Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 9 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 35.1Kb questionable(80) transposase,injection,integrase 91921-127104 0 36 16 0 44.4% 20 yes 14 PHAGE_Bacter_APSE_2_NC_011551(3),PHAGE_Endosy_APSE_1_NC_000935(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Sodali_phiSG1_NC_007902(2),PHAGE_Gordon_Kita_NC_031233(2),PHAGE_Salmon_epsilon34_NC_011976(2),PHAGE_Riemer_RAP44_NC_019490(1),PHAGE_Mycoba_Che9c_NC_004683(1),PHAGE_Ralsto_RP12_NC_041911(1),PHAGE_Vibrio_pTD1_NC_041916(1),PHAGE_Vibrio_VP4B_NC_042136(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Liberi_SC2_NC_019550(1),PHAGE_Prochl_P_SSM2_NC_006883(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Gordon_Zirinka_NC_031097(1),PHAGE_Gordon_Attis_NC_041883(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Pseudo_PhiPA3_NC_028999(1),PHAGE_Salmon_BTP1_NC_042346(1),PHAGE_Clostr_c_st_NC_007581(1),PHAGE_Lactoc_WRP3_NC_027341(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Pseudo_PaMx11_NC_028770(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Pseudo_LKO4_NC_041934(1),PHAGE_Lactoc_949_NC_015263(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Lactoc_phiL47_NC_023574(1),PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Thermo_THSA_485A_NC_018264(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Gordon_SoilAssassin_NC_031251(1) 3 8.33% 48.91% 2 9.8Kb incomplete(20) transposase 1214954-1224762 0 10 7 0 70% 3 no 3 PHAGE_Escher_RCS47_NC_042128(5),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Staphy_SA1_NC_027991(1),PHAGE_Synech_S_IOM18_NC_021536(1),PHAGE_Synech_S_ShM2_NC_015281(1),PHAGE_Synech_S_SM2_NC_015279(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Bacter_B124_14_NC_016770(1),PHAGE_Cyanop_P_RSM1_NC_021071(1) 5 50% 52.37% 3 37.5Kb intact(107) integrase,head 1228860-1266378 1 12 12 0 100% 0 yes 3 PHAGE_Entero_P4_NC_001609(10),PHAGE_Entero_N15_NC_001901(1),PHAGE_Loktan_pCB2051_A_NC_020853(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Salmon_SP_004_NC_021774(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Stenot_S1_NC_011589(1),PHAGE_Escher_P2_NC_041848(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Proteu_VB_PmiS_Isfahan_NC_041925(1),PHAGE_Clostr_CDMH1_NC_024144(1),PHAGE_Entero_PsP3_NC_005340(1),PHAGE_Staphy_StauST398_5_NC_023500(1),PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(1),PHAGE_Burkho_KL3_NC_015266(1) 10 83.33% 47.67% 4 55.3Kb intact(130) integrase,plate,lysis,terminase,head,tail,transposase 1860727-1916122 3 75 66 0 88% 9 yes 29 PHAGE_Entero_DE3_NC_042057(17),PHAGE_Entero_YYZ_2008_NC_011356(17),PHAGE_Entero_BP_4795_NC_004813(17),PHAGE_Entero_lambda_NC_001416(15),PHAGE_Entero_phiP27_NC_003356(15),PHAGE_Entero_HK630_NC_019723(14),PHAGE_Entero_HK629_NC_019711(13),PHAGE_Entero_mEp460_NC_019716(9),PHAGE_Phage_Gifsy_1_NC_010392(8),PHAGE_Entero_cdtI_NC_009514(7),PHAGE_Entero_HK225_NC_019717(6),PHAGE_Shigel_Ss_VASD_NC_028685(5),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Stx2_c_86_NC_008464(5),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Stx2_vB_EcoP_24B_NC_027984(4),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_JenP2_NC_028997(3),PHAGE_Entero_N15_NC_001901(3),PHAGE_Entero_JenP1_NC_029028(3),PHAGE_Salmon_Fels_1_NC_010391(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Escher_Av_05_NC_025830(2),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Salmon_II_E1_NC_010495(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Salmon_37_NC_029045(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Haemop_SuMu_NC_019455(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Escher_JES_2013_NC_022323(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Escher_PA28_NC_041935(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Lactob_JCL1032_NC_019456(1),PHAGE_Escher_Akfv33_NC_017969(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Lactob_jlb1_NC_024206(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_EcP1_NC_019485(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Escher_rv5_NC_011041(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Salmon_FSLSP030_NC_021779(1),PHAGE_Escher_phi191_NC_028660(1) 