Submission Results

Sequence Name: Not Available

GenBank Accession Number: RKPJ01000001.1

GenInfo (GI) Number: 0000000000

Download Results: RKPJ01000001.1.PHASTER.zip

gi|00000000|ref|RKPJ01000001.1| Enterococcus faecalis strain P3 CL A14 2831_1, whole genome 864151, gc%: 37.10%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
114.6Kbincomplete4018603564-618195 info_outlinePHAGE_Entero_vB_IME197_NC_028671(7)38.75%Show info_outline
239.7Kbintact12048801064-840807 info_outlinePHAGE_Lister_B025_NC_009812(8)34.47%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|RKPJ01000001.1| Enterococcus faecalis strain P3 CL A14 2831_1, whole genome 864151, gc%: 37.10%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(603564..604661)PHAGE_Entero_Ec_ZZ2_NC_031260: hypothetical protein; EGW96_03010; phage(gi100020)7.80e-91Showinfo_outline
2complement(604807..605202)PHAGE_Entero_EF62phi_NC_017732: holin; EGW96_03015; phage(gi384519787)3.69e-46Showinfo_outline
3complement(605226..606995)PHAGE_Entero_vB_IME197_NC_028671: glycerophosphoryl diester phosphodiesterase; EGW96_03020; phage(gi966199029)0.0Showinfo_outline
4complement(607028..608485)PHAGE_Entero_vB_IME197_NC_028671: putative structural protein; EGW96_03025; phage(gi966199027)0.0Showinfo_outline
5complement(608498..609424)PHAGE_Entero_vB_IME197_NC_028671: capsid and scaffold protein; EGW96_03030; phage(gi966199025)1.09e-99Showinfo_outline
6complement(609426..612359)PHAGE_Strept_Dp_1_NC_015274: TMP; EGW96_03035; phage(gi327198366)6.03e-110Showinfo_outline
7complement(612349..612717)PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; EGW96_03040; phage(gi100016)6.65e-13Showinfo_outline
8complement(612735..613094)PHAGE_Strept_858_NC_010353: orf17; EGW96_03045; phage(gi168229290)7.93e-16Showinfo_outline
9complement(613127..613639)PHAGE_Strept_TP_J34_NC_020197: putative major tail protein; EGW96_03050; phage(gi444475914)1.04e-46Showinfo_outline
10complement(613652..614044)PHAGE_Entero_vB_IME197_NC_028671: capsid and scaffold protein; EGW96_03055; phage(gi966199019)2.26e-09Showinfo_outline
11complement(614290..614697)PHAGE_Lactob_Lb_NC_047983: hypothetical protein; EGW96_03060; phage(gi100025)3.56e-28Showinfo_outline
12complement(614717..615088)hypothetical protein; EGW96_030650.0Showinfo_outline
13complement(615081..615173)hypothetical protein; EGW96_030700.0Showinfo_outline
14complement(615176..616018)PHAGE_Lactob_iA2_NC_028830: DNA replication protein; EGW96_03075; phage(gi971747669)3.10e-41Showinfo_outline
15complement(616037..616807)PHAGE_Entero_vB_IME197_NC_028671: replication initiation protein; EGW96_03080; phage(gi966198985)3.25e-42Showinfo_outline
16complement(616838..617020)hypothetical protein; EGW96_030850.0Showinfo_outline
17617193..617675PHAGE_Staphy_P1105_NC_048636: holin; EGW96_03090; phage(gi100034)2.62e-28Showinfo_outline
18617722..618195PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGW96_03095; phage(gi966198972)2.24e-79Showinfo_outline

