Submission Results

Sequence Name: Not Available

GenBank Accession Number: RKPW01000002.1

GenInfo (GI) Number: 0000000000

Download Results: RKPW01000002.1.PHASTER.zip

gi|00000000|ref|RKPW01000002.1| Enterococcus faecalis strain P9 CL A7 2810_2, whole genome shotgun 512267, gc%: 36.46%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.8Kbquestionable9064387930-424816 info_outlinePHAGE_Lactoc_bIL285_NC_002666(13)33.92%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|RKPW01000002.1| Enterococcus faecalis strain P9 CL A7 2810_2, whole genome shotgun 512267, gc%: 36.46%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 67 CDS

#CDS PositionBLAST HitE-ValueSequence
1387930..388274PHAGE_Lactoc_PLgT_1_NC_031016: hypothetical protein; EGX33_04545; phage(gi100027)4.15e-05Showinfo_outline
2388287..38857450S ribosomal protein L27; EGX33_045500.0Showinfo_outline
3388637..388651attL0.0Showinfo_outline
4complement(388663..389817)PROPHAGE_Oceano_HTE831: integrase; EGX33_04555; phage(gi23097608)2.30e-89Showinfo_outline
5complement(389886..390455)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; EGX33_04560; phage(gi985757858)7.52e-05Showinfo_outline
6complement(390636..391067)PHAGE_Bacill_phi105_NC_048631: hypothetical protein; EGX33_04565; phage(gi100030)1.02e-10Showinfo_outline
7complement(391082..391495)PHAGE_Bacill_phi4B1_NC_028886: DNA-binding helix-turn-helix protein; EGX33_04570; phage(gi971821252)3.55e-36Showinfo_outline
8391752..391961PHAGE_Lactoc_bIL312_NC_002671: repressor; EGX33_04575; phage(gi13095896)2.68e-14Showinfo_outline
9391965..392249hypothetical protein; EGX33_045800.0Showinfo_outline
10392264..392977PHAGE_Entero_phiFL1A_NC_013646: anti-repressor protein; EGX33_04585; phage(gi281416331)2.21e-122Showinfo_outline
11392988..393173PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_04590; phage(gi281416332)5.92e-35Showinfo_outline
12393185..393388hypothetical protein; EGX33_045950.0Showinfo_outline
13complement(393375..393857)PHAGE_Strept_phiARI0923_NC_030946: hypothetical protein; EGX33_04600; phage(gi100029)1.89e-14Showinfo_outline
14393951..394151PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGX33_04605; phage(gi281416225)8.24e-37Showinfo_outline
15394220..394627PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; EGX33_04610; phage(gi100026)6.67e-26Showinfo_outline
16394640..395383PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; EGX33_04615; phage(gi100025)3.23e-53Showinfo_outline
17395456..395779PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_04620; phage(gi281416336)2.14e-61Showinfo_outline
18395779..395892PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; EGX33_04625; phage(gi282598721)1.74e-10Showinfo_outline
19395959..396213PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_04630; phage(gi966198981)3.21e-33Showinfo_outline
20396197..396874PHAGE_Entero_vB_IME197_NC_028671: putative recombination protein; EGX33_04635; phage(gi966198982)4.95e-155Showinfo_outline
21396859..397797PHAGE_Lactob_LJ_NC_048680: hypothetical protein; EGX33_04640; phage(gi100003)1.12e-33Showinfo_outline
22397794..398474PHAGE_Lactob_Lb_NC_047983: putative phosphoesterase; EGX33_04645; phage(gi100037)3.90e-41Showinfo_outline
23398478..399272PHAGE_Lactob_LJ_NC_048680: hypothetical protein; EGX33_04650; phage(gi100007)5.16e-21Showinfo_outline
24399277..399804PHAGE_Strept_phiARI0468_4_NC_031915: hypothetical protein; EGX33_04655; phage(gi100036)3.14e-57Showinfo_outline
25399816..400145PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGX33_04660; phage(gi281416237)6.86e-07Showinfo_outline
26400165..400371PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_04665; phage(gi966198990)1.82e-30Showinfo_outline
27400569..400847PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_04670; phage(gi966198995)2.90e-49Showinfo_outline
28400859..401182PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; EGX33_04675; phage(gi971482530)4.09e-05Showinfo_outline
29401173..401391hypothetical protein; EGX33_046800.0Showinfo_outline
30401388..401585PHAGE_Entero_EFDG1_NC_029009: hypothetical protein; EGX33_04685; phage(gi971765166)4.25e-17Showinfo_outline
