Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 8 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 18.4Kb questionable(80) tail,lysin,transposase 392662-411100 0 24 22 0 91.6% 2 no 6 PHAGE_Burkho_BcepMu_NC_005882(16),PHAGE_Burkho_phiE255_NC_009237(16),PHAGE_Rhizob_RR1_B_NC_021557(7),PHAGE_Vibrio_X29_NC_024369(5),PHAGE_Pseudo_JBD67_NC_042135(3),PHAGE_Pseudo_JBD25_NC_027992(3),PHAGE_Ralsto_RSA1_NC_009382(2),PHAGE_Salmon_SEN4_NC_029015(2),PHAGE_Salmon_RE_2010_NC_019488(2),PHAGE_Pseudo_PPpW_3_NC_023006(2),PHAGE_Burkho_KS14_NC_015273(2),PHAGE_Salmon_SEN5_NC_028701(2),PHAGE_Pseudo_JBD18_NC_027986(2),PHAGE_Pseudo_B3_NC_006548(2),PHAGE_Entero_Arya_NC_031048(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Ralsto_RP12_NC_041911(1),PHAGE_Pseudo_PA7_NC_042060(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1),PHAGE_Entero_PsP3_NC_005340(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Haemop_SuMu_NC_019455(1),PHAGE_Prochl_P_SSM7_NC_015290(1),PHAGE_Pseudo_SL2_NC_042081(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Burkho_KS5_NC_015265(1),PHAGE_Halovi_HGTV_1_NC_021328(1),PHAGE_Bacter_Lily_NC_028841(1),PHAGE_Pseudo_phiKZ_NC_004629(1),PHAGE_Caulob_CcrColossus_NC_019406(1),PHAGE_Clostr_phiCD211_NC_029048(1) 16 66.66% 48.54% 2 40.5Kb intact(120) tail,transposase,head,lysis 1733180-1773721 0 61 50 0 81.9% 11 yes 14 PHAGE_Burkho_BcepMu_NC_005882(31),PHAGE_Burkho_phiE255_NC_009237(31),PHAGE_Pseudo_B3_NC_006548(13),PHAGE_Pseudo_JBD67_NC_042135(11),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(9),PHAGE_Rhizob_RR1_B_NC_021557(9),PHAGE_Pseudo_JBD18_NC_027986(8),PHAGE_Pseudo_JBD25_NC_027992(7),PHAGE_Escher_D108_NC_013594(5),PHAGE_Entero_SfMu_NC_027382(5),PHAGE_Ralsto_RSA1_NC_009382(3),PHAGE_Burkho_KS10_NC_011216(3),PHAGE_Vibrio_X29_NC_024369(3),PHAGE_Salmon_SP_004_NC_021774(2),PHAGE_Entero_Mu_NC_000929(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Burkho_phi52237_NC_007145(2),PHAGE_Pseudo_JD024_NC_024330(2),PHAGE_Escher_vB_EcoM_ECOO78_NC_041926(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Haemop_SuMu_NC_019455(2),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Pseudo_PPpW_3_NC_023006(2),PHAGE_Escher_P2_NC_041848(2),PHAGE_Bacter_Lily_NC_028841(2),PHAGE_Pseudo_JBD24_NC_020203(2),PHAGE_Burkho_phiE202_NC_009234(2),PHAGE_Escher_pro483_NC_028943(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Cellul_phi10:1_NC_021802(1),PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(1),PHAGE_Rhodob_RcapMu_NC_016165(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Pseudo_JBD30_NC_020198(1),PHAGE_Pseudo_PA1phi_NC_023700(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Pseudo_MP29_NC_011613(1),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Pseudo_MP42_NC_018274(1),PHAGE_Clostr_phiCT19406B_NC_030947(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Bacill_PfEFR_5_NC_031055(1),PHAGE_Pseudo_JBD5_NC_020202(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Vibrio_12B12_NC_021070(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Clostr_phiCTC2B_NC_030951(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Pseudo_MP38_NC_011611(1),PHAGE_Mannhe_phiMHaA1_NC_008201(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Pseudo_JBD93_NC_030918(1),PHAGE_Entero_Arya_NC_031048(1),PHAGE_Bacill_250_NC_029024(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Salmon_Fels_2_NC_010463(1) 34 50.81% 54.57% 3 41.6Kb intact(150) integrase,capsid,terminase,tail,lysin,plate 1859752-1901368 0 57 51 0 89.4% 6 yes 9 