gi|00000000|ref|UFTG01000001.1|  Bordetella avium strain NCTC12033 genome assembly, contig: 3721790, gc%: 61.63%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
731555..731602                     attL                                                                                 N/A                 ATTTGGAGGCGCAAGCCGGAATCGAACCGACGTACACGGATTTGCAAT
complement(731692..732663)         PHAGE_Pseudo_D3_NC_002484: integrase; NCTC12033_00686; phage(gi9635596)              2.37e-16            BordetellaaviumMSIYFDKSRRRYRFEFDRIISGRRVRATKLLPKAWSQAQADAFDREESSRLYAIAQGIKQESPLIEAAVQTYLEKKSELKSHATAMGHLAAVFEYYEGKRFSDLSEVCEKITEAGLKRLAPATVRQRIVLLRAACRFYWKTKRLNMPDPGQHLAMPEVRNERHEYLTRRQALQLARACKRRPARALILIAFYTGMRKGEIWAARVEPGRFVLEDTKNGDRRVVPMLPKIARYASRHLPPKISYRSMMIWFRKAAEAVNRPGLHFHDLRHSTASAMVQAGTPLYTVGKVLGHKSARSTARYSHLSTENLADALGAISQKRMGKS
complement(733079..733285)         Uncharacterised protein; NCTC12033_00687                                             N/A                 BordetellaaviumMTPNIKQTVLTDAEILQLFGHEQRDPYALTKFARAIESAVLEKLRLPTIRNSLMVGTAPTGIVADEHC
complement(733285..733503)         Uncharacterised protein; NCTC12033_00688                                             N/A                 BordetellaaviumMTPNTTCPGLADTALAAPNLWGQVYLGCRWLRGLSHEESEVIASEADKAFEGDPCVSLDDLHYTINEIARAD
complement(733500..734660)         phage protein; NCTC12033_00689                                                       N/A                 BordetellaaviumMTNQAIPHGWRLVPAEMTLDMSIAFAEAWYSKSRAIDDHEMQDAYAAMLAAAPSPGADTEATVQLSGHPGEMDESLRFSAQRILDAAFHWAEQRQIGPAQAKSAWVGLERHVLMQLRSQRYDRASRPAATAVSAEPVAKKAPRLVDDGSDSWDGARKRTPKPAAPPAADERALVGDERAAIQNHVDLVKAYGDQLYCKASASNPTDKQSWSKSAETVLSNIAKNYRAALASAPVAGENGAQSTQNRPESRANTGYTGGTLAPVAGEVNAALDEWLDKTDFIQERIASGDLPVKYLGWHRADVMRDLIDDSKTEPLNAAPQASTAADARDALAWGVIENARAAMDASFESGDESLGVSVPSHLAAALCLALDELDAIVAKQGEGETA
complement(734657..735559)         PHAGE_Acidov_ACP17_NC_041997: hypothetical protein; NCTC12033_00690; phage(gi100146)     2.76e-69            BordetellaaviumMWFKNLKVYRLSGAWSCLGETLEAALAKHAYQPGNNLEMQRLGWVSPRDTGLFAHVLNGQILLVLRSEKKLLPSTVVNQVARARAQEIEEQEGYKPGRKQMKEIKERVTEELLPRALSVYRDTRVWIDTQHRWLVIDAASSARADEVIGLLVKTVDPLPLENLYVAQSPAAAMTGWLAEDEAPANFTIDQDTELRASGESRAAVRYVKHSIDTDDARRHIQSGKQCTRLAMTWADRVSFVLTESLDIKRVTPLDVLKERPDDLGANADERFDSDFALMTGELARLLADLIDALGGEKEST
complement(735722..735889)         phage protein; NCTC12033_00691                                                       N/A                 BordetellaaviumMPGFVVLGVRPGRIDQLISTQVSAQERRLKRRTTPEAHALRIEKARARALAAPPS
complement(735968..736984)         PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_00692; phage(gi100029)     9.22e-162           BordetellaaviumMSQTTSLADLKKTSKMVASQAGIGQVKAFFDSQKSTLAAVLPRHVSADRMLKIALGALRTTPKLMGCTVESLMGAVVQCSQLGLEPNTPLGHAYLIPFEKRRKQGNDWVTDKIEVQIVLGYKGLIDLARRSGQIVSIAAHAVHENDHFEYAYGLDEKLEHKPAMGERGAIIAFYAVAKLVGGGHAFEVMSEQQIIEIRNASQGWQQAVRAKKTDASPWGAHFAEMGRKTVLRRLFKYLPVSIELANAAALDELNARGESQALDNVLEGEYITPAPGDDDAAPAAITYDPSPLFQQIADAASLDALDLVGDSLRDAPDEHYDALQRAYQNRRAELTSAD
complement(736996..737850)         PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_00693; phage(gi100028)     5.92e-107           BordetellaaviumMNAITEATRLIDAPCVIEGQPIEQYHGGPGISKTGLDRINVSPANFYDLTLNPVRPPEPERKGQLEGQLAHCAILEPEEFAKRYAVGPDVTRSTKEWKAFEAALPAGVIGIKPDQRETAMRQAEAVRRLPDVAEALAAGVAESSAYWIDQETGVLCRCRPDWCHPAGESGVILLDVKTFSDASPHEFSHQIARKRYHVQDAFYTDGYAAASGKTVLAFIFVAVQDAWPFAASAVMLDPRSQDQGRRDYRRNLSTYAECLTSGNWPGFGQGVHLASLPNWAFNDE
complement(737854..738039)         phage membrane protein; NCTC12033_00694                                              N/A                 BordetellaaviumMIRRALAYLHAKRLDLDLAGYAAMVAALAMATGLIGPTLDAHPSTLTACEGCGKTAYAAKD
complement(738036..738323)         phage protein; NCTC12033_00695                                                       N/A                 BordetellaaviumMLHYPELTDQQIIDALYELFAGEADIAFGQDREWWADAIIDGGHDALCRIALTALSTTPVPEYVTQTQRELRADLIGIARLLMGKAHAEGREIHA
complement(738413..739171)         PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; NCTC12033_00696; phage(gi966200469)     1.39e-39            BordetellaaviumMSQSQCALALDVSPIEVPFHGAVLLVVEHNGQPYVPMKPVVEGMGMAWQPQHRKLAAAEKRWGITILMIPSNGGNQEAVCLPLRKLPGWLMTISPNKVRPELREKVITYQNEADDILWDAWQQKAATPSTPRIDVRALLLSGQSDLTIELPEHIQAALNARAGVLAGEAFVLIREHLRRRIAFGAVNGHHQLLRDDLVLNLIADGDLGDALAHEYITKIRNLFSYLNGIADAACRSRDQAGEHLKALHTTHW
739488..739679                     Uncharacterised protein; NCTC12033_00697                                             N/A                 BordetellaaviumMTIMISEVYEAFRAAGVPEDKARKAAEAMSAETLATKTDVAILKWMVGFNLAFTMAMLWKIFS
739727..740113                     PHAGE_Endosy_APSE_1_NC_000935: hypothetical protein; NCTC12033_00698; phage(gi9633594)     2.97e-12            BordetellaaviumMSIVTFDTLKFVETLEKAGVSREQASAMATAVRDSHEGAELATKADLREVRVEMQQYESAIRSDLEKLELSLRNDMEKLETGLRHEISSVRQEINSVRQEFNGKFQLMQWTLGVVVAGVMALILKAFF
complement(740114..740239)         phage protein; NCTC12033_00699                                                       N/A                 BordetellaaviumMTKINDGGPAFPRDERYLGHNRGDLRQRIERRLIDLAKDAA
complement(740236..740721)         PHAGE_Strept_Gilson_NC_048742: hypothetical protein; NCTC12033_00700; phage(gi100222)     1.99e-09            BordetellaaviumMTPSRKQVEAARPKFLEWLVARGAQVLRPTSEWELVRFDCASGVAIIYSNAKGSTTFTGQALAAWSAYKGAMAWDAGVRTKRAKVSPLIRTLLERDGDRCFFCHEHTSDDDRSAEHLVPVAHGGPNHISNLVLAHKACNARAGHLSAMEKIRIRDQSREQP
complement(740718..741002)         PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC12033_00701; phage(gi985757659)     2.24e-05            BordetellaaviumMTTKHTKGPWRYDYEPGYCGELIAADGSVVCVFTEEPGLDDAKVLAAAPDLLEALQETQSLLTAMLHEQRPQSEVEAQIAENRAAIAKATGGQP
complement(741103..741429)         phage protein; NCTC12033_00702                                                       N/A                 BordetellaaviumMQVTMQGGRVVVEPTPTSRRVPLGAGSTLCETLPLTETQRLQVIYRAIKLDGYAFGRHATEYLEDVFNHVVRADADTQALIALGVGVNRDEIRQRIEARLLELSERSQ
complement(742067..742858)         PHAGE_Entero_P1_NC_005856: SimC; NCTC12033_00703; phage(gi46401665)                  1.43e-05            BordetellaaviumMKLPRNQLGLALFGATLVLSPMAASAQEKVVSEFSAGKSHRYELSKLEYSVFKTLVDDDANNLASGNDSLLGERMGLTDTTASELAKAYSDNEVAADKRFKKKPLLINGKIGSINSGIGGAPYLALGTQPSSPHARLHKSALDFAASAKKGQSVSLICTGAGATITIPMLDDCRPARAVADEEATKLTRRVDRVLKGLGSDESAQQLLAISIYAASTIKGDSCGPNAAACLKNVKTAMKAPGAKEGILKAMETLKLAGISLAK
complement(743149..743976)         Uncharacterised protein; NCTC12033_00704                                             N/A                 BordetellaaviumMGQESPSIDFLYDFLYLDKPRAQSWLAQLVADGVPLSTKYQSSSTDSSKVNAAGGIPGVLKGGGSSVESVTETMERSFNTEWSIPLNLLDTLSEANYVSKGLNGAPIGSVIHIHGQANIIDISFMQAGWSAFTDLMLGQVKTTHSNKAAKAAEKTEVAQLGAALKVMPPMPQLYLSTVGGEVAWSVLHEDHMLIDPSALTLTYGANIKGDWHVLAVLDALPDGNDTPGTSIKIGKPISDGLLPVMEAIREAMGRPGDAYAVNPIAIFRAIKPSTR
complement(744210..745283)         PHAGE_Haemop_Aaphi23_NC_004827: putative CI protein; NCTC12033_00705; phage(gi31544010)     7.26e-12            BordetellaaviumMKIWSVEEEAENLRARFQGVNRAAFARENKIPGGQAMVYQHVTGRRPLNLEAATAYAAGFGCPLADISPRLAIEAGKAAALSSEASPGQSNKPYAWPFPSIDESEIRGLPESQLRALEGALALAVAQLKIGITVSRQPAASEAKTGSRTTNFDSAPDEFPMRIPGIPPAPTQIKEPVPAYVTPRLSLAQATAVNVVAAEQHADNDEWESVPEMADVRLAAGEGIENHTEEMTGYVYFRRSFLRSVGADGQRGRMVYAKGDSMEPVIRDGAALLVVPDLGLTLHDLAAGGVYAINYDGKMLVKTVAKDRLTGRWVARSFNARHPDIPLEDGASVRVLGRVVWAGAQLGEDEQGQWVRR
745355..745612                     PHAGE_Aggreg_S1249_NC_013597: recombination protein; NCTC12033_00706; phage(gi100049)     1.76e-07            BordetellaaviumMNLNQYLDRKGSPKAAEFARIIGVSSALLYQWRQGIRPVSVKWCLAIEKATSGLVTRRELRQDDWQLFWPELANQSTPKQEASHA
745605..745772                     phage protein; NCTC12033_00707                                                       N/A                 BordetellaaviumMREEYAQSMQRSAHMFRLVVGGALTLRAQLAEQIHYDGIGRVFKVAAGKVLRGAQ
745812..746144                     PHAGE_Salmon_SEN34_NC_028699: putative DNA-binding protein; NCTC12033_00708; phage(gi966201462)     3.11e-05            BordetellaaviumMNEQAVSDEQRAMVSNIGARLQAEVLQRLAAITQKHAAECMGVHPSKVSRMVSEDLMEFCCLLAAAGFQLTTGDSVVMDQNEQIAIESMALKWMQARHQARLETVRQKAK
746146..746619                     PHAGE_Flavob_vB_FspS_hattifnatt9_1_NC_048832: exonuclease; NCTC12033_00709; phage(gi100048)     8.24e-06            BordetellaaviumMAKIALRVDERGKLAGLTPFDDRAYSRFKKKLGLLRPGDTISFEHRFPRSPKFHRLHFALLGAIFDNQDQFVSPEDLRKWVEVGAGHCRFVPGPKGRLVALPLSISYESLDDAEFYDHHIKVVEFLRSQAATRFLWPDVDDSAALAGIEAILAGFGA
746616..746987                     PHAGE_Salmon_SJ46_NC_031129: portal protein; NCTC12033_00710; phage(gi100069)        4.10e-10            BordetellaaviumMKGRNPTAEQKRFWDMLARNIGCVASRMDGFFDSQCSIHHIDGRTKPDAHWLVLPLSAGNHQDGTGAPGRIAVHPWKTRFEERYGKQRDLLVWCIEQLQAQGLNVPDGALRAAGMLEESRALL
