Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 5 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 31.6Kb incomplete(40) integrase,recombinase 13568-45223 0 25 16 0 64% 9 yes 13 PHAGE_Entero_P1_NC_005856(4),PHAGE_Salmon_SSU5_NC_018843(3),PHAGE_Salmon_SJ46_NC_031129(3),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Strept_phiARI0004_NC_031920(1),PHAGE_Mycoba_Charlie_NC_023729(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Gordon_Nyceirae_NC_031004(1),PHAGE_Mycoba_Theia_NC_028960(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(1),PHAGE_Mycoba_UnionJack_NC_028802(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Rhodoc_CosmicSans_NC_028677(1),PHAGE_Rhodoc_RGL3_NC_016650(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Pseudo_phi3_NC_030940(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Rhodoc_RER2_NC_016653(1),PHAGE_Burkho_phiE12_2_NC_009236(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Gordon_Hedwig_NC_031099(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Staphy_vB_SepS_SEP9_NC_023582(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Staphy_Stau2_NC_030933(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Mycoba_Xeno_NC_031243(1) 2 16% 53.59% 2 42.3Kb questionable(90) transposase,head 118513-160843 0 18 13 0 72.2% 5 yes 9 PHAGE_Entero_P1_NC_005856(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Synech_ACG_2014b_NC_027130(1),PHAGE_Salmon_FSLSP088_NC_021780(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Ralsto_NP_2014_NC_023586(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Synech_ACG_2014c_NC_019444(1),PHAGE_Salmon_37_NC_029045(1),PHAGE_Ralsto_RSM3_NC_011399(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Synech_ACG_2014g_NC_026924(1),PHAGE_Ralsto_RSM1_NC_008574(1),PHAGE_Synech_S_MbCM100_NC_023584(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Salmon_FSLSP030_NC_021779(1),PHAGE_Prochl_Syn33_NC_015285(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_118970_sal1_NC_031930(1) 3 16.66% 50.01% 3 36.3Kb incomplete(30) lysin 242391-278702 0 21 12 0 57.1% 9 yes 4 PHAGE_Entero_P1_NC_005856(3),PHAGE_Salmon_SJ46_NC_031129(3),PHAGE_Salisa_1_NC_017983(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Mycoba_Dori_NC_023703(1),PHAGE_Entero_vB_IME197_NC_028671(1),PHAGE_Escher_pro483_NC_028943(1) 8 14.28% 48.06% 4 8.5Kb incomplete(50) lysin,transposase 319866-328382 0 8 8 0 100% 0 no 8 PHAGE_Entero_P1_NC_005856(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Shigel_SHSML_45_NC_031022(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Ralsto_NP_2014_NC_023586(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Entero_DT57C_NC_027356(1),PHAGE_Ralsto_RSM3_NC_011399(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Ralsto_RSM1_NC_008574(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Entero_GEC_3S_NC_025425(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Escher_T5_NC_005859(1),PHAGE_Vibrio_SIO_2_NC_016567(1) 1 25% 49.50% 5 50.1Kb intact(150) head,lysin,terminase,capsid,coat,transposase,tail,integrase 935703-985852 2 71 58 0 81.6% 13 yes 39 PHAGE_Salmon_64795_sal3_NC_031918(9),PHAGE_Vibrio_pYD38_A_NC_021534(9),PHAGE_Cronob_ENT47670_NC_019927(7),PHAGE_Salmon_IME207_NC_031924(7),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(6),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(6),PHAGE_Salmon_118970_sal4_NC_030919(6),PHAGE_Salmon_SPN3UB_NC_019545(5),PHAGE_Salmon_vB_SemP_Emek_NC_018275(5),PHAGE_Salmon_II_E1_NC_010495(4),PHAGE_Salmon_SJ46_NC_031129(4),PHAGE_Entero_ES18_NC_006949(4),PHAGE_Erwini_phiEt88_NC_015295(4),PHAGE_Entero_HK140_NC_019710(4),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(4),PHAGE_Entero_ST104_NC_005841(4),PHAGE_Entero_P22_NC_002371(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_mEp234_NC_019715(3),PHAGE_Shigel_POCJ13_NC_025434(3),PHAGE_Entero_mEp213_NC_019720(3),PHAGE_Salmon_SPN9CC_NC_017985(3),PHAGE_Entero_HK106_NC_019768(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Stx2_c_1717_NC_011357(3),PHAGE_Entero_P1_NC_005856(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