Submission Results

Sequence Name: Not Available

GenBank Accession Number: RKPW01000004.1

GenInfo (GI) Number: 0000000000

Download Results: RKPW01000004.1.PHASTER.zip

gi|00000000|ref|RKPW01000004.1| Enterococcus faecalis strain P9 CL A7 2810_4, whole genome shotgun 435522, gc%: 36.97%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.6Kbintact12060279213-318890 info_outlinePHAGE_Entero_phiFL1A_NC_013646(28)34.00%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|RKPW01000004.1| Enterococcus faecalis strain P9 CL A7 2810_4, whole genome shotgun 435522, gc%: 36.97%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 63 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(279213..279719)PHAGE_Strept_Dp_1_NC_015274: QueT; EGX33_08930; phage(gi327198320)5.87e-10Showinfo_outline
2280131..281189PHAGE_Staphy_vB_SauS_phi2_NC_028862: hypothetical protein; EGX33_08935; phage(gi971750161)1.77e-06Showinfo_outline
3280414..280428attL0.0Showinfo_outline
4complement(281156..281362)hypothetical protein; EGX33_089400.0Showinfo_outline
5complement(281463..281536)tRNA0.0Showinfo_outline
6complement(281557..282090)PHAGE_Lister_A500_NC_009810: gp26; EGX33_08950; phage(gi157324986)1.74e-12Showinfo_outline
7complement(283144..283887)PHAGE_Entero_IMEEF1_NC_041959: hypothetical protein; EGX33_08955; phage(gi100087)1.28e-64Showinfo_outline
8complement(283901..284161)PHAGE_Lactoc_Tuc2009_NC_002703: holin; EGX33_08960; phage(gi13487855)2.36e-22Showinfo_outline
9complement(284154..284384)PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; EGX33_08965; phage(gi281416274)1.75e-27Showinfo_outline
10complement(284425..284694)PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; EGX33_08970; phage(gi100019)6.85e-12Showinfo_outline
11complement(284697..285050)hypothetical protein; EGX33_089750.0Showinfo_outline
12complement(285029..287953)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_08980; phage(gi281416379)4.65e-119Showinfo_outline
13complement(287976..288815)PHAGE_Entero_phiFL1A_NC_013646: tail protein; EGX33_08985; phage(gi281416378)5.85e-69Showinfo_outline
14complement(288828..292589)PHAGE_Entero_phiFL1A_NC_013646: PblA-like tail protein; EGX33_08990; phage(gi281416377)0.0Showinfo_outline
15complement(292586..292855)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_08995; phage(gi281416376)2.88e-26Showinfo_outline
16complement(292897..293370)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09000; phage(gi281416375)5.10e-36Showinfo_outline
17complement(293442..293624)PHAGE_Entero_phiEf11_NC_013696: putative phage major tail protein; EGX33_09005; phage(gi282598736)3.97e-19Showinfo_outline
18complement(293645..294286)PHAGE_Entero_phiFL1A_NC_013646: major tail protein; EGX33_09010; phage(gi281416373)7.44e-90Showinfo_outline
19complement(294301..294639)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09015; phage(gi281416372)3.50e-42Showinfo_outline
20complement(294656..295000)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09020; phage(gi281416371)1.72e-35Showinfo_outline
21complement(294997..295278)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09025; phage(gi281416370)1.94e-17Showinfo_outline
22complement(295275..295646)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09030; phage(gi281416369)1.02e-54Showinfo_outline
23complement(295717..296652)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09035; phage(gi281416368)0.0Showinfo_outline
24complement(296670..297284)PHAGE_Entero_phiFL1A_NC_013646: scaffold protein; EGX33_09040; phage(gi281416367)3.64e-65Showinfo_outline
25complement(297412..298350)PHAGE_Entero_phiFL1A_NC_013646: phage head protein; EGX33_09045; phage(gi281416365)2.73e-149Showinfo_outline
26complement(298316..299851)PHAGE_Entero_phiFL1A_NC_013646: portal protein; EGX33_09050; phage(gi281416363)0.0Showinfo_outline
27complement(299864..301285)PHAGE_Lactoc_TP901_1_NC_002747: TerL; EGX33_09055; phage(gi13786562)0.0Showinfo_outline