746974..747765                     PHAGE_Acinet_AbP2_NC_041998: putative replicative DNA helicase; NCTC12033_00711; phage(gi100080)     1.37e-52            BordetellaaviumMHYFKRNIGDYHKKAGRLSMLEHGAYTLLIDSCYDRERFPTIDEAIDWCWARTEEEIAAVRFVLGKFFDLVDGRYVQARIQEEIDAFHAKSLKNKEIAEEREAKRRTAREQSSTKRAQGVNEAPPNQEPITNNQEKEIPPNPRKRGQSFDAAAIDLPDWLDRESWETWVADRKARKKPITEKAAELQIKQLADLLQQGHPPADVIAHSIASGYQGLFAPKARGNATPASKSQRMDEWNAELNDVLAESRRPTEIFMGTIDATH
747752..748450                     phage protein; NCTC12033_00712                                                       N/A                 BordetellaaviumMQLTDHHMTSLGALVINEMRLMYGTKFGQQWQGLTARELKDSWDQKLSGLTEREVRTGLTACLTRDWPPSLPEFLRLCRPWMNPEVAYHEAVVGMASRRRGDMGTWSHPAIYWAAVHAGSHDLLNSSYSVMKTRWERAFGDELAKGQWHGIPEVLEVLPAPGQTQATREEAAAALKAMGADKVLEPKRSRDPRNWAKKILEEQERKGGRRYAFATLTMAKRALGLELNPGEA
748447..748818                     PHAGE_Sulfit_NYA_2014a_NC_027299: Rus-A like endodeoxyribonuclease; NCTC12033_00713; phage(gi848469692)     5.75e-11            BordetellaaviumMISLRLPWPPKELSPNFRGHWAPISRAKKSYRTAARLTAMKALRHAERFDRFGGVRITYEFCPPTARAYDRDNLAARMKAATDGISDALGMNDRGFHFAPVAIGSKEKGGLVRVTIESLKEGV
748815..748973                     Uncharacterised protein; NCTC12033_00714                                             N/A                 BordetellaaviumMTIIQKPRARQERGAWLVWCAHIGPSPRATFDEAYRAWATRRGINHSNIGAA
748973..749305                     phage protein; NCTC12033_00715                                                       N/A                 BordetellaaviumMGHPRTVEQSDRYWRQAAVERLRGMGIKLNRFRQNAEGVASEIRRIEPAYRGGDPNLVIRAWMGAAAAPKVEVQRRIYMPSAAMRFAALRSQQAEPSLKALGSPSVRSYP
749305..749706                     phage protein; NCTC12033_00716                                                       N/A                 BordetellaaviumMRRAVGDSAIPRWVEDELHNWARSQWEGEWPGPGRPDHGAPVVCEFPRQPDDEGGDVLVPICYDRAYKVHALYEALPLIERRVIQAEYTRRREYGDMTIKERQEAASQLIGIPAAYYKIALGSFKIQVWRMFE
749703..749996                     PHAGE_Ralsto_RSK1_NC_022915: hypothetical protein; NCTC12033_00717; phage(gi560186072)     2.89e-07            BordetellaaviumMKYAREILGLMRPYPGRQFRMAELVRGVNPMAEGAERQRIRNGVLRVLAELEQNGSITRVGPAQARGGYALYSWKVPHEVYQKCHLECHNSRRTIAP
750116..750622                     PHAGE_Escher_Lys12581Vzw_NC_049917: hypothetical protein; NCTC12033_00718; phage(gi100013)     5.22e-32            BordetellaaviumMDLTQVQDMVSLAGDRLVTDSRRVAEKFKKRHRDVLRAIRVLECSADFRARNFAQCFEINDLANGKPEPDVQMTKDGFMFLVMCCATRAAAAVKESFIEAFNSMAEYIRSGREGLWQQMHALLATDADSKARASVGSRLMLDRKREKPLLEQRFADLMARIQHPLRLA
750697..751065                     Uncharacterised protein; NCTC12033_00719                                             N/A                 BordetellaaviumMDSLSLVGVASEMHFDLFDDGIDLPTEEIEALWHTAADRAQMKIEGDDLPIVLVYMALANFSDAMADRLGHKVGDADFAFQWASGLPNFDRGCRDLAIFTAHAMADMKDAGDQLAALRQTIH
751104..751688                     PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: hypothetical protein; NCTC12033_00720; phage(gi100039)     1.24e-37            BordetellaaviumMALTAKQRRFVDEYLVDLNATQAAIRAGYSKKTARQIGEENLSKPDIAKAVQEAQAARSKRTEITQDMVLRELAKIGFADIRKVVNWGSTTLQAGVDDDGNPTTEVHHGLVLVASNEIDDATAAAISEVSEGREGLKVKFHDKKGALVDIGRHLGMFKDRVEHSGPGGGPIKSISAVAATPEEAAKIYQQMMSA
751690..753285                     PHAGE_Salmon_SEN34_NC_028699: terminase large subunit; NCTC12033_00721; phage(gi966201419)     0.0                 BordetellaaviumMPIPFPFDFKSPDYKAVFEWRIERLNRIRANPACLPAMKAYYKSHPAQFIIDWGMTLDPRNVERGLPSSVPFLLFPRQEEWVYWFMERWKRQEPGITEKTRDMGMSWLTIGLACTLCLHNNGMVLGFGSRKEEYVDKIGSPKSLFDKARTFMRMLPAEFRGGWDSGKHAPHMRIIFPESDSIITGESGDGIGRGDRTSAYFVDESAFLERPQLTDASLSQTTNCRQDISTPNGMGNPFAQKRHSGRVPVFTFHWRDDPRKDDAWYAKQVEELDTVTVAQEIDINYAASVEGVVIPSAWVQAAIGAHQKLGIDPSGRKYAGLDVADEGTDANAYAMRHGVLLANLDMWSGKDSDIYKTVVKAFGLCEADGLNALDYDADGLGAGVRGDAAEINRQRRAANRPPIHANPFRGSGEVYDPDGEMVPKRKNKDFFANAKAQAWWALRLRFQATHRAVVEGQEYKPDEIISISPDLKHLTQLTMELSQPTYTVNTVGKIVIDKRPDGTKSPNLADAVMICYQPATRALSVWEALAK
753296..754750                     PHAGE_Salmon_SEN34_NC_028699: putative portal protein; NCTC12033_00722; phage(gi966201420)     4.05e-165           BordetellaaviumMNRKQRKAMARQASAAPKPTRDSFVNFESRVGIQAANQSKAGHYTFDYVTRNRIQMEAAYRSSWVCGIAVDAVAEDMTRAGIDIHSDRRPEDIEKLNSAMERFQIWNQLCDTAKWARLYGGAICVMLIDGQDVKTPLNLDTVGPGQFKGLLVLDRWLVQPSLQDLVTEYGPDMGKPKYYHVLADAQALINQTIHYTRVIRMDGVELPYWQRIAENLWGQSVLERLWDRLLAFDSTTQGTAQLVYKAHLRTYKVEGLREIIAAGGQDSGNLAYMGLLGQIDMIRRFQSNEGMTLMDAKDTFEAHQYSFTGLDNVLLQMGQQISGATQIPMVRLFGQAPAGLSGNHDGELRNYYDQVSQHQDRKLRPGLTTLLDVIHRSELGSAPDENFSFEFRPLWQLSDTEKAEIAEKITNTVATGLDAGLVTQKTALSELRNASHVSGVWSKITDEDIESANDDPPDPGEMNVPGSEIGKPGQDPNARQEAPA
754755..755480                     PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; NCTC12033_00723; phage(gi966201421)     7.59e-48            BordetellaaviumMPTRKAENSFAFQLRKVARHIGEIINGFPAGDPQYLPSIDDMLRRYSDALTAWATVTSQKMLLDVDRRDKQTYFEKAKEMSKALADEIRNAPTGEVMRGLLAEQVGLIKSLPLDAAKRVHELTLKGLEDSTRASEIVKEIQRSGEVSESRATLIARTEVARTAAHLTQARAQYIGSTHYIWRTLGDSDVRPGHKAMNGKVCAWSDPPLVNEGTPAAPNWIAHHPGEIWNCRCYAEPIIPDL
755521..756801                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00724; phage(gi966201422)     3.69e-59            BordetellaaviumMSIKTNDKTPMPFYTVQKLGEKQELTNEGFLLCRDVPIARIGELLYADGEVPVEATPDGLIKINRSPEEVFRPETIASFEGKPVTLDHPDDFVTPETWRQLAVGTVQNVRQGQGIENDYLFADLLITDAQAIEDIRSGLREVSCGYEADYEQVEPGRGEQRNIIGNHVALVERGRCGPRCAIGDKEPSMKKKTLVQRLWGAFGTRDAAAMTEAMEELETMDESEERKDQKEAKDESEEKVDNDLDRDILARMDRLEAMVAKLVDGATDKEKNDDEEKTKDTILNAEEGEHNTEAKGEAYTGDSLRKLAERAEILAPGFKLPTFDAAKGMTADAACSCQRKALAAAYDTEAGRKAIEPFLGGKTADFAGMKPEQVVAIFAGAAEVRRMQNNAAGIRSGITTRDFGGPVTAAEINARNRAHWDGRSAK
756816..757310                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00725; phage(gi966201423)     3.63e-27            BordetellaaviumMATNAILYRMPYGIPGDVTRQSQSTIEPQLFNPAATFPAYGLFGKIDNGRFVPIGAGDAAAAVYGLLVRPFPTQSASTAMGIAQPPATGPADVLRRGYAAVKLRGSAAAALNGQVYVRVANETADQPIGGIEAAADSTNTIEVASCIFMSAADADGNVEISFKV
757372..758358                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00726; phage(gi966201424)     5.08e-121           BordetellaaviumMKKSNIIRAYTRDGLMTFDQRTIDSAGAFLVGELERLDQNLHAPLAAVTWSRDIDLREDVSVADEFSSFTNSSFAAASGTGLSGKAWIGKEANAITGIGLDIGKTAQALSLWGMQLGWTLPELESAQKLGRPVDQQKYAGMQLKYNMDIDEQVYIGDVGLGQTGLVNGAAVTNVANATTGNWATATAAQILADVNELLSSVWAASAYAVMPSRLLIDPTNYGRLVSTIVSSAGNISILEFLKVNSLSNAVNGRPLDIQPLKWLVGRGTSNTNRMVAYTKEMDRVRFPLVPLQRTPLEYRDLRQLTTYFGRLGAVEFVYPETVGYRDGI
758369..758572                     Uncharacterised protein; NCTC12033_00727                                             N/A                 BordetellaaviumMAKVRVIKAFRLNAPDGRQLEFQKGVQQIDDGLVNHWFVQAHIEAEKVQEAKPEARRPGRPPKDESE
758576..758959                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00728; phage(gi966201426)     1.25e-34            BordetellaaviumMDLAAFRADFPEFADTARYTDSQLTLWSTMAEAMLNQSRWGTLWPLGVKLYTAHHLAIAVRNQQASAAGGIPGQVTGPQSSKSVDKVSVSYDTGSAANPDATFWNLTTYGIELWRLIQMFGAGGVQL
758968..759453                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00729; phage(gi966201427)     2.24e-40            BordetellaaviumMGVEMRVDRLQDIIKTLHSIAQKDVLVGVPDSSPERDDDAEYSNAQIGYINEFGSPPNNIPARPHLIPGVEAIQDQAAGILKRGGQRALDGDAQAVDQSLHAAGLLAVNSVRKTIQEGDFPPLAPYTLQKRREAGRTGDKPLLDTGQYRNSQTYVVRKKDK
759456..759827                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00730; phage(gi966201428)     7.14e-32            BordetellaaviumMPLLDVTEVLLDPDFLDTTLTCTRQTQTVNQYGEAVNAQQVIPFSGVVTSDQGDILDRIAEGSRIKGSILICTKFTLIPGTAGRDADLVTWQGRQYTVSNVNDYTTYGPGFVEALCDLIPLKG
759831..760415                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00731; phage(gi966201429)     3.30e-35            BordetellaaviumMANTSATGGYLAPVAPTPPTQDQQLDRLLQAYLKGLTGIDGQYVRPRWQPTVPKQPEQNVDWVAFGVMETLSEDFPTIRHNGTGDGSGTLQRQQELRVLCSFYGPNSMQYADMARDGAYVQQNNETLKRAGLTLIESGPLRQAADFYNQQWIRRWDLSFRFRRMIVRTYPVLNILEAQGDIEADNGLTNSINVP
760475..761956                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00732; phage(gi966201430)     8.29e-92            BordetellaaviumMAQGLPVSDVVNVQIVMSPLAAATRDFGALMIVGTSSVIDVQERIRQYSDIDGVANDFGATAAEYLAANLFFSQSPQPSILYIGRWAQTATAGLLRGAILANGQQAMSNFTSVTDGSMKITVDGVEKTITGADFSAETNLNGVASEINSLLTGAVVTWDGASDRFIVTSSTTGASSSVGYATANTTGTDISGLLGLTQAQSAVPVPGVAAETMLEAYQALGNASTAWYGSMTATTATITDDDHLAVAAYIESASPTRIYGVTSQSTAILDGTLSTDIASKLKAAKLKRTFIQYSSSSPYASASLYGRAFTVNFQGNNTVITLKFKQEPAVGAENLTASQAAALTAKNCNVFVNYNNTAIIQQGVMANGYFFDEVHGTDWLQNDVQTAVYNLLYTSTTRIPQTDGGINQIVNTINSRMDQAVANGLVAPGQWNADGFGALNRGDYLPAGYYTYAPPVATQSQADREARKSPVIQCAIKLAGAVHFVNIIINVNR
761967..762410                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00733; phage(gi966201431)     2.52e-47            BordetellaaviumMTQAYSFIDVNATLTGPTGVFDLGYGAGTAEEGITITPVGDKNTMTIGADGEYMHSLHADKSGTVTVRVLKTSPVNAKLQLAYNAQTASSLLHGQNIITVSITGTGEQVVCRGVAFKRQPEAVYAKEGQIVEWTFDAGKIDKTQGVF
