Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region,
   the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:
1. If the number of certain phage organism in this table  is more than 50% of the total number of CDS of the region, that phage 
   organism is considered as the major potential phage for that region; the percentage of the total number
   of that phage organism in this table in the  total number of proteins of the region is calculated and 
   then multipled by 100; the percentage of the length of that phage organism in this table in the length 
   of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:
1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber',
   'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased 
   by 10 for each keyword found.
2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
3. If there are at least 40 proteins in the region, the score will be increased by 10.
4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of
   the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
   


Totally 8 intact prophage regions have been identified.




                                  REGION         REGION_LENGTH            COMPLETENESS(score)           SPECIFIC_KEYWORD                             REGION_POSITION          TRNA_NUM                 TOTAL_PROTEIN_NUM       PHAGE_HIT_PROTEIN_NUM            HYPOTHETICAL_PROTEIN_NUM         PHAGE+HYPO_PROTEIN_PERCENTAGE    BACTERIAL_PROTEIN_NUM            ATT_SITE_SHOWUP                  PHAGE_SPECIES_NUM                MOST_COMMON_PHAGE_NAME(hit_genes_count)    FIRST_MOST_COMMON_PHAGE_NUM      FIRST_MOST_COMMON_PHAGE_PERCENTAGE   GC_PERCENTAGE                 
                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                  1              38.5Kb                   intact(150)                   integrase,lysin,terminase,portal,protease,tail     562012-600592            0                        43                      37                               6                                100%                             0                                yes                              12                               PHAGE_Entero_cdtI_NC_009514(22),PHAGE_Entero_mEp460_NC_019716(21),PHAGE_Salmon_Fels_1_NC_010391(10),PHAGE_Phage_Gifsy_1_NC_010392(9),PHAGE_Entero_BP_4795_NC_004813(8),PHAGE_Entero_c_1_NC_019706(8),PHAGE_Phage_Gifsy_2_NC_010393(8),PHAGE_Entero_mEp213_NC_019720(7),PHAGE_Entero_lambda_NC_001416(5),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Entero_DE3_NC_042057(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Entero_YYZ_2008_NC_011356(4),PHAGE_Entero_HK630_NC_019723(4),PHAGE_Shigel_Sf6_NC_005344(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Entero_SfI_NC_027339(3),PHAGE_Escher_PA28_NC_041935(3),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Entero_HK544_NC_019767(2),PHAGE_Salmon_SEN22_NC_028696(2),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Escher_phage_NC_004913(1)   23                               51.16%                           49.41%                        
                                  2              38Kb                     incomplete(50)                plate                                        816843-854924            0                        27                      13                               14                               100%                             0                                yes                              8                                PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Shigel_Stx_NC_029120(4),PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Salmon_SPN3UB_NC_019545(2),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Podovi_Lau218_NC_024329(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Acinet_YMC11/11/R3177_NC_041866(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Entero_HK225_NC_019717(1)   4                                18.51%                           48.54%                        
                                  3              29.2Kb                   intact(110)                   transposase,lysin,head,capsid,tail           851032-880238            0                        38                      32                               6                                100%                             0                                no                               13                               PHAGE_Entero_BP_4795_NC_004813(13),PHAGE_Entero_DE3_NC_042057(12),PHAGE_Entero_YYZ_2008_NC_011356(10),PHAGE_Stx2_c_1717_NC_011357(10),PHAGE_Entero_lambda_NC_001416(9),PHAGE_Entero_HK629_NC_019711(9),PHAGE_Entero_HK630_NC_019723(9),PHAGE_Phage_Gifsy_1_NC_010392(6),PHAGE_Entero_N15_NC_001901(5),PHAGE_Entero_phi80_NC_021190(4),PHAGE_Entero_VT2phi_272_NC_028656(4),PHAGE_Entero_cdtI_NC_009514(4),PHAGE_Stx2_II_NC_004914(3),PHAGE_Escher_PA28_NC_041935(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Entero_933W_NC_000924(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Salmon_Fels_1_NC_010391(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Escher_phi191_NC_028660(1)   12                               34.21%                           54.79%                        