Entero_UAB_Phi20_NC_031019(3),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Burkho_AH2_NC_018283(2),PHAGE_Salmon_SE1_NC_011802(2),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Xantho_Xp10_NC_004902(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Mycoba_Phaux_NC_021311(1),PHAGE_Mycoba_Phrux_NC_021309(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_JenK1_NC_029021(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Entero_9g_NC_024146(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Mycoba_Quink_NC_022330(1),PHAGE_Entero_JenP2_NC_028997(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Pseudo_PPpW_3_NC_023006(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Staphy_EW_NC_007056(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Mycoba_Goku_NC_022085(1),PHAGE_Klebsi_JD001_NC_020204(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Marino_P12026_NC_018269(1),PHAGE_Entero_phiEF24C_NC_009904(1),PHAGE_Entero_EFLK1_NC_029026(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Staphy_phiRS7_NC_022914(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Acinet_AP22_NC_017984(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Mycoba_PhatBacter_NC_022969(1) 7 12.67% 52.29% 6 51.8Kb intact(150) integrase,protease,lysin,terminase,portal,capsid,head,tail 1143083-1194979 0 54 46 0 85.1% 8 yes 26 PHAGE_Entero_phiP27_NC_003356(9),PHAGE_Salmon_Fels_1_NC_010391(6),PHAGE_Entero_mEpX1_NC_019709(5),PHAGE_Entero_SfV_NC_003444(5),PHAGE_Entero_mEp234_NC_019715(5),PHAGE_Entero_HK106_NC_019768(5),PHAGE_Entero_HK544_NC_019767(5),PHAGE_Escher_HK75_NC_016160(4),PHAGE_Entero_YYZ_2008_NC_011356(4),PHAGE_Entero_HK446_NC_019714(4),PHAGE_Entero_mEp390_NC_019721(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Entero_mEp235_NC_019708(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Escher_HK639_NC_016158(3),PHAGE_Pseudo_PMG1_NC_016765(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Entero_HK633_NC_019719(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Erwini_vB_EamP_S6_NC_019514(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Bacill_phIS3501_NC_019502(2),PHAGE_Burkho_KS9_NC_013055(2),PHAGE_Salmon_SSU5_NC_018843(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Burkho_KL1_NC_018278(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Bacill_phi105_NC_004167(2),PHAGE_Rhizob_16_3_NC_011103(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Rhodof_P26218_NC_029061(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Staphy_StB20_like_NC_028821(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Geobac_E2_NC_009552(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Staphy_37_NC_007055(1),PHAGE_Strept_phiNJ2_NC_019418(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Strept_Sfi19_NC_000871(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Bacill_BtCS33_NC_018085(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Staphy_EW_NC_007056(1),PHAGE_Lactob_J_1_NC_022756(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Lactob_LLKu_NC_022989(1),PHAGE_Pseudo_D3_NC_002484(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Lactob_PL_1_NC_022757(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(1),PHAGE_Acinet_Bphi_B1251_NC_019541(1),PHAGE_Staphy_StB20_NC_019915(1),PHAGE_Erwini_vB_EamM_Huxley_NC_031127(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Pseudo_73_NC_007806(1),PHAGE_Cronob_vB_CsaM_GAP31_NC_019400(1),PHAGE_Pseudo_PaMx42_NC_028879(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Escher_N4_NC_008720(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Lactob_A2_NC_004112(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Bacill_phiAGATE_NC_020081(1),PHAGE_Shigel_Stx_NC_029120(1) 9 16.66% 53.87% 7 11.3Kb incomplete(20) transposase 1233241-1244584 0 11 8 0 72.7% 3 no 8 PHAGE_Entero_P1_NC_005856(2),PHAGE_Gordon_Smoothie_NC_030696(1),PHAGE_Halovi_HGTV_1_NC_021328(1),PHAGE_Thermu_TMA_NC_015937(1),PHAGE_Staphy_42E_NC_007052(1),PHAGE_Gordon_ClubL_NC_030901(1),PHAGE_Thermu_phiYS40_NC_008584(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Achrom_JWF_NC_029075(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Caulob_Cr30_NC_025422(1),PHAGE_Gordon_Bachita_NC_030936(1) 