28complement(301275..301736)PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; EGX33_09060; phage(gi281416524)5.30e-85Showinfo_outline
29complement(301767..301997)hypothetical protein; EGX33_090650.0Showinfo_outline
30complement(303411..303645)hypothetical protein; EGX33_090700.0Showinfo_outline
31complement(303707..304123)PHAGE_Entero_phiFL1A_NC_013646: transcriptional regulator ArpU family; EGX33_09075; phage(gi281416357)8.36e-70Showinfo_outline
32complement(304865..305368)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09080; phage(gi281416352)1.64e-80Showinfo_outline
33complement(305368..305823)PHAGE_Entero_EF62phi_NC_017732: hypothetical protein; EGX33_09085; phage(gi384519770)7.55e-74Showinfo_outline
34complement(305836..306114)PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_09090; phage(gi966198995)2.47e-53Showinfo_outline
35complement(306115..306354)hypothetical protein; EGX33_090950.0Showinfo_outline
36complement(306407..306631)hypothetical protein; EGX33_091000.0Showinfo_outline
37complement(306644..306838)hypothetical protein; EGX33_091050.0Showinfo_outline
38complement(306842..307048)hypothetical protein; EGX33_091100.0Showinfo_outline
39complement(307008..307193)hypothetical protein; EGX33_091150.0Showinfo_outline
40complement(307215..307325)SAM-dependent DNA methyltransferase; EGX33_091200.0Showinfo_outline
41complement(307622..308383)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09125; phage(gi281416344)5.12e-180Showinfo_outline
42complement(308380..308805)PHAGE_Entero_phiFL1A_NC_013646: resolvase; EGX33_09130; phage(gi281416343)2.74e-87Showinfo_outline
43complement(308823..309122)PHAGE_Entero_phiFL1A_NC_013646: DNA binding protein; EGX33_09135; phage(gi281416342)7.00e-59Showinfo_outline
44complement(309122..310084)PHAGE_Entero_phiFL1A_NC_013646: recombinase; EGX33_09140; phage(gi281416341)0.0Showinfo_outline
45complement(310098..310988)PHAGE_Entero_phiFL1A_NC_013646: RecT family protein; EGX33_09145; phage(gi281416340)0.0Showinfo_outline
46complement(310991..311932)PHAGE_Entero_phiFL1A_NC_013646: endonuclease YqaJ superfamily; EGX33_09150; phage(gi281416339)0.0Showinfo_outline
47312005..312382hypothetical protein; EGX33_091550.0Showinfo_outline
48complement(312344..312619)hypothetical protein; EGX33_091600.0Showinfo_outline
49complement(312616..312714)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09165; phage(gi281416338)2.20e-13Showinfo_outline
50complement(312714..312941)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09170; phage(gi281416337)2.49e-49Showinfo_outline
51complement(312941..313264)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09175; phage(gi281416336)1.53e-69Showinfo_outline
52complement(313307..313492)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09180; phage(gi281416335)7.15e-29Showinfo_outline
53complement(313483..313677)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_09185; phage(gi281416334)3.83e-36Showinfo_outline
54313731..313913DUF1508 domain-containing protein; EGX33_091900.0Showinfo_outline
55complement(313953..314678)PHAGE_Entero_phiFL1A_NC_013646: anti-repressor protein; EGX33_09195; phage(gi281416331)8.41e-31Showinfo_outline
56complement(314698..315015)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; EGX33_09200; phage(gi971821280)6.74e-06Showinfo_outline
57complement(315027..315245)hypothetical protein; EGX33_092050.0Showinfo_outline
58315538..315972PHAGE_Bacill_BCJA1c_NC_006557: repressor; EGX33_09210; phage(gi56694874)4.17e-34Showinfo_outline
59315988..316467PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; EGX33_09215; phage(gi100052)1.90e-16Showinfo_outline
60316485..317270tetratricopeptide repeat protein; EGX33_092200.0Showinfo_outline
61317332..317748hypothetical protein; EGX33_092250.0Showinfo_outline
62317728..317742attR0.0Showinfo_outline
63317760..318890PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; EGX33_09230; phage(gi971821285)2.24e-77Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 435522 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download