18 22.66% 51.20% 5 55.2Kb intact(150) integrase,plate,lysin,terminase,portal,capsid,head,tail 2129836-2185100 5 51 44 0 86.2% 7 yes 23 PHAGE_Escher_HK75_NC_016160(8),PHAGE_Salmon_118970_sal3_NC_031940(7),PHAGE_Entero_mEp460_NC_019716(7),PHAGE_Entero_cdtI_NC_009514(7),PHAGE_Entero_BP_4795_NC_004813(7),PHAGE_Entero_YYZ_2008_NC_011356(6),PHAGE_Entero_lambda_NC_001416(6),PHAGE_Stx2_c_1717_NC_011357(6),PHAGE_Entero_DE3_NC_042057(5),PHAGE_Entero_HK544_NC_019767(5),PHAGE_Stx2_c_86_NC_008464(5),PHAGE_Entero_mEpX1_NC_019709(4),PHAGE_Entero_SfV_NC_003444(4),PHAGE_Entero_HK629_NC_019711(4),PHAGE_Entero_HK446_NC_019714(4),PHAGE_Entero_HK630_NC_019723(4),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Entero_mEp235_NC_019708(3),PHAGE_Entero_mEp234_NC_019715(3),PHAGE_Shigel_POCJ13_NC_025434(3),PHAGE_Entero_HK97_NC_002167(3),PHAGE_Entero_HK106_NC_019768(3),PHAGE_Entero_HK633_NC_019719(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Bacill_phIS3501_NC_019502(2),PHAGE_Burkho_KS9_NC_013055(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Rhizob_16_3_NC_011103(2),PHAGE_Escher_P13374_NC_018846(2),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Entero_JenK1_NC_029021(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Entero_IME_EFm1_NC_024356(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Bacill_BtCS33_NC_018085(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Lactob_J_1_NC_022756(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Lactob_PL_1_NC_022757(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_IME_EFm5_NC_028826(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Bacill_phi105_NC_004167(1),PHAGE_Geobac_GBK2_NC_023612(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Clostr_phi3626_NC_003524(1),PHAGE_Escher_phi191_NC_028660(1) 8 15.68% 51.03% 6 44.9Kb intact(150) tail,plate,lysin,head,terminase,capsid,portal,recombinase,integrase 2426074-2470996 0 55 48 0 87.2% 7 yes 9 PHAGE_Entero_P88_NC_026014(38),PHAGE_Salmon_SEN5_NC_028701(20),PHAGE_Salmon_SEN4_NC_029015(19),PHAGE_Salmon_RE_2010_NC_019488(7),PHAGE_Salmon_Fels_2_NC_010463(7),PHAGE_Escher_pro483_NC_028943(6),PHAGE_Entero_WPhi_NC_005056(5),PHAGE_Entero_fiAA91_ss_NC_022750(5),PHAGE_Salmon_SP_004_NC_021774(4),PHAGE_Erwini_ENT90_NC_019932(4),PHAGE_Escher_P2_NC_041848(4),PHAGE_Ralsto_RSA1_NC_009382(3),PHAGE_Ralsto_RSY1_NC_025115(3),PHAGE_Burkho_KS5_NC_015265(3),PHAGE_Escher_Av_05_NC_025830(2),PHAGE_Erwini_vB_EamP_S6_NC_019514(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Yersin_L_413C_NC_004745(2),PHAGE_Entero_PsP3_NC_005340(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Escher_P13374_NC_018846(2),PHAGE_Entero_P2_NC_001895(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Escher_RCS47_NC_042128(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Salmon_37_NC_029045(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Stenot_Smp131_NC_023588(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_GEC_3S_NC_025425(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Geobac_E3_NC_029073(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Mannhe_phiMHaA1_NC_008201(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Bacill_0305phi8_36_NC_009760(1),PHAGE_Salmon_FSLSP030_NC_021779(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Burkho_phiE202_NC_009234(1) 38 69.09% 53.13% 7 22.4Kb questionable(80) integrase,capsid,head,portal,terminase 2589466-2611874 0 20 13 0 65% 7 yes 12 