762411..762806                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00734; phage(gi966201432)     1.36e-16            BordetellaaviumMSDFEYGGHQYSIGKLSAFKQLHVARRVAPILTGLADMAMASEGKTLDFKQAVEPMVLAVSKLSDEDTELIIGTCLGVVSRKTGNKTAAPVFSSGNCMFDDIDMVGLLRLTAEVIKVNLGNTFSALLTAGQ
762993..764672                     PHAGE_Salmon_SEN34_NC_028699: tail tape measure protein; NCTC12033_00735; phage(gi966201433)     8.38e-62            BordetellaaviumMADQNIIREFLVSLGWKIDDKGERRFVETVEKSTKRVIALGTAATAAAAAVVAATAKMAAGLEEIYYTSQRTKTSSQNILALGFAAGQAGSSANALRGSLENLARLIRSAPGSENLIQSIGVQTRDANGQLKDTGEVLTDLGERLKAMPYYRAKAYADVLGIDENTLMALQRGLGEFSAEYQAMLKDAGLDAEEASKDSKEFMNQLRLLGATFDILSKKAGTSLLKGLGDIVQRFQRLVRENFQEINEIIVLLGDTAGGFLNLLGRIGTAIGPYVRDAVKYIKEFGEEADKAFGHLDLSDAAAQFKRLGDATQDVWRVIEPIFKKLGMGNLDKFLQSTVDEAGDLAGIGAALLKGDLAGAKAVIDQRKARQAARPAGDGYSPSSKDPRGIRNNNPGNLVYVGQAGASKEANGRFATFSSAQEGLNALAAQLRRYGQRGLNSIQSIVNTYAPASENDTGAYANYLAQKMGIGTSTKFDVNSDPSALAALIRGVVEYENGRNPYSNDMIAQAAGMSTVNLTQNVQISVAGTEDPYATANEVARQQRAIGSDAIRNLRGATR
764669..765247                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00736; phage(gi966201434)     1.49e-33            BordetellaaviumMMVGDVLSSIFIRRKRSIADVIPDVAVEEIHSDDLIVTDHPVEQGASISDHAFKKPAEVALRYGWSNSSAVNNVMRGGLTVSVEDVYQKLLALQESREPFDLITGKRAYNNMLIVSLKVETNIITNDVLYISAICRQIITVPTYLTAAAPHEDQSNPEVTGNVEVFPIEQPQPLLAIPDGINAVEGLPGSKS
765244..765549                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00737; phage(gi966201435)     2.37e-20            BordetellaaviumMNVFKIPLANRAQTFPIVLSNVEYRFRIVWRDPQGWVLDILDSLNNPILCGMPLIPGVNLLRQFDYLGIGGGLVVLTDGAALIYPTYDGLGKESLMYYVTE
765553..766479                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00738; phage(gi966201436)     1.29e-58            BordetellaaviumMAIQWLRKSALALENASGDQLDISELHFKFVISAADVQTPAAAQIRVYNLSDNTAQRIQKEFAKVTLRAGYEGNFGTIFSGDVKQIRRGKETSIDKYLDITAANGDMAYNFAVANFTLAAGWTAAELYNALLQELSLYGVTAGYAPPFPATVYPRATSFYGMVRDRLRELAEMVGCSWSIHDNRLYLIPISGYIPGDTVVLTSKTGLIGFPEQTINGIHVRCLLNPNIFIGRGIQINNGSVQEAQINVAYTAFNYFPSIAQDGKYKALAVTHIGDTRGQSWYTDSICQAIDGTAPMSRSILTVVPNNG
766472..767218                     PHAGE_Salmon_SEN34_NC_028699: baseplate assembly protein; NCTC12033_00739; phage(gi966201439)     3.52e-58            BordetellaaviumMDRRERWNDPEEAIRAALEARQSGVQTAIPAIVVSFDPETVTLAAQPVVQGTVQAATGAYSTVNLPVLQDVPVAFPRGGGCTLTFPISAGDEVLLVFSSRCIDGWWQTGQVGPAMDARMHSLSDAIAIPGLFSQVTKINGISTNSAQLRSNDGLTFIELDPTTGKVKIVAPGGFDVQAPQSNFSGEVLVNGLLTYVAGLIGSGGAGSAAEITGIFNVVGQIIANGKRVDDTHRHSGVQPGASNSGEVV
767576..768754                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00740; phage(gi966201442)     1.95e-102           BordetellaaviumMSTPITPYIDETGFHGPTYQDVVDYIKRKYREIYGNDIYLEEDSQDGQLIGVFALAFYDCVSLASAVYNSFSPGTSQGVGLSANVKINGIRRRVATKSTVDLTVTGQAGTVISNGQALDNFNNRWSLPPSVTIPLSGAVTVTATAQNFGAISAVPGSITRIGTPTRGWQSVTNPLSATPGAAVETDAELRNRQTFSTALPSRSVLDGTVGAVGNVRGVTRFKGYENDANAISADGLPPHSIAIVAEGGDAFEIAQAIAVHKTPGTYTHGNTEVMVYDAYGVPNTIRFFRPKVVSISVIVNIQALQGYSTPYGDQIKAAVASYINALGIGADVLYTKLYTPANLPGQASGETFSITSILVARDNAAPAAENVEISIDELPECDAAGITLNVTA
768762..769433                     PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; NCTC12033_00741; phage(gi966201443)     1.68e-41            BordetellaaviumMAENKYTAKITSEHSQRPKFMGVVFNNTQPFCSLFHFLGSYTQAFDLDAAIGAQLDHIGQWIGRSRFVDIPLTGLYFTWDDTADVGWSSGLWKGQFDPESGLISLPDESYRTLLKAKVAANSWDGSIPGAYAIWDAAFGGQSHIIIQDNQDMSMSVAIAGQPLDIVTRALLTNGYLPLKPEGVRINFYIITPVDGQLLAWDAESTALAGWDAGNWGIEITTGT
769436..770329                     PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NCTC12033_00742; phage(gi937533295)     2.53e-24            BordetellaaviumMAINQLLQFATADTNVLTQDEYSADPQRISGNIPGVARSKLVNKAARQSAFVAAMIGQYISEKSGKDVMDNGDIDALKINFIAALAASPSFTGTPTAPTAAPGTNTTQLANTAFVQTSIYQALPAGIVGYFAMSNAPFGWLKANGAAVSVAAYAALAANIYCGDALNATAIFGYRCTDPVNPTTTRSTSGAYIVLPDLRGEFPRGWDDGRGVDPGRAFGSAQQDSLQNVTGAFGTMVGAGGSITANGVFSIANQSTGVYGSGASGSGGSVNFDLSKAARTAAETRSRNVALLACIKY
770341..770952                     PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; NCTC12033_00743; phage(gi16129505)     9.53e-24            BordetellaaviumMEASGINSGKVVSQLDADGCYCRPTVADESPLESGVYLIPGGAVDIAPPELVSGKAFRPREDHSGWLAVDDNRGAVLYRTSDGQAYEPGRQHGEDGTYAGLGPIPGWLTTEARPDPWSVWNSGAWVRDEAAWRASVVAGNIAKKSQMTADANGHIATLQDAVDLGIATEQEVAALKLWRVYRVELSRVDVSAESPVWPVEPTA
771043..771255                     phage protein; NCTC12033_00744                                                       N/A                 BordetellaaviumMNNDGLNLAISAGTGVAAWLATFSAVVPVLWGVYVLILIAIKLPELHEKNALFRRACAWVVSIVRRGRHG
771248..771703                     PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC12033_00745; phage(gi100023)     1.01e-49            BordetellaaviumMDKGKIAAGVVSAAIALVAAWEGRSLVAYVDPIGIPTICEGYTHGVKLGDVATPERCDALTEQEVRRALAVVDGSVPRPLPDSVRVALASFVYNVGPGAYGGSTLTRKLRAGDLAGACRELPRWVYAGGNKLRGLERRRDAEMRICLSDLQ
773968..774015                     attR                                                                                 N/A                 ATTTGGAGGCGCAAGCCGGAATCGAACCGACGTACACGGATTTGCAAT

#### region 2 ####
1239852..1242116                   PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; NCTC12033_01179; phage(gi100004)     0.0                 BordetellaaviumMTKSTGKTSSAIEAADASPTMAKKRAISMAAEKTPAKTVVKVAKTATKTAAKKAAKPAAAAGEKTTKTRVKKAEDKLADLVGGAARVPSGRRPGRPAKNANNDSDTFDDPMDGEGEVVPDFKPVKRGGKRGKGDPKDLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGISVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHATRVREGQNQIDEVVDGLVDPEDGEEYAGAGVSADEEEGDDGPAGGMSSKQLEDLRVKALAKFDEVSRQFDKMRNSYEKDGYRSDIYISAQETIQNELMGIRFTAKMVEKLADTLRNQVEEVRQLERAVLHTCVDRAGMPRSHFLKVFPGNETNLQWVVEEVAAGHPYAETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
1242124..1242202                   tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
1242156..1242202                   attL                                                                                 N/A                 GACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
complement(1242227..1243219)       PHAGE_Pseudo_PAJU2_NC_011373: putative integrase; NCTC12033_01181; phage(gi209552450)     9.12e-11            BordetellaaviumMPIYRDKARGCFVFEFDRAIEGKRVRTSKLLPKSWSRAQADAYDRQEAARLYAVATRVERPQFLIEDAVTIYLKERAPHLKSGDIIIRELGLMYWAYRGKPISELAEACKLYGEKAIRDDGSELAPATKRNRIRYLVSACRYAWKRHGMSEHDPGARVLTPTVRNERQFYTDRRGMLLIAKACTCKATRAAIRISFYSGMRLGEVVAAVREDGLFKLPDTKNGLPRFVPIHPKANAAAKVRMRDKWTMSKNFKKAARAVGMGHLRFHDLRHSAASEMINASVDLYTVGAVLGHKSATSTKRYAHLATETIGGALANIGRKSPDAKKQRVA
complement(1243895..1244188)       Uncharacterised protein; NCTC12033_01182                                             N/A                 BordetellaaviumMGKDFIPRPACTVASGDCLYAGRCLLQCTTRLTAAAANEKLTEALALLSKLREYTISFRSVTLYVDGSEIDAAVRKAGQLLNASRRSAAPSIQGEGR
complement(1244188..1244700)       Uncharacterised protein; NCTC12033_01183                                             N/A                 BordetellaaviumMTNQVIPQGWQLPLDLAIDAIENAAPMGQDWPVNWPLVLHGLKELRSALASAPDADGCRHVDTSETSAEPVAWMMAKRERNSDPKFTFADPSGVYQSEYLALYTAPQASPAADARDAKDAARYRWLRSLESFREHDDWTIYDGGGHAARGQSLDAAIDAAIAAQQGKGGE
complement(1244833..1245849)       PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_01184; phage(gi100029)     7.66e-162           BordetellaaviumMSQTTSLADLKKTSKMVASQAGIGQVKAFFDSQKSTLAAVLPRHVSADRMLKIALGALRTTPKLMGCTVESLMGAVVQCSQLGLEPNTPLGHAYLIPFEKRRKQGNDWVTDKIEVQIVLGYKGLIDLARRSGQIVSIAAHAVHENDHFEYAYGLDEKLEHKPAMGERGAIIAFYAVAKLVGGGHAFEVMSEQQIIEIRNASQGWQQAVRAKKTDASPWGAHFAEMGRKTVLRRLFKYLPVSIELANAAALDELNARGESQALDNVLEGEYITPAPGDDDAAPAAITYDPSPLFPQIADAASLDALDLVGDSLRDAPDEHYDALQRAYQNRRAKLTSAD
complement(1245861..1246715)       PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_01185; phage(gi100028)     5.92e-107           BordetellaaviumMNAITEATRLIDAPCVIEGQPIEQYHGGPGISKTGLDRINVSPANFYDLTLNPVRPPEPERKGQLEGQLAHCAILEPEEFAKRYAVGPDVTRSTKEWKAFEAALPAGVIGIKPDQRETAMRQAEAVRRLPDVAEALAAGVAESSAYWIDQETGVLCRCRPDWCHPAGESGVILLDVKTFSDASPHEFSHQIARKRYHVQDAFYTDGYAAASGKTVLAFIFVAVQDAWPFAASAVMLDPRSQDQGRRDYRRNLSTYAECLTSGNWPGFGQGVHLASLPNWAFNDE
complement(1246719..1246904)       phage membrane protein; NCTC12033_01186                                              N/A                 BordetellaaviumMIRRALAYLHAKRLDLDLAGYAAMVAALAMATGLIGPTLDAHPSTLTACEGCGKTAYAAKD
complement(1246901..1247188)       phage protein; NCTC12033_01187                                                       N/A                 BordetellaaviumMLHYPELTDQQIIDALYELFAGEADIAFGQDREWWADAIIDGGHDALCRIALTALSTTPVPEYVTQTQRELRADLIGIARLLMGKAHAEGREIHA