                                  4              30.5Kb                   intact(110)                   integrase,transposase,virion                 978679-1009273           0                        14                      9                                5                                100%                             0                                yes                              5                                PHAGE_Stx2_c_1717_NC_011357(4),PHAGE_Escher_PA28_NC_041935(3),PHAGE_Stx2_II_NC_004914(2),PHAGE_Klebsi_vB_Kpn_IME260_NC_041899(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Stenot_vB_SmaS_DLP_5_NC_042082(1),PHAGE_Pseudo_SM1_NC_041877(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Vibrio_SIO_2_NC_016567(1),PHAGE_Klebsi_Sugarland_NC_042093(1)   4                                28.57%                           45.45%                        
                                  5              10.7Kb                   questionable(80)              transposase,virion                           1010092-1020823          0                        13                      10                               3                                100%                             0                                no                               3                                PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Acinet_vB_AbaM_ME3_NC_041884(3),PHAGE_Clostr_phiCD38_2_NC_015568(1),PHAGE_Clostr_phiCD111_NC_028905(1),PHAGE_Clostr_phiCD146_NC_028958(1),PHAGE_Entero_BP_4795_NC_004813(1)   6                                23.07%                           53.41%                        
                                  6              9.2Kb                    incomplete(50)                virion,transposase                           1022214-1031490          0                        11                      8                                3                                100%                             0                                no                               6                                PHAGE_Bacill_Shanette_NC_028983(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Bacill_JL_NC_028982(2),PHAGE_Pseudo_phiPsa374_NC_023601(1),PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1),PHAGE_Acinet_vB_AbaM_ME3_NC_041884(1),PHAGE_Erwini_vB_EamM_Caitlin_NC_031120(1),PHAGE_Erwini_vB_EamM_Asesino_NC_031107(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Cronob_vB_CsaP_GAP52_NC_019402(1),PHAGE_Entero_phi92_NC_023693(1),PHAGE_Escher_phAPEC8_NC_020079(1),PHAGE_Strept_Bing_NC_042106(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Caulob_CcrColossus_NC_019406(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Pseudo_VCM_NC_029065(1),PHAGE_Bacill_CP_51_NC_025423(1)   2                                18.18%                           51.29%                        
                                  7              10.9Kb                   incomplete(30)                integrase,head                               1157305-1168282          0                        17                      7                                10                               100%                             0                                yes                              6                                PHAGE_Entero_DE3_NC_042057(2),PHAGE_Entero_N15_NC_001901(2),PHAGE_Entero_phi80_NC_021190(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Staphy_phiN315_NC_004740(1),PHAGE_Mycoba_Phipps_NC_028942(1),PHAGE_Mycoba_Minerva_NC_026584(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Staphy_23MRA_NC_028775(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Staphy_StB20_like_NC_028821(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Staphy_phiBU01_NC_026016(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Mycoba_Acadian_NC_023701(1),PHAGE_Mycoba_Wanda_NC_022067(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Mycoba_Baee_NC_028742(1),PHAGE_Staphy_Ipla88_NC_011614(1)   2                                11.76%                           49.21%                        