1 18.18% 56.26% 8 54.9Kb intact(100) tail,terminase,lysin,transposase,integrase 1309423-1364322 0 62 53 0 85.4% 9 yes 34 PHAGE_Escher_HK639_NC_016158(12),PHAGE_Entero_mEp237_NC_019704(9),PHAGE_Salmon_SPN3UB_NC_019545(8),PHAGE_Phage_Gifsy_1_NC_010392(7),PHAGE_Entero_HK225_NC_019717(7),PHAGE_Pseudo_PS_1_NC_029066(7),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(6),PHAGE_Pseudo_phiPSA1_NC_024365(6),PHAGE_Pseudo_YMC11/02/R656_NC_028657(5),PHAGE_Phage_Gifsy_2_NC_010393(5),PHAGE_Acinet_Bphi_B1251_NC_019541(5),PHAGE_Entero_mEp390_NC_019721(4),PHAGE_Salmon_SEN34_NC_028699(4),PHAGE_Pseudo_PAJU2_NC_011373(4),PHAGE_Pseudo_D3_NC_002484(3),PHAGE_Pseudo_PMG1_NC_016765(3),PHAGE_Entero_HK140_NC_019710(3),PHAGE_Entero_P1_NC_005856(3),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Entero_phi80_NC_021190(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pseudo_phi297_NC_016762(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Shigel_SHFML_11_NC_030953(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Escher_vB_EcoM_PhAPEC2_NC_024794(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Staphy_37_NC_007055(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Pseudo_JBD44_NC_030929(1),PHAGE_Acidia_virus_NC_029316(1),PHAGE_Sinorh_phiM9_NC_028676(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Achrom_83_24_NC_028834(1),PHAGE_Staphy_EW_NC_007056(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Edward_eiAU_183_NC_023555(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Phormi_MIS_PhV1B_NC_028998(1),PHAGE_Salmon_Jersey_NC_021777(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Pseudo_MP29_NC_011613(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Rhizob_vB_RleM_P10VF_NC_025429(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Pseudo_PaMx74_NC_028809(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Rhizob_vB_RleS_L338C_NC_023502(1),PHAGE_Pseudo_PaMx42_NC_028879(1),PHAGE_Pseudo_phi3_NC_030940(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Pseudo_PaMx28_NC_028931(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Pseudo_PaP2_NC_005884(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Salmon_epsilon15_NC_004775(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Shigel_Stx_NC_029120(1) 12 19.35% 52.31% 9 24.3Kb intact(110) transposase 1813451-1837799 0 22 15 0 68.1% 7 yes 7 PHAGE_Entero_P1_NC_005856(2),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Entero_phi80_NC_021190(1) 4 9.09% 48.78% 10 44.4Kb intact(150) integrase,transposase,head,lysin,terminase,capsid,tail 2217027-2261433 2 48 42 0 87.5% 6 yes 21 PHAGE_Salmon_118970_sal3_NC_031940(11),PHAGE_Entero_HK140_NC_019710(11),PHAGE_Entero_mEp235_NC_019708(10),PHAGE_Entero_HK022_NC_002166(10),PHAGE_Entero_mEp390_NC_019721(8),PHAGE_Entero_mEpX2_NC_019705(6),PHAGE_Pseudo_PMG1_NC_016765(5),PHAGE_Entero_P1_NC_005856(5),PHAGE_Pseudo_PAJU2_NC_011373(5),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Entero_HK629_NC_019711(3),PHAGE_Escher_HK75_NC_016160(3),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_HK544_NC_019767(3),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Pseudo_D3_NC_002484(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Vibrio_12A4_NC_021068(1),PHAGE_Rhodof_P26218_NC_029061(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Erwini_vB_EamP_S6_NC_019514(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Klebsi_KP15_NC_014036(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864(1),PHAGE_Klebsi_Matisse_NC_028750(1),PHAGE_Agroba_7_7_1_NC_019519(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Burkho_KL1_NC_018278(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Escher_slur09_NC_028840(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Escher_Akfv33_NC_017969(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Xantho_Xp10_NC_004902(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(1),PHAGE_Acinet_Bphi_B1251_NC_019541(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Pseudo_73_NC_007806(1),PHAGE_Escher_vB_EcoS_FFH1_NC_024139(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Entero_ime09_NC_019503(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Klebsi_KP27_NC_020080(1) 