complement(1247278..1248024)       PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NCTC12033_01188; phage(gi31544021)     1.77e-42            BordetellaaviumMSQSALAFQPDSTAFNFESHVVRVVVINGEPWFIAADLCKALKLSNPSESLKALDDDEKMTLSSTEGHSGKRGGAQFQSVISESGMYTLVLRCRDAVKPGTLPHRFRKWVTAEVLPTIRKTGSYGTPRIDPAELLLSGQSDLTIELPEHIQAALNARAGVLAGEAFVLIREHLRRRIAFGAVNGHHQLLRDDLVLNLIADGDLGDALAHEYITKIRNLFSYLNGIADAACRSRDQAGEHLKALHTTHW
1248377..1248676                   PHAGE_Sodali_phiSG1_NC_007902: hypothetical protein; NCTC12033_01190; phage(gi89885983)     8.02e-15            BordetellaaviumMSIVTFDTLKFVETLEKAGVSREQASAMATAVKDSHEGAELATKADLRDVESKLIGETVDLRHEMNIRFAKVEGELTLLKWMLGLVIAGIASLILKAFF
complement(1248677..1248802)       phage protein; NCTC12033_01191                                                       N/A                 BordetellaaviumMTKINDGGPAFPRDERYLGHNRGDLRQRIERRLIDLAKDAA
complement(1248799..1249284)       PHAGE_Strept_Gilson_NC_048742: hypothetical protein; NCTC12033_01192; phage(gi100222)     1.99e-09            BordetellaaviumMTPSRKQVEAARPKFLEWLVARGAQVLRPTSEWELVRFDCASGVAIIYSNAKGSTTFTGQALAAWSAYKGAMAWDAGVRTKRAKVSPLIRTLLERDGDRCFFCHEHTSDDDRSAEHLVPVAHGGPNHISNLVLAHKACNARAGHLSAMEKIRIRDQSREQP
complement(1249281..1249565)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC12033_01193; phage(gi985757659)     2.24e-05            BordetellaaviumMTTKHTKGPWRYDYEPGYCGELIAADGSVVCVFTEEPGLDDAKVLAAAPDLLEALQETQSLLTAMLHEQRPQSEVEAQIAENRAAIAKATGGQP
complement(1249666..1249992)       phage protein; NCTC12033_01194                                                       N/A                 BordetellaaviumMQVTMQGGRVVVEPTPTSRRVPLGAGSTLCETLPLTETQRLQVIYRAIKLDGYAFGRHATEYLEDVFNHVVRADADTQALIALGVGVNRDEIRQRIEARLLELSERSQ
complement(1250630..1251421)       PHAGE_Entero_P1_NC_005856: SimC; NCTC12033_01195; phage(gi46401665)                  1.43e-05            BordetellaaviumMKLPRNQLGLALFGATLVLSPMAASAQEKVVSEFSAGKSHRYELSKLEYSVFKTLVDDDANNLASGNDSLLGERMGLTDTTASELAKAYSDNEVAADKRFKKKPLLINGKIGSINSGIGGAPYLALGTQPSSPHARLHKSALDFAASAKKGQSVSLICTGAGATITIPMLDDCRPARAVADEEATKLTRRVDRVLKGLGSDESAQQLLAISIYAASTIKGDSCGPNAAACLKNVKTAMKAPGAKEGILKAMETLKLAGISLAK
complement(1251713..1252540)       Uncharacterised protein; NCTC12033_01196                                             N/A                 BordetellaaviumMGQESPSIDFLYDFLYLDKPRAQSWLAQLVADGVPLSTKYQSSSTDSSKVNAAGGIPGVLKGGGSSVESVTETMERSFNTEWSIPLNLLDTLSEANYVSKGLNGAPIGSVIHIHGQANIIDISFMQAGWSAFTDLMLGQVKTTHSNKAAKAAEKTEVAQLGAALKVMPPMPQLYLSTVGGEVAWSVLHEDHMLIDPSALTLTYGANIKGDWHVLAVLDALPDGNDTPGTSIKIGKPISDGLLPVMEAIREAMGRPGDAYAVNPIAIFRAIKPSTR
complement(1252774..1253814)       PHAGE_Haemop_Aaphi23_NC_004827: putative CI protein; NCTC12033_01197; phage(gi31544010)     7.16e-12            BordetellaaviumMNDVELNEHRVARLAAAIDKLSRGNKTDFGRRLGYKDGAFVRQMLAGLRPVSEKTVRAIEDMPGMRSWFSTDEEPKPKDTDAAPPWPFPSIPEDKVRSLSPTQLSKLEGALALALGQMEIGLEVSRPSVSQAQKRGGLVNMDTAADEFSMRIPGLPPGPSQIKEPVPAYVTPRLSLAQATAVNVVAAEQHADNDEWESVPEMADVRLAAGEGIENHTEEMTGYVYFRRSFLRSVGADGQRGRMVYAKGDSMEPVIRDGAALLVVPDLGLTLHDLAAGGVYAINYDGKMLVKTVAKDRLTGRWVARSFNARHPDIPLEDGASVRVLGRVVWAGAQLGEDEQGQWVRR
1253951..1254169                   PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NCTC12033_01198; phage(gi428781783)     1.16e-05            BordetellaaviumMVELGFEVKSDAQIRQWRTRYMGRMPKPGYCVGLELATGGAVTRQDLRPADWHLIWPELANQSTPKQEASHA
complement(1254298..1254546)       Uncharacterised protein; NCTC12033_01199                                             N/A                 BordetellaaviumMSEKFNPVNVKSLTITPHLAHEAFPTVRVDIPLEHTQSLGTETISLSLLLPLEKQDWTEVQRKAVERAIAILQSALAHDQQR
complement(1254617..1254781)       Uncharacterised protein; NCTC12033_01200                                             N/A                 BordetellaaviumMSETEKLLNAAADMAKRRFIDPSESAVMDLFRELCAERERTAYDEPEHVGATLH
1254868..1255260                   PHAGE_Burkho_AP3_NC_047752: DNA adenine methyltransferase; NCTC12033_01201; phage(gi100041)     1.54e-05            BordetellaaviumMNAPEIPILPASTEEGETLLRKALANMTKAQKLEIMKECGWKDESSITQIINGTVGIKIWQLDAILKVFGMALVEQWYMDYLARGNSIGANCCRARLSQGRAGRIDGQTGLCPLARCCAPQCCPSLLDRP
1255271..1255594                   PHAGE_Escher_SH2026Stx1_NC_049919: holin; NCTC12033_01202; phage(gi100034)           9.91e-20            BordetellaaviumMEIKPRTRTLAQNDMMWSILTDISRQVDFVVNGALVKVEPEEVKDILTASLRRETRMAMGIDGGMVLLGQRTSKMTVRQMADVIDLAYAFGNEKGVHWSPTSLGRGA
1255627..1256112                   PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: capsid decoration protein; NCTC12033_01203; phage(gi100066)     5.30e-06            BordetellaaviumMKRTKADRGEGLGRKVEIVMGYYRPPGHKIPSLLRSEEHRRRVAKMKCANCGRNGPCQVAHANITKGMGLKACDSLVFPLCPACHRHHDQGGIPKEERWRREWVYLDGVRADLMKAAQWSPELELHFRNAIEPLCRLVNGDAEKEKAAGKSGLGTALMEKF
1256112..1256942                   PHAGE_Ralsto_RSK1_NC_022915: putative replication protein; NCTC12033_01204; phage(gi560186069)     2.71e-57            BordetellaaviumMARARNIKPSFFANDDLADINPLGRLLFIGLWTMADREGRLEDRPRRIKAEVLPYDDCDVDSLLQDLSKHGFILRYEVGGDRFIQVRNFTKHQNPHIKESASQIPAPVQHCASTMQEQCEKHPEPEPAGLIPDSGFLNPESKEIPPNPPSPGGDEPGLPSAGKPKRERKVRCTLKTFIDQCREAGETAISGYQPLLEYVDGTGLPMDFVQLAWEVFKGEHLAGGANERRLQADWRRHFLNYVTKGYYRLWYATAEGNFSLTTVGIQAKKIHLKEAA
1257207..1257440                   Uncharacterised protein; NCTC12033_01205                                             N/A                 BordetellaaviumMRLGVVLDLHDDDFRPEAVDDDSISWGGKLKEGPADASLTADIVLHRGVVLKNLFGTTKGATFNAVLAATQGQTDGN
1257430..1258824                   PHAGE_Escher_RCS47_NC_042128: hypothetical protein; NCTC12033_01206; phage(gi100087)     1.49e-122           BordetellaaviumMATDESCALSYSSDAEQCVLGGLLLDNRAWERLDGLLTADDFYRHDHRLIFSAASGLLDRGLPADPVTVFEALSAAGNSEAAGGFAYLDAITHSVPSAANVRRYGEIVRAHRIRRSVAELGSDISTLAAESGAEPEALVEQATSMVMALADSRVAGREPVEIGDLLTGVLDSIEARQDREGGLSGLSTGYADLDHKTSGLQAGDLIIVAGRPSMGKTTLAVNIAENVAIAGGVALVVSLEMDAKQLAERSVARFGEIDTQRIRSGRLSPDDYTRLTGALGRLQDQRLVIADDPGMASVARIRLAARKVRQRQGKLDLIVIDYLQLMRGEGGNRNEELGGITRSLKLLAREMSCPVILLSQLSRKVEERPDKRPIMSDLRESGAIEQDADVILMAYRDDYYNPDSAFKGLAEVLIRKQRMGPLGEVFLVFQGQHSRFLDADHQTVAQAKNSQPTRPAARYSALRD
1258825..1259202                   PHAGE_Sulfit_NYA_2014a_NC_027299: Rus-A like endodeoxyribonuclease; NCTC12033_01207; phage(gi848469692)     4.41e-10            BordetellaaviumMEQIQIELSWPPKELSPNFRGHWASISRAKKVYRIAACLTTMRALRHAESFDRLGGVRITYEFCPPTARAYDRDNLAARMKAATDGISDALGMNDRGFHFAPVVLGAKEKGGLVRVTIESLKEGV
1259199..1259357                   Uncharacterised protein; NCTC12033_01208                                             N/A                 BordetellaaviumMTIIQKPRARQERGMWLVWCAHIGPSPRATFDEAYRAWATRRGINHSNIGAA
1259357..1259689                   phage protein; NCTC12033_01209                                                       N/A                 BordetellaaviumMGHPRTVEQSDRYWRQAAVERLRGMGIKLNRFRQNAEGVASEIRRIEPAYRGGDPNLVIRAWMGAAAAPKVEVQRRIYTPSAAMRFAALRSQQAEPSLKALGSPSVRSYP
1259689..1260090                   phage protein; NCTC12033_01210                                                       N/A                 BordetellaaviumMRRTAADSAIPRWVEDELHNWARSQWEGEWPGPGRPDHGAPVVCEFPRQPDDEGSDGLIPICYDRAHKVHALYEALPLIERRVIQAEYTRRREYGDMTIKERQEAASQLIGIPAAYYKIALGSFKIQVWRMFE
complement(1260745..1261023)       PHAGE_Burkho_phiE202_NC_009234: gp7, pANL12; NCTC12033_01211; phage(gi134288781)     6.10e-12            BordetellaaviumMPKLKPGTVVPTREEDEAINRGIAADPDTYELSAADLKQMKRMGRPKAEVTKERITIRLSPDVLESFRATGAGWQTRVDAALRDWLKTHAPS
complement(1261010..1261276)       PHAGE_Burkho_phiE202_NC_009234: gp6, pANL56; NCTC12033_01212; phage(gi134288760)     1.99e-11            BordetellaaviumMNITFDPAKDQSNQRKHGVSLAAAEAFEWDGALVREDMRREYGESRMIALGYIDVRLYCVVYVDRNNERRIISLRKANSREVNLYAQA
1261467..1261973                   PHAGE_Entero_phi80_NC_021190: phage regulatory protein Rha; NCTC12033_01213; phage(gi824479639)     3.06e-36            BordetellaaviumMDLTQVQDMVSLAGDRLVTDSRRVAERFKKRHRDVLRAIRLLECSADFRARNFAQCFEINGLANGKPEPVVQMTKDGFMFLVMGFTGRAAAAVKESFIEAFNSMAEYIRSGREGLWQQMHALLATDADSKARASLGSRLMLDRKREKPVLEQRCADLMARIQHPLRLA
1262048..1262416                   Uncharacterised protein; NCTC12033_01214                                             N/A                 BordetellaaviumMDSLSLVGVASEMHFDLFDDGIDLPTEEIEALWHTAADRAQMKIEGDDLPIVLVYMALANFSDAMAERLGRKVGDADFAFQWASGLPNFDRGCRDLAIFTAHAMADMKDAGDQLAALRQVIH
1262454..1262888                   PHAGE_Erwini_phiEt88_NC_015295: phage terminase, small subunit; NCTC12033_01215; phage(gi327198562)     1.19e-54            BordetellaaviumMALTPKQEAFALAYVETGNASEAYRRAYSAERMKPETVNRTAKDLLDNRKIAARVAEIQAAHVERHKLTVDDLLAELEEARQAALSAETAQSSAAVAATMGKAKLLGLDKQVIEHSGPGGGPIATVTVSPEELRKAVQSVQDKF