                                  8              50.9Kb                   questionable(90)              integrase,head,tail                          1173900-1224873          0                        48                      45                               3                                100%                             0                                yes                              18                               PHAGE_Entero_lambda_NC_001416(28),PHAGE_Entero_HK629_NC_019711(25),PHAGE_Entero_DE3_NC_042057(24),PHAGE_Entero_HK630_NC_019723(24),PHAGE_Entero_BP_4795_NC_004813(7),PHAGE_Entero_mEp237_NC_019704(7),PHAGE_Entero_HK225_NC_019717(7),PHAGE_Entero_phi80_NC_021190(5),PHAGE_Entero_mEp460_NC_019716(4),PHAGE_Entero_cdtI_NC_009514(4),PHAGE_Escher_PA28_NC_041935(4),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Entero_N15_NC_001901(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Entero_YYZ_2008_NC_011356(3),PHAGE_Entero_mEp235_NC_019708(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Acinet_Acj61_NC_014661(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Vibrio_KVP40_NC_005083(1),PHAGE_Entero_T4_NC_000866(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Serrat_PS2_NC_024121(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Entero_vB_EcoM_VR25_NC_028925(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Paenib_Shelly_NC_041909(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Acinet_ZZ1_NC_018087(1),PHAGE_Acinet_Acj9_NC_014663(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Strept_YDN12_NC_028974(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Sphing_Lacusarx_NC_041927(1),PHAGE_Clostr_phiCT19406C_NC_029006(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Paenib_Xenia_NC_028837(1),PHAGE_Strept_SF3_NC_028952(1)   24                               58.33%                           50.35%                        
                                  9              31.1Kb                   questionable(90)              lysin,tail                                   1333349-1364496          2                        43                      38                               5                                100%                             0                                no                               14                               PHAGE_Entero_DE3_NC_042057(17),PHAGE_Entero_lambda_NC_001416(16),PHAGE_Entero_HK629_NC_019711(16),PHAGE_Entero_HK630_NC_019723(16),PHAGE_Entero_BP_4795_NC_004813(13),PHAGE_Entero_YYZ_2008_NC_011356(12),PHAGE_Stx2_c_1717_NC_011357(7),PHAGE_Entero_cdtI_NC_009514(7),PHAGE_Entero_mEp460_NC_019716(6),PHAGE_Stx2_vB_EcoP_24B_NC_027984(4),PHAGE_Entero_HK225_NC_019717(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Stx2_II_NC_004914(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Entero_N15_NC_001901(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Shigel_Stx_NC_029120(1)   17                               39.53%                           54.25%                        
                                  10             55.6Kb                   intact(150)                   tail,head,portal,terminase,lysin,lysis,plate,integrase     1664839-1720509          3                        72                      56                               16                               100%                             0                                no                               16                               PHAGE_Entero_YYZ_2008_NC_011356(33),PHAGE_Entero_BP_4795_NC_004813(30),PHAGE_Stx2_c_1717_NC_011357(22),PHAGE_Entero_mEp460_NC_019716(7),PHAGE_Entero_cdtI_NC_009514(7),PHAGE_Entero_933W_NC_000924(6),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Phage_Gifsy_2_NC_010393(4),PHAGE_Stx2_vB_EcoP_24B_NC_027984(4),PHAGE_Shigel_Stx_NC_029120(4),PHAGE_Stx2_II_NC_004914(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Entero_DE3_NC_042057(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Entero_HK544_NC_019767(2),PHAGE_Salmon_Fels_1_NC_010391(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Burkho_Bcep176_NC_007497(2),PHAGE_Escher_phi191_NC_028660(2),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Lactob_LL_H_NC_009554(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Escher_ECML_117_NC_025441(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Sinorh_phiLM21_NC_029046(1),PHAGE_Escher_P13374_NC_018846(1)   37                               45.83%                           51.95%                        
