Submission Results

Sequence Name: Not Available

GenBank Accession Number: RKPJ01000005.1

GenInfo (GI) Number: 0000000000

Download Results: RKPJ01000005.1.PHASTER.zip

gi|00000000|ref|RKPJ01000005.1| Enterococcus faecalis strain P3 CL A14 2831_5, whole genome 207874, gc%: 36.98%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.6Kbintact15054173222-207874 info_outlinePHAGE_Entero_phiFL3A_NC_013648(16)35.39%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|RKPJ01000005.1| Enterococcus faecalis strain P3 CL A14 2831_5, whole genome 207874, gc%: 36.98%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 57 CDS

#CDS PositionBLAST HitE-ValueSequence
1173222..173566PHAGE_Entero_phiFL3A_NC_013648: ribosomal protein; EGW96_11780; phage(gi281416258)3.87e-06Showinfo_outline
2173579..17386650S ribosomal protein L27; EGW96_117850.0Showinfo_outline
3173737..173748attL0.0Showinfo_outline
4complement(173954..175108)PROPHAGE_Oceano_HTE831: integrase; EGW96_11790; phage(gi23097608)2.16e-89Showinfo_outline
5complement(175174..175641)hypothetical protein; EGW96_117950.0Showinfo_outline
6complement(175683..176138)PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; EGW96_11800; phage(gi100052)2.10e-17Showinfo_outline
7complement(176174..176599)PHAGE_Bacill_BCJA1c_NC_006557: repressor; EGW96_11805; phage(gi56694874)2.85e-38Showinfo_outline
8176834..177034PHAGE_Lactoc_bIL312_NC_002671: repressor; EGW96_11810; phage(gi13095896)4.44e-11Showinfo_outline
9177047..177331hypothetical protein; EGW96_118150.0Showinfo_outline
10177346..178068PHAGE_Entero_phiFL3A_NC_013648: anti-repressor protein; EGW96_11820; phage(gi281416221)9.59e-58Showinfo_outline
11complement(178102..178284)DUF1508 domain-containing protein; EGW96_118250.0Showinfo_outline
12178750..179073PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11830; phage(gi281416230)3.96e-66Showinfo_outline
13179073..179300PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_11835; phage(gi281416337)3.12e-48Showinfo_outline
14179300..179401PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_11840; phage(gi281416338)4.75e-14Showinfo_outline
15179398..180339PHAGE_Entero_phiFL3A_NC_013648: endonuclease YqaJ superfamily; EGW96_11845; phage(gi281416231)0.0Showinfo_outline
16180342..181232PHAGE_Entero_phiFL3A_NC_013648: RecT family protein; EGW96_11850; phage(gi281416232)0.0Showinfo_outline
17181246..182205PHAGE_Entero_phiFL3A_NC_013648: recombinase; EGW96_11855; phage(gi281416233)0.0Showinfo_outline
18182209..182508PHAGE_Entero_phiFL3A_NC_013648: ArpR DNA binding protein; EGW96_11860; phage(gi281416235)1.30e-56Showinfo_outline
19182526..182951PHAGE_Entero_phiFL3A_NC_013648: resolvase; EGW96_11865; phage(gi281416236)9.39e-84Showinfo_outline
20182948..183709PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11870; phage(gi281416237)9.57e-134Showinfo_outline
21184004..184114SAM-dependent DNA methyltransferase; EGW96_118750.0Showinfo_outline
22184136..184321hypothetical protein; EGW96_118800.0Showinfo_outline
23184281..184487hypothetical protein; EGW96_118850.0Showinfo_outline
24184491..184685hypothetical protein; EGW96_118900.0Showinfo_outline
25184698..184922hypothetical protein; EGW96_118950.0Showinfo_outline
26184975..185433PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGW96_11900; phage(gi966198995)1.52e-51Showinfo_outline
27185445..185954PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11905; phage(gi281416245)3.95e-54Showinfo_outline