PHAGE_Entero_fiAA91_ss_NC_022750(33),PHAGE_Entero_WPhi_NC_005056(31),PHAGE_Entero_P2_NC_001895(30),PHAGE_Escher_pro147_NC_028896(27),PHAGE_Escher_pro483_NC_028943(23),PHAGE_Yersin_L_413C_NC_004745(22),PHAGE_Escher_P2_NC_041848(21),PHAGE_Salmon_SP_004_NC_021774(3),PHAGE_Salmon_SEN5_NC_028701(2),PHAGE_Salmon_SEN4_NC_029015(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Strept_phiARI0923_NC_030946(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Thermu_P2345_NC_009803(1),PHAGE_Thermu_P7426_NC_009804(1),PHAGE_Strept_SpSL1_NC_027396(1),PHAGE_Natria_PhiCh1_NC_004084(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Synech_S_SM2_NC_015279(1),PHAGE_Entero_PsP3_NC_005340(1),PHAGE_Serrat_CHI14_NC_041996(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Entero_SfMu_NC_027382(1) 38 57.89% 50.11% 4 59Kb intact(150) integrase,plate,terminase,portal,coat,head,injection,tail,transposase 1978975-2038023 0 67 65 0 97% 2 yes 35 PHAGE_Entero_Sf101_NC_027398(20),PHAGE_Shigel_Sf6_NC_005344(16),PHAGE_Salmon_HK620_NC_002730(13),PHAGE_Entero_HK544_NC_019767(10),PHAGE_Entero_mEp234_NC_019715(8),PHAGE_Entero_HK446_NC_019714(8),PHAGE_Entero_HK106_NC_019768(8),PHAGE_Entero_HK140_NC_019710(8),PHAGE_Salmon_103203_sal5_NC_031946(6),PHAGE_Entero_IME10_NC_019501(6),PHAGE_Salmon_118970_sal4_NC_030919(6),PHAGE_Entero_c_1_NC_019706(6),PHAGE_Escher_RCS47_NC_042128(5),PHAGE_Entero_HK633_NC_019719(5),PHAGE_Salmon_vB_SemP_Emek_NC_018275(5),PHAGE_Entero_933W_NC_000924(5),PHAGE_Entero_SfI_NC_027339(5),PHAGE_Salmon_SEN22_NC_028696(5),PHAGE_Salmon_epsilon34_NC_011976(5),PHAGE_Entero_mEpX1_NC_019709(4),PHAGE_Escher_HK75_NC_016160(4),PHAGE_Entero_HK97_NC_002167(4),PHAGE_Salmon_SE1_NC_011802(4),PHAGE_Entero_lambda_NC_001416(4),PHAGE_Entero_HK022_NC_002166(4),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Entero_DE3_NC_042057(3),PHAGE_Entero_mEp235_NC_019708(3),PHAGE_Entero_HK542_NC_019769(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Salmon_BTP1_NC_042346(3),PHAGE_Salmon_SPN9CC_NC_017985(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(3),PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Entero_P1_NC_005856(3),PHAGE_Salmon_g341c_NC_013059(3),PHAGE_Salmon_ST160_NC_014900(3),PHAGE_Entero_UAB_Phi20_NC_031019(3),PHAGE_Endosy_APSE_1_NC_000935(2),PHAGE_Sodali_phiSG1_NC_007902(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Ralsto_RSK1_NC_022915(2),PHAGE_Edward_GF_2_NC_026611(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Entero_mEpX2_NC_019705(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Acinet_AbP2_NC_041998(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Pseudo_EL_NC_007623(1),PHAGE_Pectob_phiTE_NC_020201(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Strept_315.1_NC_004584(1),PHAGE_Entero_CAjan_NC_028776(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Pseudo_H66_NC_042342(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Salmon_GG32_NC_031045(1),PHAGE_Pseudo_Noxifer_NC_041994(1),PHAGE_Aeromo_pIS4_A_NC_042037(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Acinet_LZ35_NC_031117(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Pseudo_phi297_NC_016762(1),PHAGE_Salmon_STML_13_1_NC_042061(1),PHAGE_Klebsi_KLPN1_NC_028760(1),PHAGE_Escher_PhaxI_NC_019452(1),PHAGE_Strept_phi3396_NC_009018(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Salmon_Marshall_NC_022772(1),PHAGE_Erysip_SE_1_NC_029078(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Flavob_11b_NC_006356(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Salmon_Maynard_NC_022768(1),PHAGE_Shigel_Stx_NC_029120(1) 21 29.85% 47.23% 5 67.7Kb intact(150) tail,recombinase,integrase,protease,lysin,terminase,portal,capsid,head 2175973-2243753 