Region 2, total 51 CDS

#CDS PositionBLAST HitE-ValueSequence
1801064..801077attL0.0Showinfo_outline
2complement(804017..805276)PHAGE_Entero_phiFL3A_NC_013648: endolysin; EGW96_04020; phage(gi281416276)0.0Showinfo_outline
3complement(805330..805728)PHAGE_Entero_EF62phi_NC_017732: holin; EGW96_04025; phage(gi384519787)4.59e-50Showinfo_outline
4complement(805740..806456)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_04030; phage(gi281416380)4.67e-44Showinfo_outline
5complement(806468..807523)PHAGE_Lactoc_50101_NC_031040: HNH endonuclease; EGW96_04035; phage(gi100046)7.00e-39Showinfo_outline
6complement(807534..808658)PHAGE_Lactoc_50101_NC_031040: putative transcriptional regulator; EGW96_04040; phage(gi100045)5.83e-110Showinfo_outline
7complement(808661..809560)PHAGE_Lactoc_63301_NC_031017: hypothetical protein; EGW96_04045; phage(gi100042)2.05e-35Showinfo_outline
8complement(809560..814311)PHAGE_Strept_315.1_NC_004584: tail tapemeasure protein; EGW96_04050; phage(gi28876187)0.0Showinfo_outline
9complement(814533..814880)PHAGE_Entero_IME_EFm5_NC_028826: putative tail tape measure chaperone protein; EGW96_04055; phage(gi971746938)6.73e-06Showinfo_outline
10complement(814937..815410)PHAGE_Entero_phiEf11_NC_013696: putative phage major tail protein; EGW96_04060; phage(gi282598736)1.25e-21Showinfo_outline
11complement(815484..816077)PHAGE_Lister_LP_HM00113468_NC_049900: putative single-stranded DNA binding protein; EGW96_04065; phage(gi100050)1.22e-23Showinfo_outline
12complement(816110..816505)PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; EGW96_04070; phage(gi100051)4.79e-24Showinfo_outline
13complement(816502..816906)PHAGE_Lister_LP_HM00113468_NC_049900: tail fiber protein; EGW96_04075; phage(gi100052)2.64e-21Showinfo_outline
14complement(816903..817289)PHAGE_Lister_LP_HM00113468_NC_049900: tail assembly protein; EGW96_04080; phage(gi100053)1.30e-34Showinfo_outline
15complement(817264..817545)PHAGE_Lister_LP_HM00113468_NC_049900: tail tip protein; EGW96_04085; phage(gi100054)8.58e-13Showinfo_outline
16complement(817622..818809)PHAGE_Staphy_vB_SpsS_QT1_NC_048192: hypothetical protein; EGW96_04090; phage(gi100005)3.61e-73Showinfo_outline
17complement(818806..819525)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; EGW96_04095; phage(gi100008)8.27e-42Showinfo_outline
18complement(819512..820675)PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; EGW96_04100; phage(gi100002)3.10e-89Showinfo_outline
19820979..821257PHAGE_Staphy_P1105_NC_048636: recombination protein; EGW96_04105; phage(gi100049)2.96e-31Showinfo_outline
20complement(821303..822985)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; EGW96_04110; phage(gi100006)0.0Showinfo_outline
21complement(822982..823290)PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; EGW96_04115; phage(gi100004)4.62e-18Showinfo_outline
22complement(823329..823616)hypothetical protein; EGW96_041200.0Showinfo_outline
23complement(823607..823918)PHAGE_Strept_phi3396_NC_009018: putative endonuclease; EGW96_04125; phage(gi126011092)2.73e-29Showinfo_outline
24complement(823920..824495)PHAGE_Lactob_LJ_NC_048680: endolysin; EGW96_04130; phage(gi100033)1.08e-05Showinfo_outline
25complement(824502..824816)hypothetical protein; EGW96_041350.0Showinfo_outline
26complement(824954..825025)tRNA0.0Showinfo_outline
27complement(825326..825793)PHAGE_Brocho_NF5_NC_015252: gp53; EGW96_04145; phage(gi327197638)8.73e-12Showinfo_outline
28825948..826226hypothetical protein; EGW96_041500.0Showinfo_outline
29complement(826398..826604)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGW96_04155; phage(gi966198990)3.90e-33Showinfo_outline
30complement(826620..827225)PHAGE_Lister_B054_NC_009813: gp58; EGW96_04160; phage(gi157325342)6.34e-14Showinfo_outline
31827274..827654hypothetical protein; EGW96_041650.0Showinfo_outline
32complement(827655..828125)PHAGE_Lactob_Satyr_NC_047918: recombination protein; EGW96_04170; phage(gi100049)2.20e-28Showinfo_outline
33complement(828274..828543)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGW96_04175; phage(gi966198986)6.06e-10Showinfo_outline
34complement(828682..829521)PHAGE_Lactob_iA2_NC_028830: DNA replication protein; EGW96_04180; phage(gi971747669)1.56e-39Showinfo_outline
35complement(829533..830288)PHAGE_Lactob_BH1_NC_048737: hypothetical protein; EGW96_04185; phage(gi100039)3.25e-46Showinfo_outline
36complement(830303..831106)PHAGE_Strept_9873_NC_047763: hypothetical protein; EGW96_04190; phage(gi100035)2.12e-72Showinfo_outline
37complement(831081..832097)PHAGE_Staphy_SA7_NC_048658: hypothetical protein; EGW96_04195; phage(gi100011)1.99e-48Showinfo_outline
38complement(832090..832197)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_04200; phage(gi281416338)1.39e-11Showinfo_outline
39complement(832200..832424)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_04205; phage(gi281416337)7.96e-33Showinfo_outline
40complement(832484..832684)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_04210; phage(gi281416334)5.33e-16Showinfo_outline
41832743..833291hypothetical protein; EGW96_042150.0Showinfo_outline
42complement(833548..833877)PHAGE_Lactoc_50101_NC_031040: hypothetical protein; EGW96_04220; phage(gi100007)6.04e-07Showinfo_outline
43complement(833890..834081)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; EGW96_04225; phage(gi100038)4.15e-07Showinfo_outline
44834370..834711PHAGE_Strept_phiARI0468_4_NC_031915: HNH endonuclease; EGW96_04230; phage(gi100046)3.64e-29Showinfo_outline
45834712..835134PHAGE_Lactoc_98201_NC_031064: hypothetical protein; EGW96_04235; phage(gi100003)1.86e-05Showinfo_outline
46835222..835806hypothetical protein; EGW96_042400.0Showinfo_outline
47835917..836828PHAGE_Staphy_phinm2_NC_028913: hypothetical protein; EGW96_04245; phage(gi971755112)3.01e-15Showinfo_outline
48836921..838051PHAGE_Lactoc_bIL309_NC_002668: integrase; EGW96_04250; phage(gi13095806)4.60e-91Showinfo_outline
49838126..838139attR0.0Showinfo_outline
50838574..840346DUF262 domain-containing protein; EGW96_042550.0Showinfo_outline
51840613..840807PHAGE_Staphy_vB_SauS_phi2_NC_028862: DNA-binding protein; EGW96_04260; phage(gi971750158)6.63e-07Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 864151 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download