PHAGE_Geobac_E2_NC_009552(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Shigel_SfII_NC_021857(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Psychr_Psymv2_NC_023734(2),PHAGE_Entero_LY0322_NC_042125(2),PHAGE_Burkho_phiE125_NC_003309(2),PHAGE_Burkho_phi1026b_NC_005284(2),PHAGE_Entero_EFRM31_NC_015270(1),PHAGE_Entero_P4_NC_001609(1),PHAGE_Acinet_Acj61_NC_014661(1),PHAGE_Bacill_WBeta_NC_007734(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Entero_vB_EfaS_AL2_NC_042127(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Staphy_StB20_like_NC_028821(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Lactoc_ul36_NC_004066(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Proteu_VB_PmiS_Isfahan_NC_041925(1),PHAGE_Strept_TP1604_NC_028818(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Strept_5093_NC_012753(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Acinet_ZZ1_NC_018087(1),PHAGE_Acinet_Acj9_NC_014663(1),PHAGE_Entero_vB_EfaS_AL3_NC_042126(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Strept_YDN12_NC_028974(1),PHAGE_Bacill_Gamma_NC_007458(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Bacill_phi105_NC_004167(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Strept_9874_NC_031023(1) 2 15% 50.64% 8 16.7Kb incomplete(30) integrase,plate 2624485-2641266 0 17 12 0 70.5% 5 yes 11 PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Entero_ES18_NC_006949(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Hypert_2_NC_014321(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Lister_A118_NC_003216(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_vB_BhaS_171_NC_030904(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Synech_S_SM2_NC_015279(1),PHAGE_Lister_A006_NC_009815(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Sulfol_SMV1_NC_023585(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_phiFL1A_NC_013646(1),PHAGE_Helico_phiHP33_NC_016568(1),PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Shigel_Stx_NC_029120(1) 2 11.76% 45.99% 9 42.9Kb intact(110) lysin,tail,transposase 2638653-2681641 0 51 42 0 82.3% 9 no 16 PHAGE_Entero_DE3_NC_042057(20),PHAGE_Entero_lambda_NC_001416(20),PHAGE_Entero_HK630_NC_019723(20),PHAGE_Entero_HK629_NC_019711(19),PHAGE_Entero_mEp460_NC_019716(10),PHAGE_Salmon_118970_sal3_NC_031940(6),PHAGE_Entero_N15_NC_001901(5),PHAGE_Entero_cdtI_NC_009514(5),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Entero_mEp237_NC_019704(4),PHAGE_Entero_HK225_NC_019717(4),PHAGE_Entero_JenP1_NC_029028(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_JenP2_NC_028997(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Entero_YYZ_2008_NC_011356(3),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Hypert_2_NC_014321(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Escher_Murica_NC_041871(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Escher_JES_2013_NC_022323(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Sulfol_SMV1_NC_023585(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Escher_ECML_117_NC_025441(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Helico_phiHP33_NC_016568(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Escher_pro483_NC_028943(1) 21 39.21% 50.63% 10 56.9Kb intact(140) tail,transposase,head,portal,terminase,integrase 2870596-2927545 0 62 52 0 83.8% 10 yes 38 PHAGE_Escher_HK639_NC_016158(7),PHAGE_Entero_lambda_NC_001416(7),PHAGE_Entero_DE3_NC_042057(6),PHAGE_Entero_cdtI_NC_009514(6),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(5),PHAGE_Pseudo_YMC11/02/R656_NC_028657(5),PHAGE_Salmon_SPN3UB_NC_019545(5),PHAGE_Phage_Gifsy_2_NC_010393(5),PHAGE_Entero_mEp460_NC_019716(5),PHAGE_Entero_HK630_NC_019723(5),PHAGE_Pseudo_PS_1_NC_029066(5),PHAGE_Entero_HK629_NC_019711(4),PHAGE_Phage_Gifsy_1_NC_010392(4),PHAGE_Pseudo_phiPSA1_NC_024365(4),PHAGE_Shigel_POCJ13_NC_025434(4),PHAGE_Entero_YYZ_2008_NC_011356(4),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Acinet_YMC11/11/R3177_NC_041866(4),PHAGE_Acinet_Bphi_B1251_NC_019541(4),PHAGE_Entero_mEp237_NC_019704(4),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(3),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Entero_JenP2_NC_028997(3),PHAGE_Entero_JenP1_NC_029028(3),PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Escher_vB_EcoM_FFH2_NC_024134(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Lactob_c5_NC_019449(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Lactob_phiLdb_NC_022762(2),PHAGE_Escher_K1_dep(1)_NC_027994(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Lactob_jlb1_NC_024206(2),PHAGE_Salmon_Fels_1_NC_010391(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Salico_CGphi29_NC_020844(2),PHAGE_Edward_GF_2_NC_026611(2),PHAGE_Escher