28185955..186140PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; EGW96_11910; phage(gi282598723)7.03e-26Showinfo_outline
29186137..186337PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11915; phage(gi281416246)1.44e-14Showinfo_outline
30complement(186334..186525)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGW96_11920; phage(gi281416356)3.87e-39Showinfo_outline
31186727..187143PHAGE_Entero_phiFL3A_NC_013648: transcriptional regulator; EGW96_11925; phage(gi281416247)1.36e-83Showinfo_outline
32187528..187599tRNA0.0Showinfo_outline
33188032..188199hypothetical protein; EGW96_119350.0Showinfo_outline
34188203..189537PHAGE_Entero_phiFL3A_NC_013648: DNA adenine methyltransferase; EGW96_11940; phage(gi281416249)0.0Showinfo_outline
35189575..189766PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11945; phage(gi281416250)6.31e-35Showinfo_outline
36189903..190091PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGW96_11950; phage(gi281416251)1.57e-34Showinfo_outline
37190111..190851PHAGE_Lactob_phig1e_NC_004305: hypothetical protein; EGW96_11955; phage(gi254854753)2.33e-05Showinfo_outline
38190898..191755PHAGE_Entero_phiFL3A_NC_013648: terminase small subunit; EGW96_11960; phage(gi281416254)3.64e-36Showinfo_outline
39191733..193025PHAGE_Oenoco_phiS11_NC_023571: Phage terminase large subunit; EGW96_11965; phage(gi589286629)0.0Showinfo_outline
40193025..194509PHAGE_Lactoc_ul36_NC_004066: putative portal protein; EGW96_11970; phage(gi21716109)2.20e-103Showinfo_outline
41194502..195428PHAGE_Lactoc_TP901_1_NC_002747: ORF33; EGW96_11975; phage(gi13786564)2.14e-77Showinfo_outline
42195533..196186PHAGE_Entero_vB_IME197_NC_028671: capsid and scaffold protein; EGW96_11980; phage(gi966199012)3.40e-17Showinfo_outline
43196200..197096PHAGE_Lactob_phiJB_NC_022775: major capsid protein; EGW96_11985; phage(gi571797882)3.92e-95Showinfo_outline
44197167..197499PHAGE_Staphy_StB12_NC_020490: DNA packaging minor head protein; EGW96_11990; phage(gi939535530)5.99e-13Showinfo_outline
45197496..197771hypothetical protein; EGW96_119950.0Showinfo_outline
46197768..198106PHAGE_Lactob_Lj928_NC_005354: putative major tail protein; EGW96_12000; phage(gi41179323)2.21e-15Showinfo_outline
47198103..198495PHAGE_Anoxyb_A403_NC_048701: hypothetical protein; EGW96_12005; phage(gi100009)6.61e-23Showinfo_outline
48198514..199119PHAGE_Entero_phiEf11_NC_013696: phage major tail protein; EGW96_12010; phage(gi282598708)2.94e-21Showinfo_outline
49199122..199430PHAGE_Entero_phiEf11_NC_013696: putative phage major tail protein; EGW96_12015; phage(gi282598736)1.37e-15Showinfo_outline
50199493..199891PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; EGW96_12020; phage(gi282598743)2.86e-08Showinfo_outline
51199960..200265hypothetical protein; EGW96_120250.0Showinfo_outline
52200252..204706PHAGE_Strept_phi3396_NC_009018: putative phage-related tail tape measure protein; EGW96_12030; phage(gi126011107)4.04e-94Showinfo_outline
53201330..201341attR0.0Showinfo_outline
54204703..205425PHAGE_Strept_5093_NC_012753: hypothetical protein; EGW96_12035; phage(gi238801908)3.59e-50Showinfo_outline
55205425..206870PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; EGW96_12040; phage(gi431810378)1.91e-21Showinfo_outline
56206876..207616hypothetical protein; EGW96_120450.0Showinfo_outline
57207634..207874PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; EGW96_12050; phage(gi100063)3.47e-05Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 207874 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download