                                  11             26.1Kb                   intact(150)                   integrase,recombinase,transposase,tail       2052310-2078497          3                        35                      32                               3                                100%                             0                                yes                              12                               PHAGE_Entero_P88_NC_026014(18),PHAGE_Salmon_SEN4_NC_029015(6),PHAGE_Salmon_RE_2010_NC_019488(6),PHAGE_Salmon_SEN5_NC_028701(6),PHAGE_Salmon_Fels_2_NC_010463(4),PHAGE_Escher_PA28_NC_041935(3),PHAGE_Pasteu_F108_NC_008193(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Haemop_HP2_NC_003315(2),PHAGE_Aeromo_phiO18P_NC_009542(2),PHAGE_Entero_PsP3_NC_005340(2),PHAGE_Erwini_ENT90_NC_019932(2),PHAGE_Burkho_KS14_NC_015273(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Salmon_SP_004_NC_021774(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Vibrio_8_NC_022747(1),PHAGE_Crocei_P2559Y_NC_023614(1),PHAGE_Staphy_StauST398_4_NC_023499(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Vibrio_K139_NC_003313(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Burkho_BcepMu_NC_005882(1),PHAGE_Haemop_HP1_NC_001697(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Salmon_SEN1_NC_029003(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Escher_pro147_NC_028896(1),PHAGE_Sphing_PAU_NC_019521(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Burkho_KS5_NC_015265(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Strept_9874_NC_031023(1),PHAGE_Pseudo_B3_NC_006548(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Escher_P2_NC_041848(1),PHAGE_Strept_9871_NC_031069(1),PHAGE_Strept_9872_NC_031094(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Burkho_phiE202_NC_009234(1)   19                               51.42%                           50.48%                        
                                  12             44Kb                     questionable(90)              tail,capsid,head,transposase                 2129528-2173559          3                        59                      48                               11                               100%                             0                                yes                              22                               PHAGE_Entero_BP_4795_NC_004813(14),PHAGE_Entero_DE3_NC_042057(13),PHAGE_Entero_YYZ_2008_NC_011356(13),PHAGE_Entero_HK629_NC_019711(11),PHAGE_Stx2_c_1717_NC_011357(10),PHAGE_Entero_lambda_NC_001416(9),PHAGE_Entero_HK630_NC_019723(9),PHAGE_Phage_Gifsy_1_NC_010392(7),PHAGE_Entero_phi80_NC_021190(6),PHAGE_Entero_mEp237_NC_019704(6),PHAGE_Entero_HK225_NC_019717(6),PHAGE_Entero_N15_NC_001901(6),PHAGE_Entero_VT2phi_272_NC_028656(5),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Entero_mEp460_NC_019716(5),PHAGE_Entero_cdtI_NC_009514(5),PHAGE_Escher_TL_2011c_NC_019442(3),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Salmon_Fels_1_NC_010391(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Erwini_PEp14_NC_016767(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Escher_Pollock_NC_027381(2),PHAGE_Yersin_PY54_NC_005069(2),PHAGE_Escher_phi191_NC_028660(2),PHAGE_Escher_PA28_NC_041935(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Nitrin_1M3_16_NC_024217(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Erwini_vB_EamM_Caitlin_NC_031120(1),PHAGE_Erwini_vB_EamM_Asesino_NC_031107(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_ECML_117_NC_025441(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Salmon_epsilon15_NC_004775(1)   14                               23.72%                           51.99%                        
                                  13             62.5Kb                   intact(150)                   transposase,tail,head,portal,terminase,lysis,integrase     2211291-2273815          3                        78                      73                               5                                100%                             0                                yes                              12                               PHAGE_Stx2_c_1717_NC_011357(58),PHAGE_Entero_YYZ_2008_NC_011356(44),PHAGE_Entero_BP_4795_NC_004813(31),PHAGE_Stx2_II_NC_004914(19),PHAGE_Entero_VT2_Sakai_NC_000902(17),PHAGE_Escher_phage_NC_004913(13),PHAGE_Entero_933W_NC_000924(9),PHAGE_Entero_cdtI_NC_009514(9),PHAGE_Entero_mEp234_NC_019715(8),PHAGE_Escher_PA28_NC_041935(8),PHAGE_Stx2_vB_EcoP_24B_NC_027984(7),PHAGE_Entero_HK446_NC_019714(6),PHAGE_Entero_HK544_NC_019767(6),PHAGE_Entero_mEp213_NC_019720(5),PHAGE_Shigel_Ss_VASD_NC_028685(4),PHAGE_Entero_VT2phi_272_NC_028656(4),PHAGE_Entero_HK97_NC_002167(4),PHAGE_Escher_TL_2011c_NC_019442(4),PHAGE_Entero_DE3_NC_042057(3),PHAGE_Escher_PA2_NC_028449(3),PHAGE_Salmon_118970_sal4_NC_030919(3),PHAGE_Entero_HK022_NC_002166(3),PHAGE_Escher_HK75_NC_016160(3),PHAGE_Entero_Sf101_NC_027398(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Salmon_HK620_NC_002730(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Burkho_Bcep176_NC_007497(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Lactob_LL_H_NC_009554(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Sinorh_phiLM21_NC_029046(1)   58                               74.35%                           50.78%                        