_APCEc02_NC_041869(2),PHAGE_Halovi_HHTV_2_NC_021340(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Psychr_pOW20_A_NC_020841(1),PHAGE_Escher_K1_dep(4)_NC_027993(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Hypert_2_NC_014321(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Sodali_SO1_NC_013600(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_CAjan_NC_028776(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Thermu_OH2_NC_021784(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Mycoba_Phayonce_NC_028796(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Pseudo_LPB1_NC_027298(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_f18SE_NC_028698(1),PHAGE_Acidia_virus_NC_029316(1),PHAGE_Pseudo_LKO4_NC_041934(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Vibrio_SSP002_NC_041910(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Lactob_LLKu_NC_022989(1),PHAGE_Bacill_1_NC_009737(1),PHAGE_Burkho_BcepB1A_NC_005886(1),PHAGE_Sulfol_SMV1_NC_023585(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Escher_Gluttony_NC_031113(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Helico_phiHP33_NC_016568(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Pseudo_H70_NC_027384(1),PHAGE_Escher_slur09_NC_028840(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Bacill_TsarBomba_NC_028890(1),PHAGE_Escher_Akfv33_NC_017969(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Pseudo_MP29_NC_011613(1),PHAGE_Escher_Seurat_NC_027378(1),PHAGE_Escher_K1ind1_NC_041897(1),PHAGE_Pseudo_JD024_NC_024330(1),PHAGE_Pseudo_SM1_NC_041877(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Bacill_BCP78_NC_018860(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Pseudo_PaMx28_NC_028931(1),PHAGE_Escher_slur01_NC_028831(1),PHAGE_Escher_rv5_NC_011041(1),PHAGE_Acidia_virus_NC_007409(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon15_NC_004775(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Escher_Envy_NC_031081(1),PHAGE_Geobac_GBSV1_NC_008376(1) 6 11.29% 47.51% 11 40.8Kb intact(150) tail,head,capsid,portal,terminase,lysin,lysis,plate,integrase 3037714-3078539 3 47 39 0 82.9% 8 yes 24 PHAGE_Entero_cdtI_NC_009514(9),PHAGE_Entero_mEp460_NC_019716(8),PHAGE_Entero_lambda_NC_001416(7),PHAGE_Entero_BP_4795_NC_004813(6),PHAGE_Entero_DE3_NC_042057(5),PHAGE_Entero_SfV_NC_003444(5),PHAGE_Escher_HK75_NC_016160(5),PHAGE_Entero_YYZ_2008_NC_011356(5),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Entero_HK544_NC_019767(5),PHAGE_Entero_HK630_NC_019723(5),PHAGE_Entero_mEp235_NC_019708(4),PHAGE_Entero_HK629_NC_019711(4),PHAGE_Entero_HK446_NC_019714(4),PHAGE_Stx2_c_1717_NC_011357(4),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Entero_mEp234_NC_019715(3),PHAGE_Shigel_POCJ13_NC_025434(3),PHAGE_Entero_HK106_NC_019768(3),PHAGE_Shigel_Stx_NC_029120(3),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(2),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Bacill_phIS3501_NC_019502(2),PHAGE_Burkho_KS9_NC_013055(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Entero_c_1_NC_019706(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Rhizob_16_3_NC_011103(2),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Entero_JenK1_NC_029021(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Entero_IME_EFm1_NC_024356(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Bacill_BtCS33_NC_018085(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Lactob_J_1_NC_022756(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Lactob_PL_1_NC_022757(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_IME_EFm5_NC_028826(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Erwini_Ea9_2_NC_023579(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Bacill_phi105_NC_004167(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Geobac_GBK2_NC_023612(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Clostr_phi3626_NC_003524(1),PHAGE_Escher_phi191_NC_028660(1) 9 19.14% 50.81% 12 47.5Kb intact(120) tail,head,lysis,integrase 3208572-3256088 0 64 51 0 79.6% 13 yes 25 