2 76 62 0 81.5% 14 yes 34 PHAGE_Entero_BP_4795_NC_004813(13),PHAGE_Entero_YYZ_2008_NC_011356(11),PHAGE_Salmon_Fels_1_NC_010391(11),PHAGE_Entero_cdtI_NC_009514(9),PHAGE_Entero_phiP27_NC_003356(9),PHAGE_Entero_mEp460_NC_019716(8),PHAGE_Cronob_ENT39118_NC_019934(6),PHAGE_Entero_HK544_NC_019767(6),PHAGE_Shigel_Ss_VASD_NC_028685(5),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Entero_DE3_NC_042057(4),PHAGE_Entero_SfV_NC_003444(4),PHAGE_Escher_HK75_NC_016160(4),PHAGE_Entero_HK97_NC_002167(4),PHAGE_Entero_HK446_NC_019714(4),PHAGE_Entero_lambda_NC_001416(4),PHAGE_Entero_mEp235_NC_019708(3),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Entero_HK629_NC_019711(3),PHAGE_Entero_mEp234_NC_019715(3),PHAGE_Phage_Gifsy_2_NC_010393(3),PHAGE_Entero_HK106_NC_019768(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Escher_TL_2011c_NC_019442(3),PHAGE_Escher_phi191_NC_028660(3),PHAGE_Entero_HK630_NC_019723(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Bacill_phIS3501_NC_019502(2),PHAGE_Burkho_KS9_NC_013055(2),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Salmon_BTP1_NC_042346(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Entero_JenP2_NC_028997(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Escher_vB_EcoM_AYO145A_NC_028825(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Escher_Akfv33_NC_017969(2),PHAGE_Entero_JenP1_NC_029028(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Escher_vB_EcoM_VpaE1_NC_027337(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Rhizob_16_3_NC_011103(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Entero_UAB_Phi87_NC_027360(1),PHAGE_Staphy_80_NC_030652(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Erwini_vB_EamP_S6_NC_019514(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Propio_B22_NC_041891(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Entero_IME_EFm1_NC_024356(1),PHAGE_Escher_EC6_NC_027369(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Haemop_SuMu_NC_019455(1),PHAGE_Bacill_BtCS33_NC_018085(1),PHAGE_Escher_phiSUSP2_NC_028935(1),PHAGE_Lactob_J_1_NC_022756(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Staphy_88_NC_007063(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Clostr_phiMMP03_NC_028959(1),PHAGE_Salmon_BPS17L1_NC_042096(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Lactob_PL_1_NC_022757(1),PHAGE_Entero_phiFL1A_NC_013646(1),PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Salmon_BPS17W1_NC_042097(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Propio_Doucette_NC_041893(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Sulfit_EE36phi1_NC_012696(1),PHAGE_Brocho_BL3_NC_015254(1),PHAGE_Lactob_phiPYB5_NC_027982(1),PHAGE_Escher_wV8_NC_012749(1),PHAGE_Entero_IME_EFm5_NC_028826(1),PHAGE_Strept_TG1_NC_018853(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Erwini_Ea9_2_NC_023579(1),PHAGE_Staphy_52A_NC_007062(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Geobac_E3_NC_029073(1),PHAGE_Cronob_vB_CsaM_GAP31_NC_019400(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Bacill_phi105_NC_004167(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Clostr_phiCD27_NC_011398(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Clostr_phi3626_NC_003524(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Escher_HY02_NC_028872(1),PHAGE_Bacill_phBC6A52_NC_004821(1),PHAGE_Staphy_P954_NC_013195(1) 11 17.1% 48.56% 6 23.4Kb incomplete(40) integrase,plate 2519453-2542923 0 23 13 0 56.5% 10 yes 11 PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_ES18_NC_006949(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Lister_A118_NC_003216(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_vB_BhaS_171_NC_030904(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Synech_S_SM2_NC_015279(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Lister_A006_NC_009815(1),PHAGE_Entero_phiFL1A_NC_013646(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Pseudo_AF_NC_019923(1) 2 8.69% 48.45% 7 40.1Kb intact(110) lysin,tail,transposase,capsid,recombinase 2537504-2577641 0 42 31 0 73.8% 11 yes 17 PHAGE_Entero_lambda_NC_001416(10),PHAGE_Entero_HK629_NC_019711(10),PHAGE_Entero_DE3_NC_042057(9),PHAGE_Entero_HK630_NC_019723(9),PHAGE_Salmon_118970_sal3_NC_031940(6),PHAGE_Entero_mEp460_NC_019716(6),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Entero_N15_NC_001901(4),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Entero_YYZ_2008_NC_011356(3),PHAGE_Entero_cdtI_NC_009514(3),PHAGE_Entero_JenP1_NC_029028(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Entero_JenP2_NC_028997(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Bacill_Grass_NC_022771(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Escher_Akfv33_NC_017969(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Staphy_StauST398_4_NC_023499(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Escher_vB_EcoS_FFH1_NC_024139(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Escher_ECML_117_NC_025441(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) 10 23.8% 47.59% 8 49.2Kb intact(120) tail,transposase,lysis,integrase 2850555-2899764 3 63 52 0 82.5% 11 yes 22 PHAGE_Entero_DE3_NC_042057(16),PHAGE_Entero_lambda_NC_001416(15),PHAGE_Entero_HK630_NC_019723(14),PHAGE_Entero_HK629_NC_019711(11),PHAGE_Entero_BP_4795_NC_004813(9),PHAGE_Phage_Gifsy_1_NC_010392(9),PHAGE_Entero_YYZ_2008_NC_011356(8),PHAGE_Entero_HK225_NC_019717(7),PHAGE_Stx2_c_86_NC_008464(6),PHAGE_Entero_mEp460_NC_019716(6),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Entero_N15_NC_001901(5),PHAGE_Entero_cdtI_NC_009514(5),PHAGE_Entero_phi80_NC_021190(4),PHAGE_Entero_mEp237_NC_019704(4),PHAGE_Shigel_Stx_NC_029120(4),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Escher_HK75_NC_016160(3),PHAGE_Entero_phiP27_NC_003356(3),PHAGE_Shigel_POCJ13_NC_025434(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Escher_Akfv33_NC_017969(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Klebsi_phiKO2_NC_005857(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Entero_JenP1_NC_029028(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Entero_JenP2_NC_028997(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_PfEFR_5_NC_031055(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Bacill_250_NC_029024(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Escher_phage_NC_004913(1) 20 25.39% 51.77% 9 48.2Kb intact(150) capsid,tail,head,portal,terminase,lysis,transposase,integrase 3017900-3066139 0 73 68 0 93.1% 5 yes 28 PHAGE_Entero_DE3_NC_042057(24),PHAGE_Entero_lambda_NC_001416(24),PHAGE_Entero_HK630_NC_019723(19),PHAGE_Entero_HK629_NC_019711(15),PHAGE_Stx2_c_1717_NC_011357(13),PHAGE_Entero_BP_4795_NC_004813(12),PHAGE_Stx2_II_NC_004914(11),PHAGE_Entero_VT2_Sakai_NC_000902(10),PHAGE_Phage_Gifsy_1_NC_010392(9),PHAGE_Entero_YYZ_2008_NC_011356(9),PHAGE_Entero_SfI_NC_027339(9),PHAGE_Entero_HK225_NC_019717(8),PHAGE_Entero_cdtI_NC_009514(7),PHAGE_Entero_mEp237_NC_019704(7),PHAGE_Entero_933W_NC_000924(7),PHAGE_Entero_N15_NC_001901(6),PHAGE_Escher_PA28_NC_041935(6),PHAGE_Escher_phage_NC_004913(6),PHAGE_Entero_phi80_NC_021190(5),PHAGE_Entero_mEp460_NC_019716(5),PHAGE_Stx2_vB_EcoP_24B_NC_027984(5),PHAGE_Entero_HK140_NC_019710