIQAVTDAGFDSYEKKLLGITAMQKRLGKSRFDELLTAYIEKPQGKPTLVPESDKRPAMNNAKTDFMEEN
Sequence
>complement(358713..359042)
RuminococcusspAF2528ACMSKMSDMAMTIEELRSAAAAINEAANWLAEQFGDTADGAPVEKPAAKEEKEPDLKLENVRAVLAEKSRAGHTAAIRTLLQKYGASKLSAVDPKHYEALLKDAEVLDDAT
Sequence
>complement(359361..359867)
RuminococcusspAF2528ACMQNNGNQKTYFIYVRSTGEKVPVTKEQHNSFYKEADRIRHKEQDHGRCMCPYRFIWRCDGDCLDCEYHAAGDITSLDQPLSDGSGTLGDYISDRSKPMEEVISDRMLLEQLFARLRELDPDADTIIQCWLDDYKISDRAIAEKLGRPQRTFADQMKKIRTELRKVRGH
Sequence
>360279..360350
RuminococcusspAF2528ACMIYNKIDELYSDSNYEVRAWKKS
Sequence
>360335..360529
RuminococcusspAF2528ACMEEIMNDKWIGIDEAAEYLGIKTVTLRSWIRNGKEDLPAQKIGKQWKFKISELDEWVKSGKSAD
Sequence
>360577..363255
RuminococcusspAF2528ACMAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTFLFMKYVTDKFKNKGAYEDIKVFDKAHDKDPDPEKRTGCSFDDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDEKKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQFYTPAEVSRILANVVGISHCTDASATVCDPACGSGSLLIRAIDAAPFPIMGYGQEKESTTAGLAKMNAVLHRKAEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVANPPFSMKNWRDGIAGKEYGRFEGYGDMPPEKNGDYAWLMHILKTLKSNGKAAVILPHGVLFRGNAEATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQGIFMIDASRGYVKDGNKNRLRERDIYRIITTFNEQITTDPKYARFVSNDEIEKKNEYNLNITRYIDSTDPEDIQDIYAHIHGGIPAVDIDGLSKYWEVFPSLKSELLSTISEKYYSLNVEHESIRQTIYKNTEFSEYGEKLDEAFVAWKTKEYPVLSTLDEDVSARELIVSLAEDIIAEFEHLTLIDKYDVYQVLLAYWNEVMNDDVSLIISESDGYTNARATDNIEEEITQGKNKGEMKVTGWEGRLIPKSIVIDAFFREEKNAIEEAESIVAETESQLSDLIESADEESALADVVENGKVKAKDIEAKIVELTSTIETEETIELEVIRTDLQLVNTKKRLEAYLVRHPLCKSAVNENGKITKSSIEYRLRIIRTEECVPESLQDDVNQLKAALDLCGKVSDYNKVVKELNKALDEKCRARYEKFTDNEILELLVNKKWFDSIFSGITDLYAEISHRLTSRIIELAERYEDTLPELDKVTAEYEAKVKSHLERMGFKW
Sequence
>370212..370223
AAAACGGAATTA
Ruminococcus sp. AF25-28AC AF25-28AC
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 457104 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 352475
ORF Stop: 352486
Strand: Forward
Protein Sequence: AAAACGGAATTA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: DWY50_01645 (Region 1)
Locus: DWY50_01645ORF Start: 352503
ORF Stop: 354188
Strand: Forward
Protein Sequence: MKNKKIKCDIYTRVSTTMQVDGYSLEAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGRPEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSKDSGKLMISVLSAVAEIERENILVQTMEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDEAEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFAASFIKGVLDNPVYCGKLAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIVSETDWELAHQKREKTGVKYEKTHSLNHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYRKQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTEEIEKEIEGLEKQHKQLTGAKARLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIRQQKISEENVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEKEQPDGRFLKHIKFRFPVYFGDREIQELCWDNESIVETVVLMSRKDK