PHAGE_Entero_DE3_NC_042057(15),PHAGE_Entero_HK629_NC_019711(14),PHAGE_Entero_lambda_NC_001416(14),PHAGE_Entero_HK630_NC_019723(13),PHAGE_Entero_BP_4795_NC_004813(10),PHAGE_Phage_Gifsy_1_NC_010392(8),PHAGE_Entero_HK225_NC_019717(8),PHAGE_Entero_YYZ_2008_NC_011356(7),PHAGE_Entero_mEp460_NC_019716(7),PHAGE_Shigel_POCJ13_NC_025434(6),PHAGE_Entero_VT2_Sakai_NC_000902(6),PHAGE_Stx2_c_1717_NC_011357(6),PHAGE_Shigel_Stx_NC_029120(6),PHAGE_Entero_mEp237_NC_019704(5),PHAGE_Entero_933W_NC_000924(5),PHAGE_Entero_cdtI_NC_009514(4),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_N15_NC_001901(3),PHAGE_Stx2_II_NC_004914(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Entero_Min27_NC_010237(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Escher_Av_05_NC_025830(2),PHAGE_Salmon_SPN3UB_NC_019545(2),PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_PA28_NC_041935(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_phi191_NC_028660(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Salmon_37_NC_029045(1),PHAGE_Serrat_vB_Sru_IME250_NC_042047(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Escher_Cba120_NC_016570(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Entero_JenK1_NC_029021(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_vB_SalM_PM10_NC_031128(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_118970_sal3_NC_031940(1),PHAGE_Escher_phAPEC8_NC_020079(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Salmon_Det7_NC_027119(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_phiEF24C_NC_009904(1),PHAGE_Entero_EFLK1_NC_029026(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Salmon_FSLSP030_NC_021779(1) 15 23.43% 51.69% 13 50.2Kb intact(150) integrase,portal,terminase,capsid,head,tail,lysin,plate 3490234-3540468 0 56 46 0 82.1% 10 yes 15 PHAGE_Entero_P88_NC_026014(27),PHAGE_Salmon_SEN5_NC_028701(19),PHAGE_Salmon_SEN4_NC_029015(18),PHAGE_Salmon_RE_2010_NC_019488(6),PHAGE_Salmon_Fels_2_NC_010463(6),PHAGE_Erwini_ENT90_NC_019932(4),PHAGE_Yersin_L_413C_NC_004745(3),PHAGE_Entero_WPhi_NC_005056(3),PHAGE_Stenot_Smp131_NC_023588(3),PHAGE_Entero_PsP3_NC_005340(3),PHAGE_Burkho_KS5_NC_015265(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Escher_RCS47_NC_042128(3),PHAGE_Pseudo_phiCTX_NC_003278(3),PHAGE_Entero_fiAA91_ss_NC_022750(3),PHAGE_Salmon_SEN1_NC_029003(3),PHAGE_Escher_pro147_NC_028896(2),PHAGE_Ralsto_RSY1_NC_025115(2),PHAGE_Escher_P2_NC_041848(2),PHAGE_Ralsto_RSA1_NC_009382(2),PHAGE_Salmon_SP_004_NC_021774(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Burkho_KS14_NC_015273(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Escher_P13374_NC_018846(2),PHAGE_Shigel_SHFML_11_NC_030953(1),PHAGE_Staphy_B166_NC_028859(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Erwini_vB_EamP_Frozen_NC_031062(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Escher_ECML_134_NC_025449(1),PHAGE_Yersin_vB_YenP_ISAO8_NC_028850(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Vibrio_SSP002_NC_041910(1),PHAGE_Mycoba_Ariel_NC_028876(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Mycoba_Courthouse_NC_023690(1),PHAGE_Coryne_phi674_NC_042355(1),PHAGE_Burkho_phiE202_NC_009234(1),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Aeromo_vB_AsaM_56_NC_019527(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Staphy_JS01_NC_021773(1),PHAGE_Dinoro_vB_DshS_R5C_NC_041921(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Staphy_DW2_NC_024391(1),PHAGE_Mycoba_Baka_NC_042316(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Gordon_Mahdia_NC_042089(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Erwini_Ea9_2_NC_023579(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Mycoba_Minerva_NC_026584(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Staphy_23MRA_NC_028775(1),PHAGE_Mycoba_MiaZeal_NC_028953(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Mannhe_phiMHaA1_NC_008201(1),PHAGE_Gordon_Gustav_NC_042088(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Staphy_TEM123_NC_017968(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_mEpX2_NC_019705(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Entero_P2_NC_001895(1),PHAGE_Shigel_Stx_NC_029120(1) 28 48.21% 53.13%