31401604..402122PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_04690; phage(gi281416352)6.42e-50Showinfo_outline
32402123..402308PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; EGX33_04695; phage(gi282598723)7.03e-26Showinfo_outline
33402305..402505PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; EGX33_04700; phage(gi281416521)8.06e-40Showinfo_outline
34complement(402502..402693)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_04705; phage(gi281416356)3.87e-39Showinfo_outline
35402895..403311PHAGE_Entero_phiFL2A_NC_013643: transcriptional regulator protein ArpU superfamily; EGX33_04710; phage(gi281416523)4.33e-95Showinfo_outline
36403317..403636hypothetical protein; EGX33_047150.0Showinfo_outline
37404400..404564hypothetical protein; EGX33_047200.0Showinfo_outline
38404594..404878hypothetical protein; EGX33_047250.0Showinfo_outline
39405093..405419PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04730; phage(gi100019)1.86e-38Showinfo_outline
40405610..405969PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04735; phage(gi100018)8.85e-19Showinfo_outline
41405974..407761PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04740; phage(gi100017)0.0Showinfo_outline
42407781..408992PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04745; phage(gi100016)2.09e-131Showinfo_outline
43409016..409567PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04750; phage(gi100015)1.47e-44Showinfo_outline
44409570..410838PHAGE_Geobac_GBSV1_NC_008376: phage major capsid protein; EGX33_04755; phage(gi115334630)1.88e-135Showinfo_outline
45410841..410984hypothetical protein; EGX33_047600.0Showinfo_outline
46411011..411286PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04765; phage(gi100012)9.52e-16Showinfo_outline
47411279..411599PHAGE_Lactoc_bIL285_NC_002666: Orf47; EGX33_04770; phage(gi13095727)2.10e-26Showinfo_outline
48411592..411972PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04775; phage(gi100011)2.05e-30Showinfo_outline
49411975..412292PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04780; phage(gi100010)5.30e-13Showinfo_outline
50412309..412908PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04785; phage(gi100009)2.01e-53Showinfo_outline
51412911..413273PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; EGX33_04790; phage(gi100008)1.23e-13Showinfo_outline
52413282..413485PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; EGX33_04795; phage(gi115334638)3.37e-11Showinfo_outline
53413501..416023PHAGE_Lactoc_bIL285_NC_002666: tail protein; EGX33_04800; phage(gi13095732)4.77e-87Showinfo_outline
54416028..416777PHAGE_Clostr_phiCT19406C_NC_029006: tail protein; EGX33_04805; phage(gi971821558)4.65e-13Showinfo_outline
55416774..419572PHAGE_Strept_9872_NC_031094: hypothetical protein; EGX33_04810; phage(gi100017)7.94e-67Showinfo_outline
56419591..420472PHAGE_Lactoc_bIL285_NC_002666: Orf55; EGX33_04815; phage(gi13095735)5.87e-15Showinfo_outline
57420465..421061PHAGE_Ralsto_RSL1_NC_010811: hypothetical protein; EGX33_04820; phage(gi189426961)2.56e-09Showinfo_outline
58421058..421345PHAGE_Weisse_phiYS61_NC_018270: putative tail fiber protein; EGX33_04825; phage(gi399528395)7.26e-07Showinfo_outline
59421345..421836PHAGE_Lactoc_CHPC52_NC_049483: hypothetical protein; EGX33_04830; phage(gi100020)5.91e-09Showinfo_outline
60421850..422245PHAGE_Entero_AUEF3_NC_042134: hypothetical protein; EGX33_04835; phage(gi100006)5.05e-05Showinfo_outline
61422247..422384XkdX family protein; EGX33_048400.0Showinfo_outline
62422414..422818PHAGE_Entero_vB_EfaP_Ef7.4_NC_049940: hypothetical protein; EGX33_04845; phage(gi100017)1.71e-19Showinfo_outline
63422802..423635PHAGE_Entero_EFC_1_NC_025453: lysin; EGX33_04850; phage(gi725950568)4.85e-167Showinfo_outline
64424066..424139tRNA0.0Showinfo_outline
65424268..424465hypothetical protein; EGX33_048600.0Showinfo_outline
66complement(424486..424737)PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; EGX33_04865; phage(gi725950571)2.07e-30Showinfo_outline
67424816..424830attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 512267 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download