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: DWY50_01645, site-specific integrase, phage(gi725950572), PHAGE_Entero_EFC_1_NC_025453
Homolog/Ortholog E-Value: 2.08e-37
Locus 3: DWY50_01650 (Region 1)
Locus: DWY50_01650ORF Start: 354400
ORF Stop: 356022
Strand: Forward
Protein Sequence: MDRNYLYQVDIREWIENGLDAEIMVPVFGNRVDKKYDVYLQSFLLPIDAVESDMQNDTYNANTMEPGITVYGSWENDEKVYHRWGNDDDFEPLIIKRNFNGVATDSVEVAEEFRLLFNLYFNSQKNEYVDVSDGEGITVVKMNDNGYITIHKRYLKTYLAVKEKALIVHIDSRCVALDASEKVEEDGLAYRNDENSIFYTLNIGNTSTGTKRENYSYIFAKNVIWACSLCDSNIWPYNEEKNYVDFIIGIDENGKEIRHTCNPSCLSNYFGANPTAPHYLTPVYFDAAVLNKYYSKPEIYKVEDGIIRCGVLWSLYIDNSNSEYVSAYLGDLGRDLPSESEQHYWRGFNKAVGGKLSPTKVKRDFMCIASDSESPDFVFKRTYRRVNQAYEDRLGWPLFLPLTEQDTYNFETLRVPVNNSIAEMDMLVLSLVKILIDSLNEKKITSQLTGSYEKLVGSISKLEAWLIEKDIENYDEHIKFLRNLQELRSSGTGHRKGKGYQKITKALDVKNENYAETFSNLLNSATAFLEFMEENMEKIV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWY50_01650, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: DWY50_01655 (Region 1)
Locus: DWY50_01655ORF Start: 356083
ORF Stop: 357045
Strand: Backward
Protein Sequence: MKMVQVNHNHFLGYTKDADGNLIIDPEQAEVVKRIYREYLEGYSMDRIAKGLEADGILTGAGKTKWWTSTINKILRNEKYIGDALLQKTYTTDFLNKTRVKNNGIVPQYYVEGNHEAIIPKDIFLRVQEELVRRRIVKTSTNGKKRTYSCNHCFAQIVICGECGEMFRRIHWNNRGCKSIVWRCISRLEPTGQECHARTVNETILENVVVQAINTLLGDKSTYAQLQQNIAKVIRSAQQNTADEIFKLREQREKCTVDTAARDTQIARINELQDFIKQQHAHLEAFDEALVKRWLERIIIWDDHFTVELKSGLKIEIEA
Homolog/Ortholog Species: Lysis protein
Homolog/Ortholog Protein: DWY50_01655, protector from prophage-induced early lysis, phage(gi100001), PHAGE_Lactoc_28201_NC_031013
Homolog/Ortholog E-Value: 3.47e-14
Locus 5: DWY50_01660 (Region 1)
Locus: DWY50_01660ORF Start: 357038
ORF Stop: 357592
Strand: Backward
Protein Sequence: MNKNVKINNPMKVITGPDTRWSYANVWEPKSINGGTPKYSVSLIISKSDTKTIAKIEAAIEAAYKEGEAKLKGNGKSVPALSVIKTPLRDGDMERPDDPAYANAYFVNANAISAPGIVDADRNPILTRSEVYSGVYGRASISFYAFNSSGNKGIACGLNNLQKIRDGEPLGGKASAESDFASDED
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWY50_01660, hypothetical protein, phage(gi589893852), PHAGE_Crocei_P2559Y_NC_023614
Homolog/Ortholog E-Value: 1.37e-59
Locus 6: DWY50_01665 (Region 1)
Locus: DWY50_01665ORF Start: 357593
ORF Stop: 358723
Strand: Backward
Protein Sequence: MPPKGHAILSASSSDRWLHCPPSARLCETYEDKGSDYAAEGTDAHELCEYKLKRALGMDASDPTENLTWYNEEMEDCANGYAAYILEMVEAAKESCADPKVLIEQRVDFFRWVEQGFGTADCIIIADGTLRICDYKHGLGVLVDATDNPQMKCYALGALELFDDIYDIDNVSMTIYQPRRQNISTFEIFKDALYKWADEVLKPTADLAFAGDGNFLCGEWCGFCKAKHECRARAEANLTLAQYDFKLPPFLEDSEIEYILSRADELVAWASDIKEYALQQAISGKEWAGWKLVEGRSNRKYSNEEAVIQAVTDAGFDSYEKKLLGITAMQKRLGKSRFDELLTAYIEKPQGKPTLVPESDKRPAMNNAKTDFMEEN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWY50_01665, hypothetical protein, phage(gi589893851), PHAGE_Crocei_P2559Y_NC_023614
Homolog/Ortholog E-Value: 7.52e-99
Locus 7: DWY50_01670 (Region 1)
Locus: DWY50_01670ORF Start: 358713
