Submission Results

Sequence Name: Not Available

GenBank Accession Number: RKPW01000008.1

GenInfo (GI) Number: 0000000000

Download Results: RKPW01000008.1.PHASTER.zip

gi|00000000|ref|RKPW01000008.1| Enterococcus faecalis strain P9 CL A7 2810_8, whole genome shotgun 83735, gc%: 36.19%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
140.4Kbintact1105229767-70261 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(11)34.97%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|RKPW01000008.1| Enterococcus faecalis strain P9 CL A7 2810_8, whole genome shotgun 83735, gc%: 36.19%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 55 CDS

#CDS PositionBLAST HitE-ValueSequence
129767..31704PHAGE_Agroba_Atu_ph07_NC_042013: threonyl-tRNA synthetase; EGX33_14345; phage(gi100705)5.91e-20Showinfo_outline
231869..34004penicillin-binding protein 2; EGX33_143500.0Showinfo_outline
334130..3427950S ribosomal protein L33; EGX33_143550.0Showinfo_outline
434293..34307attL0.0Showinfo_outline
5complement(34382..35563)PHAGE_Temper_phiNIH1.1_NC_003157: integrase-like protein; EGX33_14360; phage(gi16271777)3.90e-61Showinfo_outline
6complement(35717..36445)PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; EGX33_14365; phage(gi100027)9.55e-70Showinfo_outline
7complement(36504..36848)PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_14370; phage(gi281416325)4.90e-63Showinfo_outline
8complement(36867..37202)PHAGE_Entero_phiFL1A_NC_013646: CI phage repressor protein; EGX33_14375; phage(gi281416326)4.91e-39Showinfo_outline
937494..37676hypothetical protein; EGX33_143800.0Showinfo_outline
1037689..37991hypothetical protein; EGX33_143850.0Showinfo_outline
11complement(37983..38165)hypothetical protein; EGX33_143900.0Showinfo_outline
1238312..38440hypothetical protein; EGX33_143950.0Showinfo_outline
13complement(38421..38735)PHAGE_Thermu_OH2_NC_021784: hypothetical protein; EGX33_14400; phage(gi526118358)6.79e-20Showinfo_outline
1438811..39080hypothetical protein; EGX33_144050.0Showinfo_outline
1539115..39285PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_14410; phage(gi966198978)8.12e-25Showinfo_outline
1639286..39756PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; EGX33_14415; phage(gi725950523)5.81e-05Showinfo_outline
1739843..40142PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_14420; phage(gi281416336)1.71e-08Showinfo_outline
1840139..40363PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_14425; phage(gi281416337)7.96e-33Showinfo_outline
1940366..40473PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; EGX33_14430; phage(gi281416338)3.59e-11Showinfo_outline
2040466..41482PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; EGX33_14435; phage(gi39653695)9.10e-79Showinfo_outline
2141457..42260PHAGE_Strept_315.3_NC_004586: hypothetical protein; EGX33_14440; phage(gi28876302)9.19e-76Showinfo_outline
2242276..43064PHAGE_Lactob_iA2_NC_028830: DnaD domain-containing protein; EGX33_14445; phage(gi971747668)3.11e-79Showinfo_outline
2343076..43915PHAGE_Lactob_iA2_NC_028830: DNA replication protein; EGX33_14450; phage(gi971747669)4.32e-40Showinfo_outline
2444054..44323PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_14455; phage(gi966198986)5.25e-11Showinfo_outline
2544472..44942PHAGE_Lactob_Lenus_NC_047897: tail length tape-measure protein; EGX33_14460; phage(gi100057)1.98e-37Showinfo_outline
2644962..45570PHAGE_Lister_B054_NC_009813: gp58; EGX33_14465; phage(gi157325342)7.64e-12Showinfo_outline
2745576..45968PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_14470; phage(gi966198989)8.23e-87Showinfo_outline
2845978..46184PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_14475; phage(gi966198990)3.32e-33Showinfo_outline
2946202..46660PHAGE_Entero_vB_IME197_NC_028671: hypothetical protein; EGX33_14480; phage(gi966198995)9.65e-55Showinfo_outline
3046674..47201PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; EGX33_14485; phage(gi281416519)2.43e-53Showinfo_outline
3147363..47599PHAGE_Entero_phiFL2A_NC_013643: hypothetical protein; EGX33_14490; phage(gi281416521)1.72e-36Showinfo_outline
3247784..48251PHAGE_Brocho_NF5_NC_015252: gp53; EGX33_14495; phage(gi327197638)8.73e-12Showinfo_outline
3348573..48644tRNA0.0Showinfo_outline
3449022..49255hypothetical protein; EGX33_145050.0Showinfo_outline
3549473..49880PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14510; phage(gi31415845)2.54e-16Showinfo_outline
3649880..50254PHAGE_Bacill_phBC6A52_NC_004821: endonuclease; EGX33_14515; phage(gi31415846)1.64e-48Showinfo_outline
3750365..50817PHAGE_Bacill_phBC6A52_NC_004821: Terminase small subunit; EGX33_14520; phage(gi31415847)6.37e-32Showinfo_outline
3850814..52541PHAGE_Bacill_phBC6A52_NC_004821: Terminase large subunit; EGX33_14525; phage(gi31415848)0.0Showinfo_outline
3952560..53786PHAGE_Bacill_phBC6A52_NC_004821: Portal protein; EGX33_14530; phage(gi31415850)1.43e-177Showinfo_outline
4053758..54330PHAGE_Clostr_phi3626_NC_003524: putative prohead protease; EGX33_14535; phage(gi20065968)4.94e-40Showinfo_outline
4154343..55707PHAGE_Bacill_phBC6A52_NC_004821: prohead protease; EGX33_14540; phage(gi31415852)5.69e-147Showinfo_outline
4255709..55990PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14545; phage(gi31415853)3.01e-29Showinfo_outline
4355968..56294PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14550; phage(gi31415854)2.56e-18Showinfo_outline
4456284..56616PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14555; phage(gi31415855)5.98e-24Showinfo_outline
4556606..56962PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14560; phage(gi31415856)2.53e-15Showinfo_outline
4656959..57612PHAGE_Lactob_iA2_NC_028830: major tail protein; EGX33_14565; phage(gi971747639)5.40e-39Showinfo_outline
4757612..58040PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; EGX33_14570; phage(gi31415858)5.35e-38Showinfo_outline
4858289..60598PHAGE_Erysip_SE_1_NC_029078: tail tape measure protein; EGX33_14575; phage(gi985758890)7.08e-55Showinfo_outline
4960601..61305PHAGE_Geobac_TP_84_NC_041918: hypothetical protein; EGX33_14580; phage(gi100022)4.04e-05Showinfo_outline
5061302..64139PHAGE_Brocho_NF5_NC_015252: gp16; EGX33_14585; phage(gi327197601)5.42e-96Showinfo_outline
5164084..66573PHAGE_Lactoc_ASCC465_NC_017698: hypothetical protein; EGX33_14590; phage(gi100013)5.79e-07Showinfo_outline
5266613..67002PHAGE_Strept_SMP_NC_008721: putative holin; EGX33_14595; phage(gi119953751)6.32e-39Showinfo_outline
5367003..68304PHAGE_Entero_phiFL4A_NC_013644: endolysin; EGX33_14600; phage(gi281416489)0.0Showinfo_outline
5468710..69291PHAGE_Lactob_LJ_NC_048680: tail length tape-measure protein; EGX33_14605; phage(gi100057)7.57e-17Showinfo_outline
5570261..70275attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 83735 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download