10 22.91% 49.91% 11 16.1Kb questionable(80) tail,transposase 2263473-2279651 0 13 13 0 100% 0 no 8 PHAGE_Entero_HK544_NC_019767(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_HK106_NC_019768(2),PHAGE_Entero_mEp234_NC_019715(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Halocy_JM_2012_NC_017975(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Pseudo_D3_NC_002484(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Clostr_phiCD211_NC_029048(1) 4 30.76% 51.65% 12 49.5Kb questionable(80) integrase,terminase,head,coat,tail 2438511-2488097 0 56 42 0 75% 14 yes 21 PHAGE_Escher_HK639_NC_016158(11),PHAGE_Salmon_Fels_1_NC_010391(8),PHAGE_Entero_phiP27_NC_003356(8),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(6),PHAGE_Pseudo_phiPSA1_NC_024365(6),PHAGE_Pseudo_YMC11/02/R656_NC_028657(5),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Acinet_Bphi_B1251_NC_019541(5),PHAGE_Pseudo_PS_1_NC_029066(5),PHAGE_Cronob_ENT39118_NC_019934(4),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Entero_YYZ_2008_NC_011356(3),PHAGE_Entero_mEp390_NC_019721(3),PHAGE_Burkho_Bcep22_NC_005262(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Salmon_HK620_NC_002730(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Burkho_phi1026b_NC_005284(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Pseudo_YuA_NC_010116(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Entero_mEpX2_NC_019705(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Staphy_StB20_like_NC_028821(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Lactob_LfeInf_NC_029058(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Staphy_37_NC_007055(1),PHAGE_Strept_phiNJ2_NC_019418(1),PHAGE_Strept_Sfi19_NC_000871(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Staphy_EW_NC_007056(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Edward_eiAU_183_NC_023555(1),PHAGE_Salmon_Jersey_NC_021777(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Pseudo_PaMx74_NC_028809(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Pseudo_M6_NC_007809(1) 8 19.64% 53.48% 13 4.2Kb incomplete(30) transposase,plate 2670829-2675099 0 6 6 0 100% 0 no 6 PHAGE_Entero_P1_NC_005856(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Synech_S_CAM9_NC_031922(1),PHAGE_Bacill_0305phi8_36_NC_009760(1),PHAGE_Prochl_P_TIM68_NC_028955(1),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Shigel_SfIV_NC_022749(1) 1 33.33% 58.93% 14 8.8Kb incomplete(40) transposase,tail 3467308-3476179 0 9 7 0 77.7% 2 no 5 PHAGE_Entero_P1_NC_005856(2),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Cronob_CR5_NC_021531(1),PHAGE_Vibrio_pYD21_A_NC_020846(1),PHAGE_Acidia_3_NC_010155(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Pseudo_H103_NC_028819(1),PHAGE_Erwini_vB_EamM_Kwan_NC_031010(1),PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007(1) 2 22.22% 57.94% 15 18.2Kb questionable(80) terminase,head,portal,capsid,integrase 5085726-5103971 1 19 10 0 52.6% 9 yes 10 PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Entero_HK542_NC_019769(2),PHAGE_Geobac_E2_NC_009552(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Entero_P4_NC_001609(1),PHAGE_Salisa_1_NC_017983(1),PHAGE_Bacill_WBeta_NC_007734(1),PHAGE_Strept_phiBT1_NC_004664(1),PHAGE_Bacill_Fah_NC_007814(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Synech_S_CBS3_NC_015465(1),PHAGE_Bacill_JBP901_NC_027352(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Psychr_Psymv2_NC_023734(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Bacill_Gamma_NC_007458(1),PHAGE_Synech_S_CBS1_NC_016164(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Strept_A25_NC_028697(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Clostr_phi3626_NC_003524(1),PHAGE_Strept_P9_NC_009819(1),PHAGE_Entero_mEpX2_NC_019705(1) 1 15.78% 48.80%