ORF Stop: 359042
Strand: Backward
Protein Sequence: MSKMSDMAMTIEELRSAAAAINEAANWLAEQFGDTADGAPVEKPAAKEEKEPDLKLENVRAVLAEKSRAGHTAAIRTLLQKYGASKLSAVDPKHYEALLKDAEVLDDAT
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DWY50_01670, DNA ligase
Homolog/Ortholog E-Value: N/A
Locus 8: DWY50_01675 (Region 1)
Locus: DWY50_01675ORF Start: 359361
ORF Stop: 359867
Strand: Backward
Protein Sequence: MQNNGNQKTYFIYVRSTGEKVPVTKEQHNSFYKEADRIRHKEQDHGRCMCPYRFIWRCDGDCLDCEYHAAGDITSLDQPLSDGSGTLGDYISDRSKPMEEVISDRMLLEQLFARLRELDPDADTIIQCWLDDYKISDRAIAEKLGRPQRTFADQMKKIRTELRKVRGH
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DWY50_01675, sigma-70 family RNA polymerase sigma factor
Homolog/Ortholog E-Value: N/A
Locus 9: DWY50_01680 (Region 1)
Locus: DWY50_01680ORF Start: 360279
ORF Stop: 360350
Strand: Forward
Protein Sequence: MIYNKIDELYSDSNYEVRAWKKS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWY50_01680, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 10: DWY50_01685 (Region 1)
Locus: DWY50_01685ORF Start: 360335
ORF Stop: 360529
Strand: Forward
Protein Sequence: MEEIMNDKWIGIDEAAEYLGIKTVTLRSWIRNGKEDLPAQKIGKQWKFKISELDEWVKSGKSAD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWY50_01685, hypothetical protein, phage(gi31543999), PHAGE_Haemop_Aaphi23_NC_004827
Homolog/Ortholog E-Value: 3.45e-08
Locus 11: DWY50_01690 (Region 1)
Locus: DWY50_01690ORF Start: 360577
ORF Stop: 363255
Strand: Forward
Protein Sequence: MAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTFLFMKYVTDKFKNKGAYEDIKVFDKAHDKDPDPEKRTGCSFDDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDEKKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQFYTPAEVSRILANVVGISHCTDASATVCDPACGSGSLLIRAIDAAPFPIMGYGQEKESTTAGLAKMNAVLHRKAEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVANPPFSMKNWRDGIAGKEYGRFEGYGDMPPEKNGDYAWLMHILKTLKSNGKAAVILPHGVLFRGNAEATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQGIFMIDASRGYVKDGNKNRLRERDIYRIITTFNEQITTDPKYARFVSNDEIEKKNEYNLNITRYIDSTDPEDIQDIYAHIHGGIPAVDIDGLSKYWEVFPSLKSELLSTISEKYYSLNVEHESIRQTIYKNTEFSEYGEKLDEAFVAWKTKEYPVLSTLDEDVSARELIVSLAEDIIAEFEHLTLIDKYDVYQVLLAYWNEVMNDDVSLIISESDGYTNARATDNIEEEITQGKNKGEMKVTGWEGRLIPKSIVIDAFFREEKNAIEEAESIVAETESQLSDLIESADEESALADVVENGKVKAKDIEAKIVELTSTIETEETIELEVIRTDLQLVNTKKRLEAYLVRHPLCKSAVNENGKITKSSIEYRLRIIRTEECVPESLQDDVNQLKAALDLCGKVSDYNKVVKELNKALDEKCRARYEKFTDNEILELLVNKKWFDSIFSGITDLYAEISHRLTSRIIELAERYEDTLPELDKVTAEYEAKVKSHLERMGFKW
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWY50_01690, putative restriction-modification protein, phage(gi423261981), PHAGE_Acinet_Bphi_B1251_NC_019541
Homolog/Ortholog E-Value: 2.91e-19
Locus 12: attR (Region 1)
Locus: attRORF Start: 370212
ORF Stop: 370223
Strand: Forward
Protein Sequence: AAAACGGAATTA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download