                                  14             53.1Kb                   intact(150)                   tail,head,portal,terminase,lysin,lysis,integrase     2409727-2462838          3                        71                      61                               10                               100%                             0                                yes                              27                               PHAGE_Entero_BP_4795_NC_004813(21),PHAGE_Entero_YYZ_2008_NC_011356(19),PHAGE_Entero_cdtI_NC_009514(13),PHAGE_Entero_933W_NC_000924(12),PHAGE_Escher_PA28_NC_041935(11),PHAGE_Stx2_c_1717_NC_011357(11),PHAGE_Entero_mEp460_NC_019716(10),PHAGE_Stx2_vB_EcoP_24B_NC_027984(10),PHAGE_Entero_DE3_NC_042057(9),PHAGE_Entero_mEp213_NC_019720(8),PHAGE_Entero_lambda_NC_001416(8),PHAGE_Entero_c_1_NC_019706(8),PHAGE_Entero_HK629_NC_019711(6),PHAGE_Phage_Gifsy_2_NC_010393(6),PHAGE_Entero_VT2_Sakai_NC_000902(6),PHAGE_Entero_Min27_NC_010237(6),PHAGE_Entero_HK630_NC_019723(6),PHAGE_Salmon_Fels_1_NC_010391(5),PHAGE_Entero_mEp237_NC_019704(5),PHAGE_Stx2_II_NC_004914(4),PHAGE_Escher_HK639_NC_016158(4),PHAGE_Stx2_c_86_NC_008464(4),PHAGE_Entero_SfI_NC_027339(4),PHAGE_Escher_PA2_NC_028449(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Escher_phage_NC_004913(3),PHAGE_Shigel_Ss_VASD_NC_028685(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Entero_phiP27_NC_003356(3),PHAGE_Salmon_SEN34_NC_028699(3),PHAGE_Escher_phi191_NC_028660(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Lactob_Lj965_NC_005355(2),PHAGE_Salmon_BTP1_NC_042346(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Methan_psiM100_NC_002628(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Methan_psiM2_NC_001902(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Paenib_Xenia_NC_028837(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Acinet_Acj61_NC_014661(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Temper_phiNIH1.1_NC_003157(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Paenib_Shelly_NC_041909(1),PHAGE_Acinet_ZZ1_NC_018087(1),PHAGE_Acinet_Acj9_NC_014663(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Clostr_phiCT19406C_NC_029006(1),PHAGE_Strept_315.4_NC_004587(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Salmon_SEN22_NC_028696(1)   19                               29.57%                           50.82%                        
                                  15             76.6Kb                   intact(100)                   tail,lysis,transposase,integrase,injection     2699393-2776090          4                        88                      88                               0                                100%                             0                                yes                              18                               PHAGE_Escher_PA28_NC_041935(59),PHAGE_Entero_933W_NC_000924(44),PHAGE_Stx2_vB_EcoP_24B_NC_027984(41),PHAGE_Stx2_II_NC_004914(29),PHAGE_Entero_VT2_Sakai_NC_000902(26),PHAGE_Entero_VT2phi_272_NC_028656(23),PHAGE_Escher_PA2_NC_028449(20),PHAGE_Entero_Min27_NC_010237(18),PHAGE_Stx2_c_86_NC_008464(18),PHAGE_Entero_BP_4795_NC_004813(13),PHAGE_Escher_P13374_NC_018846(10),PHAGE_Shigel_Stx_NC_029120(10),PHAGE_Escher_TL_2011c_NC_019442(9),PHAGE_Escher_phage_NC_004913(9),PHAGE_Stx2_c_1717_NC_011357(8),PHAGE_Shigel_Ss_VASD_NC_028685(7),PHAGE_Entero_DE3_NC_042057(6),PHAGE_Entero_lambda_NC_001416(5),PHAGE_Entero_YYZ_2008_NC_011356(5),PHAGE_Shigel_Sf6_NC_005344(4),PHAGE_Entero_HK140_NC_019710(4),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Entero_Sf101_NC_027398(4),PHAGE_Entero_HK633_NC_019719(3),PHAGE_Escher_phi191_NC_028660(3),PHAGE_Entero_HK630_NC_019723(3),PHAGE_Entero_HK629_NC_019711(2),PHAGE_Entero_mEp234_NC_019715(2),PHAGE_Entero_IME10_NC_019501(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Escher_phiV10_NC_007804(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Escher_ECBP5_NC_027330(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Citrob_Margaery_NC_028755(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Citrob_vB_CfrM_CfP1_NC_031057(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Entero_mEpX2_NC_019705(1)   60                               67.04%                           49.04%                        