1262953..1264290                   PHAGE_Acinet_YMC11/11/R3177_NC_041866: minor tail protein; NCTC12033_01216; phage(gi100056)     0.0                 BordetellaaviumMFLQRKGYLWQKAAHHKLICDALMRVYQGKTKRLIINVPPRYSKTELAVVNFIAWCFGRSPDCEFIHASYSSALAVNNSANVRGVIQHEAYAEVFPGVALASDAQHHWKTEQGGVMYATGAGGTITGFGAGKLRDGFGGAIIIDDPHKADEANSGVMRKNVIDWFQNTVESRKNSPDTPIIIIMQRLHEEDLAGWLLGDRGPNGRGDPVAGGNGEVWDHLCLSAWNDDGTPLWPEKHSAEDLARMEKAAPYVFAGQYRQTPTPPSGGTIQPDIMPVVDAVPAGGVSWVRGWDLGASTSGDFTAGVKIGKLSDGRFIIADCRREQYETNKRDALIKNTADGDGMNKVRQSLPQDPGQAGKSQVVAFTKLLAGHSVRFSPESGDKVTRATPLASQINAGNVLLLRGEWNRAFTEECRYFPFGKYDDQVDAASRAFNELNAMKRGFFG
1264287..1265762                   PHAGE_Pseudo_LBL3_NC_011165: putative structural protein; NCTC12033_01217; phage(gi197261344)     4.27e-125           BordetellaaviumMKLPKFFKRKPAAEAAKPAKRRGLPEHPLGKKVRNLFVMPEFVQPHGAPGVSSDSADIGPAPSPKPGMSIGANEAQLGFFAVGSHFIGYQVCAMLATNWLIDKACGMPARDAVRKGYLLTCGSDEVSESLRDSDGRFKVTQNLREMIHFGRVYGGRIVLFEVRTENPDEYYKNPFNLDGVAPGSYMGMSQIDPNWVAPELTEDNLSDPASQSYYEPTYWRIKDRVYHKSHLRIFVPYPVPDFLKPTYRFMGVSVPQRMMERAYCAERSANEGPQLLMTKRLTSVGVSDDALANREKLEESLAAWASIRDNYGVKVGGADETIQQFDTALGDVDAVIMTQYQLSASVANVPATKLLGTQPKGFNATGDYEHAVYREDLESIQANDMSPLLERHYALVAKSHSIDLPSKISIQWLPLDSPTGKESAEIEKIKADRDAVLIGTGAIDAADIRERVRNDRDNDYHNIEAAEFTDGEENANQTPPAVGPGAPGAAI
1265707..1266555                   PHAGE_Burkho_BcepB1A_NC_005886: gp27; NCTC12033_01218; phage(gi48697516)             5.64e-53            BordetellaaviumMLTKRRQQWGQERQAQQFKGAALAHPLSAELQYRERMSRLIAEMIEEYGRELKRLYAKNPEITQDASPTTYATRLLASLGKKWSREFGSRAGSIVDQFLGRVDRFAKQNLAASLREMSGGLTIKTPQMPANLAVKMQASTAENVGLIKSIPAKFQERIQGIVLRSIQSGGQGTATIFEEIQKLGQVTKDRARLIAVDQTRKVSTAINNERMKSAGVRQFEWIHSGGGFEPRSLHVEYDGQVFDMDNPPIIDKTTGERGLPGQLINCKCRMRPVIDFSGYLNE
1266548..1267798                   PHAGE_Burkho_BcepB1A_NC_005886: gp26; NCTC12033_01219; phage(gi48697515)             2.09e-48            BordetellaaviumMSNRQTDVNGFLLVRDNPITKVGVFPYLGREIGASDPDRIYQVYRPQEELEKPETIASANLVPWIDEHEFLGKDGTPAEKKGVQGTTGETARFEYPYLRNSIKVYSEFMKDLIDRGKVELSPSYRCRYEFTEGTFDGKRYHAIQRDLRFNHLATVKEGRTGPDLAVQDCLTITYDSAEFINMELTPENIQQIRELIVQALAEKAPAGSDDDPEADPTKKPEYETPDAVTPEAQSAAEQTAASAEQATQAVAAAQEAVTEAQAAVEEVQAAAEEVQAAPTADSIAKLRSAQARLAGIQTKHSKAAADAATAVIKRAQAKPAAPVTSADAIVKQIAERDKLAQRVTPHIGVFDHSSMASAQEVATYAAKKLGLSVTSDSALHVLNGYLQGAKPDSEKRVSDSKTGSATNTAAKLWGSE
1267801..1268268                   PHAGE_Burkho_BcepB1A_NC_005886: gp24; NCTC12033_01220; phage(gi48697514)             2.03e-10            BordetellaaviumMTIPYQARSVLISGLPGNLSHDGPTRAIAAVINSADESKNLFGRAFTHKAGTDTVQVGGAGVFAGILISPKTYAVDVAYARNASVGEFLSMGEVYVELANAGKVGDPVSFGADGTISAGTAGTQIPGAYIARHAPSAETPRLAVIALNGQVNAPA
1268284..1269363                   PHAGE_Xantho_Carpasina_NC_047962: hypothetical protein; NCTC12033_01221; phage(gi100010)     1.98e-67            BordetellaaviumMAKTQSAVHMHMTGSLAVKRGPVKLTRDSQVGFEELGHLGIGIRAMDSALTGPAANNGVMFAHMLQTWLPGTVRVVTQIRNIDEIAGITTVGSWSDDTINVRVAEPAANAELYGDTTNIPLADYRQSIESRGLVRFEQGFSVGKLEEERQGRIGYQTADEKRKASAESLDISRNQVGFYGFRDPETNVYGLLNDPSLPPYSTAAKPWLTATFDELVTEFTQMINTLESQFGGNFQDSMTLKLVLPLGYRAIFSKYSPAASGMTFRQWLTENFPKLNIVTTPEFKGANGGLDVVYLFVENAGDADESDITGASLIQAVPVRYQVLGSENRIKGYIEDAINATAGIFVLRPWAFARRTISA
1269473..1269814                   PHAGE_Burkho_BcepB1A_NC_005886: gp22; NCTC12033_01222; phage(gi48697512)             7.47e-14            BordetellaaviumMSIYIYSTLSADQLYALADGRNIKINGGANVADKRLVTPKGKVTRIEENDFELLQQNIIFQAHAKNGFVTADHGQSDPERFAEKNLEAADKGAQDTAATVQKRNPKAAAPKAE
1269816..1270241                   PHAGE_Burkho_BcepB1A_NC_005886: gp21; NCTC12033_01223; phage(gi48697511)             1.32e-22            BordetellaaviumMTFPLTQFRAIFPAFASVTDEVVIAVADWGQCYVSSHGCDCNDKLWMLVTAHLLQLRANAEVGNSAPGALASATIDKVSVSFQAPPAGSSWAHWLNQTPYGQQFQALSRACSAGGMYVGGLPERAAFRNVGGLSVRGGRVR
1270238..1270714                   PHAGE_Burkho_BcepB1A_NC_005886: gp20; NCTC12033_01224; phage(gi48697510)             2.33e-20            BordetellaaviumMKTKSAGGTERLKRALAEVSAKSVQVGFFDTAQYPDGTPVAYVAAIQEFGYPQGNIPARPFMRPTVKARELPWAKQVAGVMMGVIKGEVTAQHGFEQVGALAAGDIARAISKVVSPPLEKSTLQARQSRKKTPGVSKKPLVDTGLMIQSVTYQVEEKS
1270711..1271094                   PHAGE_Serrat_MyoSmar_NC_048800: hypothetical protein; NCTC12033_01225; phage(gi100148)     1.38e-17            BordetellaaviumMIPGINLLGLAASVIQMQSVGLLRFKARFQNARGQHINEYYPVETIQGSWQPASESTIRNLGLDASQRYFNLYTARDISGVQRGAAPDLLVLGGKRYDVIGVTDWHALDGWKGILCVEAGPYDPERA
1271075..1271602                   PHAGE_Serrat_MyoSmar_NC_048800: hypothetical protein; NCTC12033_01226; phage(gi100146)     1.05e-09            BordetellaaviumMTQKELEAAVRLALIDLLREQGVTLPVLAAFEPSKQGRVDDGVYFFPVGTGQHGWQSRKYLDHAHGLVAKETQIDAPMYQFQAFVMDDVRNDAQLLASDVVALVRGLIQSMRFLQRMSAVGVGVQRPSEILQPSFLNERDDFEFNPNFTVIFTHKRSITQETPHVTRVQSSIHRL
1271611..1273119                   PHAGE_Escher_FEC19_NC_048073: capsid maturation protease; NCTC12033_01227; phage(gi100067)     7.26e-90            BordetellaaviumMSIKMSRYVRIISSVSGANAVAQRQLVGRRFTTDPRVPVGKIISVKPGGAEDYFGSGSPEAAFALQYFSYISPAPASQAPELQFAAYPDVARPGRVYGYRSATTLQEFKEVLSGNLSVNVGENAYVLTGINLSAATSLTNVAQLVTAAIAAAANEQSGQSATVSYDALTGAFTVVSAVAGPGAVSIQKAAAPDIGDLMALQGPQAIQSPGSAALSPLEAFRAAENVTDSFGSASFGAAVALADALPLAEYVSGENVKYQMYWPVSATTADQWSAALLSTASNGLILNGTAGEYKESIPMAVLAATDYTRVNATINYMFRQPGVTMTADVSTDPMADFYDARRVNYYGQTANAGQSLSFFQRGYLMGGATAPLDMSVHANEQWLKAYLTSEIMSLFLTVGRIPANNDGKGMVMSLVQGGVDKGLRNGTVVVGKTLTALQKVAIGQMTNDPLAWHDVKNKGYWHTADVTQSTDESGATEYAVKYLLVYSKGDMIRKVEGSHNLI
1273179..1273640                   PHAGE_Serrat_MyoSmar_NC_048800: hypothetical protein; NCTC12033_01228; phage(gi100138)     1.16e-37            BordetellaaviumMHDVSAIGVALRCTASVSFPSGFTVTAFADDADPFDLPAIDIATPAMNVNGDLVVFSAPVPVTITLNVIPGSEDDENLAVIFDANRPGKNKRHAGDVITLVGTYPDGSTITLSEGKMTNGMPGSSPASAGRIKSKAYAFAFQNIARTRAASAA
1273652..1274077                   PHAGE_Burkho_BcepB1A_NC_005886: gp15 E; NCTC12033_01229; phage(gi48697505)           5.65e-31            BordetellaaviumMADLIKPRSVMIADRDGVEKEFIISRLPATAAREVIAKYPLSNIPKLGDYATSEEVMKKLMSYVAVNVDGRELRLTTQALIDNHVVDGIQLLKLEVEMIEENTGFFGRGGQRGFLDCLLEKLLQSAMPMLTRFLEPSSARD
1274198..1275811                   PHAGE_Burkho_BcepB1A_NC_005886: gp14 T; NCTC12033_01230; phage(gi72257065)           1.16e-24            BordetellaaviumMLLDALTYIIDADNSKLDKAVDKSKQKTDEFGKSMLTAEGRAQIMEDKIKGAFTRIGGAIIAAVAASKALQATAERAQFLEQIRATSEAAGVAVGDVDALGRSVELLGGTSEGARSALEGLASTAYAAMQDVNSSQAKAFKDLKVSLKTTDGQIKSTMQLMGDLADAVKGKDRRKADSLLAGAGITDKATIDLIYKGRQELDRLMRSQKEQGVASKESVERAQRYTEAMISLKQNTGAVRDAFSDMLLPVLTWVIEKFDVFVSWFRRHETFVKGFFIGVSTVLAVMFAPAAWAAATAVWALIAPILAVALPIAALVTLFALLYDDVMNFLDGNDSLIGQISEDYPAIGETVKAMAEAIKTAFGWILEAVNFAWGAIGAFAKNAVQAFGTMGKSISSIFESIVAVVKNAWAYIGKVFENVSGVIKKIGKWLGFGGGDDIEVTQTAVSKGLDGAEAQANENMRAAQAQLNQAAASPVNSVTSNAISNTAASRTETNVQVGQVTVQTQATDAQGISKDIGGELKDQLKNVQADSASGVAR
1275808..1276359                   PHAGE_Burkho_BcepB1A_NC_005886: gp13; NCTC12033_01231; phage(gi48697561)             3.17e-17            BordetellaaviumMIRLNDSLSTSTQERVSVLDANTLEVLFQAASPMRVSVKESKRATKFAVEDGTERSDHVVRELIEVQIDFVLTADVRNAFQSLRQAHEQNKLVSVQTKVRLYENLLITDIPHDETPELGMAIAVPVRLQEFLQVKPEYGTLPPEKVAKKNQSSTVQRGQQTGSEREESSILGRGARGARKWFS
1276347..1276658                   PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; NCTC12033_01232; phage(gi725950182)     4.34e-17            BordetellaaviumMVQLDLIRAPNQAFSVVIDGVLWELAIKTARAVMCADITRDGEVLVQGQRIIADAPILPYRHLSLRGNFAILTRDDDLPWWEEFGRSQSLVYLTAAEVGINDD
1276648..1277475                   PHAGE_Burkho_BcepB1A_NC_005886: gp11; NCTC12033_01233; phage(gi48697559)             8.96e-52            BordetellaaviumMTIDLRAIRVGIEVSGRMHYYSATDGMRIKASGTKFANATQNECTVTISNLKRETRDFLLTETSPYNKNRKPKRLVVEVGRVSTGLFRIYVGDITSAEPSSPPDVDIVLKSKTGNASSGDVVSKSAQALSKLSQIAAGIASDVGATLDFQALDKLIANYTYTGGALGQINRLAEAGGVRAFLDDDRLIVQDFGKATAGRVKVLNLNSGLVGIPKANDKGVDVTYLIDGESVLGGKLILESKFNRALNGSYKVDQLKFDVASHEDPFFYTALCSRL
1277460..1278167                   PHAGE_Burkho_BcepB1A_NC_005886: gp10 V; NCTC12033_01234; phage(gi48697558)           9.87e-47            BordetellaaviumMQQTVSPNIDPADEGSLAGVLKSWLKGYIREHHDDMLPATVVSYDDAINRAVVRPLIMVGTTDGRKISRGAIPNIPVFRFGGGGFFVRFPIKPGDFGWIKANDRDVSLMFQRGGQEDWPNTERLHSFSDAMFFPDTLKDWAIDGENSDALVIQSMTGAVCVSLHEGELRFKAPKAKVEIPDTEWIGNLAIKGNVSTSGGNVDMSGGSLRHNGKNIGSDHSHTGVQRGNDSTGGPA
1278164..1278508                   PHAGE_Burkho_BcepB1A_NC_005886: gp09; NCTC12033_01235; phage(gi48697557)             1.33e-11            BordetellaaviumMITFKTGDNNDFVVLPNGNLALETGIDAVAQEARHFAATAKREMIHAFDQGIPFLREAFSKQPNLAQFEAALRRRLLELDEVDEVQSLDVAIDGESLKYTAVLNTAYGVVTLDG
1278501..1279691                   PHAGE_Burkho_BcepB1A_NC_005886: gp08 W; NCTC12033_01236; phage(gi48697556)           3.62e-91            BordetellaaviumMADYKFISSRGVVIADTADTRAQVESEFRAVFGDDMPTDPATPQGKLITRIVEERDAIARNNAELANQINPAQAGGVFLDSLVALTGGRRRSSIRSLLTGVNLSGVPGTTVPVGSLAETTSGEQFALVSPVVLNAQGIAKGNFRATLDGAIAVPPGALNSVASSVLGWERVENPTAATIGQLQETDVALRRRRAKTLALQTTSINEAIVSRLYDIESVQSCYYLENYSDQDTVIDGIPMRKHSIWACVRGGTDAEVAAALFETKTVGGGYNGAVAVTVSDPNNGRPYEVRFDRPVDVPIFIRVTARDSSLDLQALIPDLVMRYVNGEVEGDVSFVVGSDVSTFEIAGAIRQQEPSIMVIKVEWSVVGSGVWSADTLKIPPNKIAITQRSSVQVVIA
