gi|00000000|ref|UGHQ01000001.1|  Helicobacter pylori strain NCTC13338 genome assembly, contig: 1647079, gc%: 38.98%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1300480..1303050)       PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; NCTC13338_01241; phage(gi15800640)     7.99e-77            HelicobacterpyloriMNLFEKMTDQLHEALDSAIALALHYKNAEVTPLHMLFAMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISKQNIQLNQALIQSLENAQGLMAKIGDSFIATDAYLLANMNLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSTNVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNHKRMQEILKELSDLKEEKIKLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDFQQAAEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIENELQKRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGTLLEEDLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENIQKKALERGINITLDEKAKELIAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK
complement(1303123..1303407)       PHAGE_Sulfol_SMV3_NC_029103: putative DNA methylase N-4/N-6; NCTC13338_01242; phage(gi985760728)     5.31e-31            HelicobacterpyloriMSKEEFLLYTNGLWNFSGESKKRLKHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEYCELSKKRILESLSLV
complement(1303502..1304572)       PHAGE_Entero_If1_NC_001954: hypothetical protein; NCTC13338_01243; phage(gi9630756)     2.71e-34            HelicobacterpyloriMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWNNQGFSIKESDEERFKVFTLMKMPLMIRMHRDFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITLIKNPKNGVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIERDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIAVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGAGNVHADFKEQSLSC
complement(1304631..1304831)       IS606 transposase; NCTC13338_01244                                                   N/A                 HelicobacterpyloriMKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKDKKVEKIKRVRQSD
1304915..1305283                   PROPHAGE_Escher_Sakai: putative transposase; NCTC13338_01245; phage(gi15834436)      7.27e-49            HelicobacterpyloriMHAHLVFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSVEASLWGKHLWSPSYFAGSCGGAPLEMIKQYIQEQETPH
complement(1305481..1306113)       type II DNA modification enzyme; NCTC13338_01246                                     N/A                 HelicobacterpyloriMDFYGLKVFGLSLADIILERFKDFMREYPEPYKFLQVFYAQEKERFLNHKMNDYIKQNKSKEEASILARQGFVSVIGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALLVHFGEYSVLPDGDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPITSHIKVFMITPDNDEEISFKGKPKKARIVMEHE
1306404..1307576                   PHAGE_Campyl_CPX_NC_016562: putative DNA methylase; NCTC13338_01247; phage(gi371670951)     9.98e-22            HelicobacterpyloriMHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSDFEYEDNHADYEKWIKEHLILAKAVLKQSGCLFISMDDNKMAEVKIIANEIFGTRNFLGTFITKQATRSNAKHINITHEYVLSYAKNKAFAPGFKILRTLLPIYAKPLKDLMRTIKNVFKQKGQAQAQLVLKEQIKELSQKEHFNFLKNYNLVDEKGEIYFAKDLSTPSHPRSVAIQEINLFLEPLKSRGWSSDEKLKELYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVGLIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEANRDYCLNWSFYLCQKEEKIKNNPQAVSILKNKGYQNTISNIMLLRLEKIIKRSEYEILKTKSIVF
complement(1307595..1308857)       PHAGE_Gordon_Bantam_NC_031074: hypothetical protein; NCTC13338_01248; phage(gi100046)     9.86e-34            HelicobacterpyloriMHVLSVSEINVQIKALLEATFLQVRVQGEVSNLTIHKVSGHAYFSLKDSQSVIRCVLFKGNANRLKFALKEGQEVVVFGGVSVYVPRGDYQINCFEIEPKDIGSLTLALEQLKEKLRLKGYFDEANKLPKPHFPKRVAVITSQNSAAWADMKKIASKRWPMCELVCINTLMQGEGCVQSVVESIAYADSFHDTKNAFDAIVVARGGGSMEDLYSFNDEKIADALYLAKTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLPNSDEWLQRLDGFSVKLRRSFKTLLHQKKAHLEHLAASLKRLSFENKHHLNTLKLEKLTIALENKTLEFLRFKKTLLEKISIQALTSPFLQTKTERLNRLENALKLAYANWKLPQFGAFVSKNHQAVELEALKTGDKIELNNEKARASAEILSVDRV