                                  16             20.6Kb                   questionable(70)              integrase,transposase,lysin                  3058318-3078927          0                        20                      12                               8                                100%                             0                                yes                              8                                PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Stx2_II_NC_004914(3),PHAGE_Entero_YYZ_2008_NC_011356(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Entero_HK544_NC_019767(2),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Staphy_phiPV83_NC_002486(1),PHAGE_Strept_315.4_NC_004587(1),PHAGE_Bacill_phi4J1_NC_029008(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Lister_vB_LmoS_188_NC_028871(1),PHAGE_Temper_phiNIH1.1_NC_003157(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Lactob_phiJB_NC_022775(1),PHAGE_Escher_phage_NC_004913(1)   5                                25%                              43.11%                        
                                  17             5.3Kb                    incomplete(30)                transposase                                  4041788-4047170          0                        8                       6                                2                                100%                             0                                no                               6                                PHAGE_Stx2_II_NC_004914(3),PHAGE_Entero_933W_NC_000924(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pseudo_pYD6_A_NC_020849(1),PHAGE_Cellul_phi14:2_NC_021806(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Lactoc_bIL312_NC_002671(1),PHAGE_Vibrio_VBP47_NC_020848(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Vibrio_VBP32_NC_020868(1)   1                                37.5%                            49.95%                        
                                  18             21.7Kb                   incomplete(50)                tail,integrase                               4651241-4673001          0                        22                      19                               3                                100%                             0                                yes                              9                                PHAGE_Entero_mEp460_NC_019716(10),PHAGE_Entero_YYZ_2008_NC_011356(7),PHAGE_Entero_cdtI_NC_009514(6),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Stx2_c_1717_NC_011357(4),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Pseudo_H66_NC_042342(2),PHAGE_Entero_DE3_NC_042057(1),PHAGE_Lister_A118_NC_003216(1),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Marino_P12026_NC_018269(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Burkho_AH2_NC_018283(1)   10                               45.45%                           47.56%                        
                                  19             24.7Kb                   questionable(90)              integrase,transposase,tail                   5352121-5376909          0                        17                      15                               2                                100%                             0                                yes                              11                               PHAGE_Entero_SfI_NC_027339(5),PHAGE_Entero_lambda_NC_001416(4),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Salmon_SEN34_NC_028699(3),PHAGE_Entero_HK97_NC_002167(3),PHAGE_Escher_PA28_NC_041935(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Entero_DE3_NC_042057(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Entero_mEp234_NC_019715(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Entero_c_1_NC_019706(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Escher_P2_NC_041848(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Klebsi_vB_KpnM_KpV477_NC_031087(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Klebsi_PKO111_NC_031095(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Pseudo_OBP_NC_016571(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Salmon_Fels_2_NC_010463(1)   5                                29.41%                           44.06%                        