1279688..1280338                   PHAGE_Burkho_BcepB1A_NC_005886: gp07; NCTC12033_01237; phage(gi48697555)             2.17e-48            BordetellaaviumMSGVQEFDFSVDLLASILWQYEGAPMAVQLARNDQAWIDASQTKFWHDWRQDVFDLDTANEFGLSVWARILGVSIEVSERRRVDGVFGFGVSNRNFDNGNFGTARDGDTRLDKESARKLLKLRWFQLTMRPTVPNINKAIEDVFGPGAAFVVDSYDMSIVTFMFSAAPDYRLRRLLERTDILPRPSTVGVAWQVQTRPAWGFGPNHLNFENGSFGA
1280341..1281489                   PHAGE_Burkho_BcepB1A_NC_005886: gp05 H; NCTC12033_01238; phage(gi48697553)           1.01e-10            BordetellaaviumMAKIFNRPFATTGDREDLPVSDQPDGKASWDAGWTPDYELPSDNPNSRPVGRQEMNGVLHGVTEALGELQLFGFAKWQAVVGGWPLGAMAYHGGAVYKSTDGANTTQPGSPGAKWELAFWHSAALTGNPTAPTQAPGNVSTRIATTEFVAQELTRAIKDIPGVVRRVYTSNATWKKPAGLKSALVQVQGGGGGGGGTISTTATNRAVIGAGGGAGGYVEALISADALPAEVLVTHGASGGGGAVSGSGAAGGASSFGAILTASGGGGGGAGQVQQAAVTRGLAAGGVAGATSASAIGALSYGGESGGIGFSFAAAGAGISGNGGSSHLGVGGPSVAEGSPGLNASGYGAGGSGGCSGSPSGSDSGRPGGSGSPGVVIVTEYY
1281489..1281659                   phage protein; NCTC12033_01239                                                       N/A                 BordetellaaviumMAKYALVEPLGRVAQVGATPFPVAALFHWIECGDDVEAEWTYVAGTFRPPVKTQAQ
1281728..1281982                   PHAGE_Pseudo_F116_NC_006552: holin; NCTC12033_01240; phage(gi56692925)               2.91e-15            BordetellaaviumMPQQRKEKMKLEDAAITAANRATEAGAATGVLGWATQVNWIGWAGVVIALGGLFANLFYQRRRDRREKTEHEARMESIRAGCER
1281979..1282521                   PHAGE_Rhodob_RcRhea_NC_028954: lysozyme; NCTC12033_01241; phage(gi971760165)         1.54e-09            BordetellaaviumMSKWARAGAATAAGLVASGALALLSPDLERMLSRWEGEGQHVVYADKLVGGLPTVCRGLTKHTVKEPLVVGDYWSPEKCAEVEKAIVEGTQIELASCLPAAIRQGAFDAASDMGHHFGNPRVCASRAVGLMWAGKWREACDAFAHAPDGRPVWSYVGDKFYRGLYNRALDRRRLCLSDLQ
1282500..1282886                   Uncharacterised protein; NCTC12033_01242                                             N/A                 BordetellaaviumMPVRFAVIAMVLIAALAAGAAWMAQGWRKDAVIADLRLDRAEADLSVMRQALATTEADIKKMAEAARAAARTAPALTAQMKEISKALENANPLPAGCRPDADRVRGLTDAVRAANRAAAGQSVGDALP
complement(1283213..1283581)       Uncharacterised protein; NCTC12033_01243                                             N/A                 BordetellaaviumMSTDGKSEFDNLIDDSLKESERSVSQDKAMAQLSASLEKERDQRREERFLFVAIIVVLVDGYLFSKMPGWAGQIVIGLIQVFGLTVYARHCGVQEVERIIDKLLSFSPFHRKKSENLEHKTD
complement(1283578..1284033)       PHAGE_Burkho_phi52237_NC_007145: hypothetical protein; NCTC12033_01244; phage(gi117676333)     3.74e-12            BordetellaaviumMSVTALEAAKYACRASDWTLTNLQLQKILYIAHMIHLGRTGRPLIHDEMFEAWDYGPVLPSVYRRASSFGADTVKDVFHSVQDLEPFLDSEEMDTLNEAVDKLRNVPAFRLVEMVHDERGAWGRVYDPYFRNLIIPDELIANEYKERFGNR
complement(1284423..1284707)       phage protein; NCTC12033_01245                                                       N/A                 BordetellaaviumMKGFRNYTPPDIDDLARLKESLGLTGNQLADLAGVSDGRQWRKYTGGASPREMNPTMLFLLAARLSLSDEQIETVLEKMREIGADFEFAEPLRD
complement(1284750..1284914)       phage protein; NCTC12033_01246                                                       N/A                 BordetellaaviumMEKQMTEAQLAKIQAEISKLMAETVKINAEARWYPLVIGAALATAVVTLTKLFL
1285265..1285311                   attR                                                                                 N/A                 GACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
1285533..1285961                   Glyoxalase-like domain; NCTC12033_01247                                              N/A                 BordetellaaviumMAFRGAKLVPELLVRDISASLGFWVDTCGFSVAYERRDEGFVYLDLDGAQIMLEELGHGRNWITSMLDAPLGRGVNFQVAVSDVQPLLVRLRASGCSLFMEPEDKWYRRGGVESGVRQFLVQDPDGYLIRFQASLGSRSVSG
1286112..1286321                   PHAGE_Lactoc_bIL312_NC_002671: Csp; NCTC12033_01248; phage(gi13095918)               7.50e-16            BordetellaaviumMKTETGVVKWFNSEKGFGFIAPESGGKDLFAHFSEIVGTGFKSLEENQRVSFVEGMGPKGPCATKIEVI

#### region 3 ####
1388600..1390375                   PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; NCTC12033_01346; phage(gi9630145)     5.33e-22            BordetellaaviumMIPGVREATAGHEPVKAELWKRIYSRVGSHWKGLILAVLLMAGAAATQPTLAVIMKPLIDGGFAGDKPQYIWSVPLAVIGLILLRGVCNFFSDYLLAWVANNVLLGIRREMFDRLLGLPDADFKRGDTGRLLNRFTIDAGNVTGYATDVITVLVRETLVVISLIAVLLYMSWLLTVIILVVMPISVWIARSFARRLRRINRETVNMNAELTRVVSEGIDGQRVIKLFDGYEAERGRFAYVNARLRRFAMRTAVADAALTPLTQVCIAVAVGAVIAVALGQANAGTLTAGAFAAFMSALAQIFDPIKRLTNLASKMQKMLVSAESVFTLVDQIPEVDEGQRTLAEPVRGKIEFRQIGHRFPEADRNTISDVSFTVEPGQTVALVGRSGSGKTTLVNMLPRFVLPTEGSILIDDVPINDVQLNSLRSHLSLVSQDVVLFDDTIAANVGYGALGKADDQRIHDALAAANLRDFVDSLPKGIHTPVGENAARLSGGQRQRLAIARALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLAAGGLYATLYNMQFRED
complement(1390510..1390773)       PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; NCTC12033_01347; phage(gi48697217)     3.21e-06            BordetellaaviumMQPTQKLIYRVSDVRKALGVSTATIYRMCLRGELVKGKIGTTRSVGITAESVEAMAARMGLRAASAEHALDQMGSQVGSHAKTHAQN
complement(1390794..1391123)       phage protein; NCTC12033_01348                                                       N/A                 BordetellaaviumMTPNTKQTVLTDPLRAAIQFLTEEADELRECCTMHSEDWADEPEAKAAYDRILAVVAGLEAMRQEGAKGAIGISIANLAESPQVNSLEFGGIKPKQHPAPTGIVADEYC
complement(1391120..1392154)       PHAGE_Burkho_BcepC6B_NC_005887: putative methyl transferase protein; NCTC12033_01349; phage(gi48697223)     1.44e-118           BordetellaaviumMAAPAAYYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLRGYTQAHWFAGIGVWSLALRRAGWPDDRPVWTGSCPCQPFSAAGKGIAFDDERHLWPAFFHLIQECRPPVLFGEQVASKDADSWIDLVQADLEGVGYAVGAVPFPSASIGAPHIRDRLYWLANAAGQGLQGRELVGKRVRSQLAAAQRSGTAGGLAHADHDRRAAPSFDQGDDAKHHAQSCGEPGGMERPLHIGRQRRETAASGYHNDRKTSERSQGEHGLGVTGSHRLSQHQAGPVNGFWRASDWLLCRDGKWRPVEPGTSPLAHGAAARVGRLRAYGNAINAVQAQIFVEESMRCL
complement(1392158..1392658)       PHAGE_Gordon_Nymphadora_NC_031061: capsid maturation protease; NCTC12033_01350; phage(gi100067)     8.46e-66            BordetellaaviumMMDATVLDPCCGGRMMWFDRQDQRALFGDIRSEQHTLCDGRAFNITPDLNMDFRAIPFANDTFALVVFDPPHLRRAGVDSWLRAKYGILTNDWRDDLRRGLAECFRVLRPEGVLIFKWAEVQIPVSQILALTDHRPLFGHKSGKREKTHWLTFLKPAAPSIQGEGR
complement(1392659..1393519)       PHAGE_Achrom_phiAxp_2_NC_029106: hypothetical protein; NCTC12033_01351; phage(gi985770140)     8.95e-06            BordetellaaviumMTNQAWQPIATAPKNQLVMVYTPPQPSDWPDSVRIGFDYIDPEVADDYWYNHGEHYEHYCCVAKPENCTGPGERAPYTHWMPIPPAPGADTEASVQLSGNSGELDESLRFSAQRILDAAFHWAEQRQIGPAQAKSAWVGLERHVLMQLRSQRDDRARRPAPPAAHERAPVGDERAAFEAWATAKKMPLTLIGEQYDDFWVDHAWNGWKARAALASAHAADARDAAIEAVRLQVCKLQRYSFLLNKSGGVHRANDRSGNWVEFDAVHELFDPVSVDAAIAAQQGEGG
complement(1393516..1394019)       Uncharacterised protein; NCTC12033_01352                                             N/A                 BordetellaaviumMTPAPLNRQQRRQMERQQARQRAQRRVERPVHIPMMVKAQYTLEPLEAVIDQIERTGAVDTDQRGTPIFFCNSDGGWYESASAIDGMADFFDMWAIRHARTLDVTPLRQLAARLSAGMLLDAPLMTAVRHLLPILRRVASTLDRDEAIDLLRGTQINEARQKLEQRA
complement(1394101..1394622)       Uncharacterised protein; NCTC12033_01353                                             N/A                 BordetellaaviumMFSLDSQKVTLAHLNVRPENHGDEKVGGADLKIAFTESNGLLAMFHPVLRDALYRKEETPPNQEEIFQGSPADQLTVRKFGDLICPLRLKYELKGASVVIGFGLGGASNIDFETADVDHFSVELMEGGSARYGFRVKCNPTGEQIKRLYEVLGGEVDITVTPAVDKQGSLLND
complement(1394708..1395724)       PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_01354; phage(gi100029)     5.29e-162           BordetellaaviumMSQTTSLADLKKTSKMVASQAGIGQVKAFFDSQKSTLAAVLPRHVSADRMLKIALGALRTTPKLMGCTVESLMGAVVQCSQLGLEPNTPLGHAYLIPFEKRRKQGNDWVTDKIEVQIVLGYKGLIDLARRSGQIVSIAAHAVHENDHFEYAYGLDEKLEHKPAMGERGAIIAFYAVAKLVGGGHAFEVMSEQQIIEIRNASQGWQQAVRAKKTDASPWGAHFAEMGRKTVLRRLFKYLPVSIELANAAALDELNARGESQALDSVLEGEYITPAPGDDDAAHPAIAYDPSPLFQQIADAANLDALDLVGDSLRDVPDEHYDALQRAYQNRRAELTPAD
complement(1395736..1396590)       PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_01355; phage(gi100028)     4.02e-105           BordetellaaviumMNAITEATRLIDAPCVIEGQPIEQYHGGPGISKTGLDRINVSPANFYDLTMNPARPPEPERKGQLEGQLAHCAILEPEKFATRYAVGPDVIRSTKEWKAFEAALPAGVIGIKPDQRETAMRQAEAVRRLPDVAEALAAGVAESSAYWIDQETGVLCRCRPDWCHPAGESGVILLDVKTFSDASPHEFSRQIARKRYHVQDAFYTDGYAAASGTTVLAFIFVAVQDAWPFAASAVMLDPRSQDQGRRDYRRNLVTYADCLTSGNWPGFGQGIHLASLPNWAFNDE
complement(1396587..1397039)       Uncharacterised protein; NCTC12033_01356                                             N/A                 BordetellaaviumMNAITINIDDYLTAEEKRQIAREEFRSACARRSAEEFERILSNAAYDLVHKEVDAAFSGDMVETVRTQAMKVINSMSSHTVFSPPNAWDRAPSKGYLYLQEAIEAARPAVAERVLAIIDTMSAIDLRERIEDLVCDAIIGKLTAPSKVAT