(5),PHAGE_Salmon_SEN22_NC_028696(5),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Stx2_c_86_NC_008464(4),PHAGE_Entero_mEp234_NC_019715(3),PHAGE_Entero_Sf101_NC_027398(3),PHAGE_Shigel_Ss_VASD_NC_028685(3),PHAGE_Salmon_118970_sal4_NC_030919(3),PHAGE_Entero_HK544_NC_019767(3),PHAGE_Entero_ST104_NC_005841(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Entero_mEp235_NC_019708(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_JenP2_NC_028997(2),PHAGE_Salmon_HK620_NC_002730(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Salmon_SE1_NC_011802(2),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Entero_JenP1_NC_029028(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Escher_phiV10_NC_007804(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Bacill_PfEFR_5_NC_031055(1),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Bacill_Grass_NC_022771(1),PHAGE_Escher_Akfv33_NC_017969(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Brocho_BL3_NC_015254(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Entero_fiAA91_ss_NC_022750(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Escher_vB_EcoS_FFH1_NC_024139(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Lactob_LfeSau_NC_029068(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Escher_APCEc02_NC_041869(1),PHAGE_Bacill_250_NC_029024(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Bacill_SIOphi_NC_042133(1) 23 32.87% 50.29% 10 17.6Kb incomplete(50) head,capsid,integrase 3072059-3089704 0 21 9 0 42.8% 12 yes 8 PHAGE_Entero_phi80_NC_021190(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Entero_P4_NC_001609(1),PHAGE_Entero_DE3_NC_042057(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Gordon_Ghobes_NC_031028(1),PHAGE_Staphy_PVL_NC_002321(1),PHAGE_Strept_YDN12_NC_028974(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Proteu_VB_PmiS_Isfahan_NC_041925(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Strept_TP1604_NC_028818(1),PHAGE_Staphy_TEM123_NC_017968(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Pseudo_H66_NC_042342(1),PHAGE_Staphy_tp310_1_NC_009761(1),PHAGE_Strept_phiSAJS1_NC_029005(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Aggreg_S1249_NC_013597(1) 2 9.52% 49.73% 11 29.1Kb incomplete(50) tail 3616278-3645416 0 11 7 0 63.6% 4 yes 4 PHAGE_Escher_P2_NC_041848(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_SfMu_NC_027382(1) 4 27.27% 48.66% 12 44.9Kb intact(140) lysis,lysin,tail,capsid,protease,terminase,plate,integrase 3757314-3802218 1 62 57 0 91.9% 5 yes 8 PHAGE_Escher_phiV10_NC_007804(41),PHAGE_Escher_TL_2011b_NC_019445(38),PHAGE_Entero_Tyrion_NC_031077(33),PHAGE_Salmon_epsilon15_NC_004775(24),PHAGE_Salmon_SPN1S_NC_016761(22),PHAGE_Escher_RCS47_NC_042128(6),PHAGE_Burkho_BcepC6B_NC_005887(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Escher_PA28_NC_041935(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Entero_DE3_NC_042057(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Sinorh_PBC5_NC_003324(1),PHAGE_Staphy_42E_NC_007052(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Thermu_phiYS40_NC_008584(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Acinet_AP22_NC_017984(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Stenot_S1_NC_011589(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Caulob_Cr30_NC_025422(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Thermu_TMA_NC_015937(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Aeromo_pIS4_A_NC_042037(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Acinet_LZ35_NC_031117(1),PHAGE_Salmon_ST64T_NC_004348(1) 46 66.12% 48.94%