complement(1397043..1397237)       phage protein; NCTC12033_01357                                                       N/A                 BordetellaaviumMTRRLSTLWRRARRTGQDLDYVGYLSGLIGALALLIATSVIGPTLDANDQIANDGRKTAYAAKD
complement(1397234..1397719)       PHAGE_Strept_Gilson_NC_048742: hypothetical protein; NCTC12033_01358; phage(gi100222)     1.12e-09            BordetellaaviumMTPSRKQVEAARPKFLEWLVARGAQVLRPTSEWELVRFDCASGVAIIYSNAKGSTTFTGQALAAWSAYKGAMPWDAGVRTKRAKVSPLIRTLLERDGDRCFFCHGHTSDDDRSAEHLVPVAHGGPNHISNLVLAHRACNARAGHLSAMEKIRIRDQSREQP
complement(1397716..1398000)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; NCTC12033_01359; phage(gi985757659)     2.24e-05            BordetellaaviumMTTKHTKGPWRYDYEPGYCGELIAADGSVVCVFTEEPGLDDAKVLAAAPDLLEALQETQSLLTAMLHEQRPQSEVEAQIAENRAAIAKATGGQP
complement(1398101..1398427)       phage protein; NCTC12033_01360                                                       N/A                 BordetellaaviumMQVTMQGGRVVVEPTPTSRRVPLGAGSTLCETLPLTQAQRLQAIYEAIKINGYAFGHHATEYLEDAFNHIVRTDADTQALIALGVGVNRDEIRQRIEARLLELSERSQ
complement(1398849..1399124)       Uncharacterised protein; NCTC12033_01361                                             N/A                 BordetellaaviumMSKISMPEPVAWMTHHDEPMIFLSAIECAHYCDEGEIPIPLIVGIQAEAYASAKVREALEDLLNTLETREFDGGQRQITTHIRSLTPSTPA
complement(1399166..1399327)       Uncharacterised protein; NCTC12033_01362                                             N/A                 BordetellaaviumMNKENSMNRKYIVMFWDAAGNARQSDKMDKTTAQAFAASMLPEQEARVVLVSA
complement(1399406..1399609)       PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: hypothetical protein; NCTC12033_01363; phage(gi971766275)     1.88e-13            BordetellaaviumMNALDTITKIAGRAVELTIRGEKSFTFSFDGRDDSASARLMDFFRSAGKVASDYDAECDHTCVYVDA
complement(1400404..1400721)       phage protein; NCTC12033_01364                                                       N/A                 BordetellaaviumMARLLNVAPQNVNNWEKRGPSKEALLDAQAAFGVNATWAATGTGPMFIGGSPPDQGDHWPFARIDVRRIQRLSTDERAYVEGKLEAVIEAVEARIQEQKSGKQAA
complement(1400805..1401107)       Uncharacterised protein; NCTC12033_01365                                             N/A                 BordetellaaviumMARLHCPGGLSEYFRVINTNLRRYAAPLPIAHALNGTRLIKEFQALSYSGRTAKGVNQSCMGVLIWGHRFSGFPQLNNMFNNWVNTACINSPFTRCTIAP
complement(1401167..1401331)       Uncharacterised protein; NCTC12033_01366                                             N/A                 BordetellaaviumMTDTEKLLETAEGIARRRFTDPSEKTVMELFQELAAERDRRALESAEAFCATVH
1401367..1401681                   PHAGE_Burkho_vB_BmuP_KL4_NC_047958: hypothetical protein; NCTC12033_01367; phage(gi100012)     1.39e-22            BordetellaaviumMSTQTVSTDEVENTRKIAERLRSDIGRAISLFTQARAADFMGISASTVNRIVADDLDKVCHLMAAIGWQFAPIDAMVVSKAQLEAYEEFAYEYLRPKVEARRRG
1401683..1401895                   PHAGE_Burkho_BcepMigl_NC_019917: hypothetical protein; NCTC12033_01368; phage(gi431809873)     1.14e-10            BordetellaaviumMTHQLARLSGQLCARADFRAFCGAATADEAAAYIRRVCCIESRRELDHNPQARDRFHELIRRPFAYRTGR
1401892..1402848                   PHAGE_Thalas_BA3_NC_009990: hypothetical protein; NCTC12033_01369; phage(gi160700630)     1.63e-18            BordetellaaviumMNYYPHHIGDYLKDTAHLTMIEDGAYRRLLDLYYQHEQPLPVEKRQIYRLSRAASTAERKAVDIILSEYFALTDAGWTHRRCDSEIEKSREKSDKASKSAAKRWHKEGNANAHANAHANAHANASEPAMPTHSEGNAYPITNNQEPKEKEYLSSGTEGAEAARDGSKSPDEISQADYLPSGTVYGQMAKLLRSRGVDVAAGNPHMRAWVDKGLTEEEALAGIEAARLAKPAPEAIPWAYLSKTLETLRAKAAAVPDKAAQSAKPTQTDDRWWLNNAGIDRKGRELGLFARGGESYLDFKDRIFEALRRRDAAAQEQTA
1402845..1403327                   phage protein; NCTC12033_01370                                                       N/A                 BordetellaaviumMSYAEAAAAVSHGQAPQHDHRLCSAPGCVLPGTISDSTTGTVDWLCSLHHGAPHSEYAGISARMGNRRKLLILAQRLSNAGTADPVPEQVTAWIKAQGRGDLLPSGPATCRHLGSSMLRILADECRAPQARMGNSTKDSRKPDSWSPAADAARAFLGGLA
1403324..1404040                   phage protein; NCTC12033_01371                                                       N/A                 BordetellaaviumMTQIDFAAAQADIALDPMAGTVAALNLQEGTFPVRNGANGFGVAHTQRGDSFAAQKGEFDRIESHARAHVSPTSIVVEKINIGLLALDLGTKTGYALRRRDGRITHGTEVFTPRSSWTPGQKWQRYRAWLSRMITDHAVGIIAFEDVKAHGKSGVLAAHAYGGYRAMLEMVADQHNIELVPVGVGVVKKHWTGKGNADKAAMVAQAKARGYRPETDNDADALAILDWAVARERSSGRG
1404042..1404311                   Uncharacterised protein; NCTC12033_01372                                             N/A                 BordetellaaviumMEQLTPAPAVDWSGVFLALRREGYTMGDVSHYAQIPRATMIGWAQGAEPRHQDGETVIKFWSEVMQLPREALPTLESNRAGSRLGQARA
1404378..1404713                   Uncharacterised protein; NCTC12033_01373                                             N/A                 BordetellaaviumMSRSKKAILEPGAAPTPATTPDANLADQTQSPPEPVTTVGDPAPAPDATDTAAAAPVVAATPVETAQVEPSRPTKTDYASMAAAAIDPTTLIAPVLSRDGWVVPVRSAERG
1404715..1404990                   Uncharacterised protein; NCTC12033_01374                                             N/A                 BordetellaaviumMGKKGILGAVGSVIGIGGSAAKVEAAPKAEPKADPEAERRKAENEAATAANAKTAELTRQRRAGSLLASGSAGGEAKTSSVLAYGKGRLGD
1404993..1406624                   PHAGE_Pelagi_HTVC010P_NC_020481: head-tail connector protein; NCTC12033_01375; phage(gi460042262)     1.84e-80            BordetellaaviumMAEHQGIAHEILRRYAALKGARSSHEQTWRDCYDHSFPARSQGFSGDGETISAVQTKQARLYDSTTTDSARILASGIQSGMTPANSRWFGMQVWDQTDGERRWLDNSADRLWRAIHSSNFDADSFECNLDVVVAGWFVLMIEENKDQDGRPDGLRFIQYPISTCYLAASTASGQVDTLYRSYTLTAEQMVAEFGIDRVSDKVRDCYHDGKYDQRFNLLHAIYPRRISAVGARRAKNLPYASVHIECDGKAVLRESGYHERPFVAPRWTVIPNTVYATGPLFDALPDARTLNEICRMELAAADVAISGMWIAKDDGVLNPRTVKIGPRRVVVANDTDSMKPLTTGANFGISFTKREQLTAQIRKIMMADQLQPQDGPAMTATEVHVRVQLIRQLLGPVYGRLQAEYLQPLIERCFGLAMRAGLFDQPPESLADRPFTVVYLSPMAKSQKMEEVSAIESTFAAAAQLAAATGDPSVWDNFDRDEGVRMAADGRGIPAKLVRSADQVAELREAREQQQAAQQQQGMQQALAAEAASAGIQRAARAA
1406621..1406854                   Uncharacterised protein; NCTC12033_01376                                             N/A                 BordetellaaviumMIDPQAYKEIFEDDRRGAAILEDLTARFARPAVVTGGIDAVLQTYQRDGMRRVIEHIVNQINRASGVPDPNADQGDL
1406854..1407735                   Uncharacterised protein; NCTC12033_01377                                             N/A                 BordetellaaviumMWIRGLMYRAMQEAGVEGGGGGGGVTGADGSGGNDEGLNNDAGASQRTGSLLKQGEGGAEPLSQDFIPEKYRVSKEDGTFDLEASARKMAEAHGHLEKRIGQGDLPPKSSADYSIDPPEGMKDLDLRGDADMASFLEKAHAAGITQKQMDLVMGEYFRLAPMLAQGAATLDEQGAAAELKATWANDADFTRNIGMAHAAASFGASRAGLDMEQVYSAIGNNPTAMRLLAAIGAEFQEDSTPAGGAVPQLSGEDRIRELELSEAYRNPRHHDHAKVSEQVRRYYERKHGTAPVG
1407930..1408799                   PHAGE_Pelagi_HTVC010P_NC_020481: putative major capsid protein; NCTC12033_01378; phage(gi460042266)     9.22e-22            BordetellaaviumMSNTITQAFVIQWDNAIRMQAQQTESRLAGAVTDRGTITGESFTVNLLAPLGDMPENTVRHGDTVFSEAEHSTRVALMRDFFQALPVDRNDEPKLLANPLSGSYNQSLIAAHNRRKDSIIYNALIGTTQTKEGGQIALPASQIVAAGGATFTKSKLLVARKIFRKNEADKHNGETLNIIYTADMLEAILADTTLTSIDHMAVKMLQDGDVSGNWMGFRWIPYEALKITGGNTARTVAWTNSAIHFGSGYVEGTAGRRKDKKNLMQVDMAASHGAARAEESKVVAIDYLI
1408822..1409280                   Uncharacterised protein; NCTC12033_01379                                             N/A                 BordetellaaviumMPEVNSAQAQKMANRKKLMPAESHGRQRVLVATLTDGHPAYPVGTTILLGHVPVNSRFLAGAKISVAGGGTASSTLAIGIRKLVTQEVIDAEGLAVAAALSAAATVAADTGALIAGAADYITPVDVEVFATVKGAELAAGQRLRVEVPYVTD
1409360..1409935                   PHAGE_Burkho_BcepC6B_NC_005887: hypothetical protein; NCTC12033_01380; phage(gi48697201)     2.59e-18            BordetellaaviumMSSSSPISICSNALLRLGGSPISSFEDPSKYAPAAGNIWPTVRDAILRAHYWNFATKRVLLAPRADAPAFDYRFAFDVPGDWLRTLQVGQAGWAHEFQKEGRSILANINPLPLVYIFRNDETSTWDDAVVEVAELKMAAALAYLVTASTSLRDSYNQEADVMLARAKSLDGQDGSPEQFPDSPLLAARFGG

#### region 4 ####
1415111..1416997                   PHAGE_Burkho_BcepC6B_NC_005887: SLT domain-containing tail structural protein; NCTC12033_01385; phage(gi48697206)     1.77e-22            BordetellaaviumMALDEMYADSLKAALDNRQQIDPIGPKTERGFSFWGTAAAPFTGVAAGSLESAAFLSDMAGAFGTVTAAYGTTGVLPFAETDEQRAWREQGAAAARKKVEDGDGYSTEVGDDLRRSSRWLGPNPETAGFAEQTVFNFSRMVTKAVGYSVATGNPATGALLTGVDEGVTVSDELRREGVDTQTRTKIGALAGVATGVGVALPVAGSGIKSTAALIAAGGPGLFIAQNQLSRDILQNANYDQQAMQYDPFDPVGLAVSTLLPAAFGGWALRARSRSAKGDAPGKDAGQPNVAHDSEVADAARVNAVRELVDSWKLEDPGNVRAANDALLSVMRAADQLASGSHVSVLDSIPISEAQGALALERMIARSEAERAALLSEADRVAERGSISAMRSEIAGLSERARASDEAAVKELARQLKSDNPRLSYKQALSEAKRQADQVSSEAMAAIARLEDAIDANANAVEAQRALKILDAKIAAMKAERAAISAPATEATAIAGAVRQMMGEQGAASRQDRTPRAGQTGQQSQRADQQPRPTSPEQVATRSTGSSEGATASPAKLSPATVQAAAEGAVAGRIAELATNRPDALVRLDGIEGDIPLTEALRLLDERASQAIADADLLRVAATCAIGAI
1415380..1415391                   attL                                                                                 N/A                 GGGTGCTGCGGC
1417006..1419486                   PHAGE_Burkho_BcepC6B_NC_005887: structural protein; NCTC12033_01386; phage(gi48697207)     0.0                 BordetellaaviumMEPKCIAKVNAAAGRTLTDAQIRDIEDRIRSTASSLARQDRATWSALPESQRTLLAAERAMQDIRAEAQRDLRNKHLQIIKTAEVGDRIVAIQDDLGFGRSKALVRHMDETASLEKGIKDQYWSQLRGLFDAVMSKDGQSLGQRALGMLFDVENPRMTRDLAIEVFARGEGGTGNALAVQAAKAWGQTIEAMRARFNNAGGDIGSLEYGYVPQSSDQARVRSAGKDAWIQKTLPKLNRSRYLHPDGRLMSDAELTKFLGAAWDTLATGGLNKLEPGRFQGSSARANSGSDPRQLHFKDGQAYVEYMGEFGSGSMYEAMTGHISGLARDIALLERYGPNPDHQMRVQMDLAAKEDGGLKRTLLNDPAGYWNVLSGKAGQMQNASLARLGADTRNIQVAAKLGRAVWASISDLPTYFVTVGYNRLPYWQALKNIGAQFNSETREFLSTHGLIAESVVSDLNRFSGDHIRNNWSGKVANSVMKLSLMNAWTDSMRRAFQMTMMGGLGKMAGKEWGALTEWDRSHLQRKGITADDWAVISQAQTTEFRGQRYLTPEAIMGTNAPNAEQLVSKVLGLIRDESEYAVINPDLATRAFQTWGGQQAGTIGGELARSVMQFKSFPFAMISRHYRRMIEAPRGVDGAPAIANRLAYGAATMIGTTIAGGIAFQIKEMLSGRDPIGLDTGRFWTEAVMQGGGLSIIGDLLFQDPRETPGGFAGTMAGTFGGPSMGTAADLLGLAVENSWRAASGDEVNFGAGAARTVRSTIPYGNLWWLSGAIDHSFFHALQENLSPGYLSRMEARSMRQNDQDYWWRLGSGMPDRGPDLSRMFGG
1419488..1419859                   Uncharacterised protein; NCTC12033_01387                                             N/A                 BordetellaaviumMRQDQYERLLALQEKLIDALVLEMDPDTWPGAGMLPSAMDQQTRGDRYWAKKNLAATQSVVMRNASLIGVVQRQTAGNVPGGGAEVTEGQPAADDGGLDAEIQNAEREAARVLARVQKVAGTR
1419856..1421517                   PHAGE_Caulob_Lullwater_NC_047860: putative transcriptional regulator; NCTC12033_01388; phage(gi100045)     3.94e-21            BordetellaaviumMSQRKRISFLAFFLIWAKIQGWEVPDLHVRVCHWLEHCRDPVRVLQVFRGAAKSTLYAVYKAWQLYCDGTWVSLIWAADGQLAKKLTRDAINVLRRHPLCGGMLPTKPGSQAFWVSGSVDPRNASMTAVGVNQNVTSARARDIDYDDVEVPKNIKTPEARENLRAKIQEATFILIPGGQETYIGTPHTHDSIYPEMIAAGAASLTIPLFEDSVRYEKTDQEMSYPVPFEPGPDGLYVFLGIYKHARLLVQDRDYRFEGGRVVFASPPGGTVLDIYARCAWPQRFTRAEVELRRRKTRTLNYWDSQYQLHAKPLKESRLDPNLIKAYDVHPRIETANRSVRMMLGQAQIVSARAYWDCALGRVKGDTSAFSLILDDAAGNIYWHVCEGLTGDFAVFSDDRNTTIIDGQVLQACRLIERFNIPNVYVETNGIGAFVPQLLRQAIKQERLRCAVEDIQVSGNKNARILEGLEPPIKSGVMWAHIDVLDGPLWDQMTQWDPSIREQPDDCLDSGAGAILQAPTRIGRLVKEKVGIPTAAQGEDWRPSGGVHEVTFET
1421634..1423274                   PHAGE_Yersin_PY54_NC_005069: tail fiber protein; NCTC12033_01389; phage(gi33770533)     6.27e-37            BordetellaaviumMCLAAKDMTVLINYERVVSGFVIQGLGSKVGGTVVFDVPPASGVSVILTLDVVLERQTDYQYNGDFQAPTVNNDFDRLWLALQGVDGKASSSLRFPPGEQPGYLPPIDARKGKALIFNPVIGKPEPSQDNYNDQAAIASAAAQASEQAARNAELSRAGAAQSAAAASASKDQAEAALKNMASYVTVDPIPGLDAQNVQQALETMALLGGGYMLQPIWCPTRDAIWPGCVPADGQLLPRALFPDAAANITGPTPGAPVVTDAQWLANPELRASYTPGDGSNTIRMPDYNGKSPGSLGALVMRGDGALSAGVDGVIQRDAMQRITGSVSPGVGNNTSYLISGTASGSFTLETAATSRYLANGDGVSAAGTKAINFDSALVARTAGETRALNATGCWVIRLFGVVANPGSADAAQLATDYAALASGLQALQAKVGSTLIYPNGGSAASPASLAINSRYVEANPFPGYRVSAVGEILVSGEWQQVGFSAYASTNSLGIAVTQLQDGRLMVETGISAFVSSLVLHGYSGATRPNITTPTPARVRVWKIGAA
1423355..1423663                   PHAGE_Achrom_Motura_NC_049849: hypothetical protein; NCTC12033_01390; phage(gi100246)     5.67e-12            BordetellaaviumMRGERPGENFIATESGEWVEVRYVPQSVTSAQGGMALIEAGLMDAVMAVVSSPELPAAHKWAWDRATIWERSSPSLGFIAQAAGISDEQMDDLFIRAAEIRS
1423720..1423953                   phage protein; NCTC12033_01391                                                       N/A                 BordetellaaviumMPQRTIRMNNDGLNLAISAGTGVAAWLATFSAVVPVLWGVYVLILIAIKLPELHEKNALFRRACAWVVSIVRRGRHG
1423946..1424401                   PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NCTC12033_01392; phage(gi100023)     2.20e-49            BordetellaaviumMDKGKIAAGVVSAAVALVAAWEGRSLIAYADPVGIPTICEGFTHGVKLGDVATPERCDALTEQEVRRALAVVDGSVPRPLPDSVRVALASFVYNVGPGAYGGSTLTRKLRAGDLAGACRELPRWVYAGGTKLRGLERRRDAEMRICLSELQ
1424380..1424844                   Uncharacterised protein; NCTC12033_01393                                             N/A                 BordetellaaviumMSVRTSVIGIVAGALLLAGVLAERHYYGAGQYRAGAAAKVAEIEKRQVAIARGWQEERDRADAEYRGAVLARQAAEKAVADQRGRIDGLLRQLAAQRRATTADASGRSDATSPDWIGVIGACVGAYEQLGRDAAGWADQVNGLQGYVRGLGSSR
1424481..1424492                   attR                                                                                 N/A                 GGGTGCTGCGGC
complement(1424846..1425925)       PHAGE_Burkho_BcepC6B_NC_005887: putative integrase protein; NCTC12033_01394; phage(gi48697215)     1.78e-55            BordetellaaviumMAREKRVDVDQGIDPAGLKASAKLEAKTAKLVKDVIADYRSKRLQHLANNTIRTYSRQLTIVDRSIGARPIKDVTPEDIVGIIERRKANWTTPSGGWRETETLYIVIREIFKFAAGQRLITVNPAVGISLEAVIGTRPKSKTRLMLTPSELREVMNARMNRQNQLSIWILMATAVRVSELYTAKRENIFLDEYTIKRLGAGRWHIPASKMGPGIDIPLAPPVVEWFKELSSLALDSAYILPARTAGRLERGGGDNYLDENTIAFCIDSWIDGHKPDVRRFTPHDLRSTARSYLRALGTPRDIAEMCLNHKLRGVEGIYDQYTYWPERLEALTKLADFYVSHQGEAQATGLARNALRLVG

#### region 5 ####
complement(3146534..3147019)       PROPHAGE_Xantho_33913: IS1477 transposase; NCTC12033_02942; phage(gi21231081)        2.91e-60            BordetellaaviumMDFVADGLAYGRRFRCLNVVDDYTRECLAIEVDTSLPGLRVAHVLERIGMIRGLPRSITVDNGPEFAGRALDAWAYQAGVKLSFIRPGKPVENAYVESFNGKFRDECLNEHWFLSLRQAKSLIEAWRLEYNTERPHSALGYLAPEQFAKNHQKEEIFNPGI
complement(3146968..3147288)       PROPHAGE_Xantho_33913: IS1404 transposase; NCTC12033_02943; phage(gi21232568)        6.83e-33            BordetellaaviumMKKRFTEEQIIGVLKEAETGAKVADLCRKHGISDATYYNWKAKYGGMTVSEAQRLKELEQENNRLKKLLAESVLDNAALKDLLGRTRAGRWILLPMAWPTAVGSVV
3147422..3147532                   PROPHAGE_Xantho_306: ISxac2 transposase; NCTC12033_02944; phage(gi21244663)          9.97e-07            BordetellaaviumMARMKELEAENARLRKMYVEEKLKAEIVTKALEKKW
3147553..3147807                   PROPHAGE_Xantho_306: ISxcd1 transposase; NCTC12033_02945; phage(gi21242257)          1.42e-24            BordetellaaviumMAQRAVQDRGISVRLACEAFKVSQTCYRYVAKADAENEEIASWLLRLTDNHRSWGFGLCFLCLRNVRASAGITSACIGSTVNLS
3147777..3148352                   PROPHAGE_Xantho_306: ISxac2 transposase; NCTC12033_02946; phage(gi21244662)          3.48e-105           BordetellaaviumMYRIYRELELNLRIKPRKRLIRQAPEPLSVPTTVNQVWSMDFMHDQLADGRSIRLFKVIDDFNREALGIEVDFSLPSERVTRALKQIISWRGKPMAIRCDNGPEYLSSAITEWARRWGIKLEYIQPGKPQQNAYVKRFNRTVRYEWLSQYHWDDLDQVQRAATEWMWFYNHERPNMALGGITPKQRLTMAA
3148199..3148210                   attL                                                                                 N/A                 GGTGCGCTACGA
3148455..3149081                   PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; NCTC12033_02947; phage(gi100021)     1.52e-12            BordetellaaviumMESANAAVDRRVPWNKGKLTGQKLLLKLREIWAIRMRLQMASNTRELAMFNLAIDSKLRACDLTRLQVQDIRHGSHVAAKATVMQQKTQRPVQFEITEQTRESLDAWIEARGLKAVDFLFPTRLHTSAHLSTRQYARIVHRWFASIGLDDTAYGTLTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTEV
3149281..3151221                   PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; NCTC12033_02948; phage(gi371496162)     2.95e-08            BordetellaaviumMALITKTKKELAPACPQVTLKRSLGQGGNGCVYLAAHEDHGEVAVKFFLNSDRRRWQRFRDEVKVVTTHLHDSPRVVPILEDWLPEHGTDSVPWYIMPKAETIREVLKSLTWREMLPAFVELADGLVELHRAGVAHRDIKPENLFRFDGGYRFGDFGIAAFPGRAGITKEDEPIGPATFMAPEMEANSGVADCFLADVYSLAKTIWALLTREKFAFPGQYRPKGHEGLAARAKENGFVLEPLDLLLERATDSLPGARPSASEFSANLREVAAIQYDAGKANQLQWEFASLEAMTGQGIARAEWRDPAAVLNVIRLLSRYHGMNHCFLPEGGGQHIRGANLCEGGAMLSLQISGGGADYIVLPTRLVVERFPNHPAFGYAVLEVGEAHRLTEGDAFLDGAVEKLRRFNDFDYAPDDGDSDEPQFAGLGEPCYRRFKGGLMVFAPTYGIYNRIDKYNGTAERLGLEELRRQYGELVERLGTTKLEPRALFPVVRLLHRDVARVPFVLQSISMDQFWTLFDLDEQMLRARGDSGSAIVGSGELLEVLRSMSSDPKRQRAKALLIRLTAQQKGEYLALVDVARGIIDPHEMATYAEDKSRSSYDVSYLLEKLGNGYLRRALEKFGVEPVAETVAVEVKTEDATTQNDDFR
complement(3151454..3151933)       PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; NCTC12033_02949; phage(gi100014)     4.69e-18            BordetellaaviumMELAPGVRHAAQFRDASREPGLVARIIVGHQLAAPIFQERAAVLAGPAGREVVEHCTQAVYSLKRWEALTRYLDDGDAPIDNNWVENQIRPWAIGRSNWLFAGSLRGGQRAAAIMSLIQSARLNGHDPYAYMKDVLTRLPTQKNSQIAELLPHRWQPAA
3152402..3152689                   PHAGE_Achrom_Motura_NC_049849: hypothetical protein; NCTC12033_02950; phage(gi100021)     2.91e-11            BordetellaaviumMALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVLAVGPGKKTEDGKILPVDLKVGDKVLFGKYAGQGVKVDGEELLVIREEEILAVIQ
3152724..3154364                   PHAGE_Vibrio_VAP7_NC_048765: hypothetical protein; NCTC12033_02951; phage(gi100134)     6.51e-130           BordetellaaviumMAAKQVLFADDARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAIVQEGLKYVAAGFNPIDLKRGIDKAVAAAVVELKKASKPVTTSKEIAQVGSISANSDSSIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINNPEKQVAALDDPFVLIYDKKISNIRDLLPVLEQVAKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGFGDRRKAMLEDIAILTGGTVISEETGMSLEKATLQELGQAKRIEVAKENTTIIDGAGDGKSIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALLRAKQAIAGLQGDTPDQNAGIKLILRAVEEPLRTIVTNAGEEASVVVNNVLNGKGNYGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELAEDKPAAPAMPGGMGGMGGMDF
3164604..3164615                   attR                                                                                 N/A                 GGTGCGCTACGA
