Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 10 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 33.6Kb intact(140) tail,head,capsid,terminase,lysin,transposase 282079-315724 0 47 44 0 93.6% 3 no 24 PHAGE_Entero_HK140_NC_019710(12),PHAGE_Entero_mEp235_NC_019708(11),PHAGE_Entero_HK022_NC_002166(11),PHAGE_Entero_mEp390_NC_019721(11),PHAGE_Pseudo_PMG1_NC_016765(8),PHAGE_Pseudo_PAJU2_NC_011373(8),PHAGE_Entero_mEpX2_NC_019705(7),PHAGE_Pseudo_D3_NC_002484(6),PHAGE_Cronob_ENT39118_NC_019934(4),PHAGE_Escher_HK639_NC_016158(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Escher_HK75_NC_016160(3),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Entero_HK544_NC_019767(3),PHAGE_Salmon_Fels_1_NC_010391(3),PHAGE_Escher_TL_2011c_NC_019442(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Burkho_BcepIL02_NC_012743(2),PHAGE_Entero_HK629_NC_019711(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Clostr_c_st_NC_007581(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Burkho_DC1_NC_018452(2),PHAGE_Burkho_BcepMigl_NC_019917(2),PHAGE_Salmon_SPN1S_NC_016761(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Mycoba_Bobi_NC_022055(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Gordon_Zirinka_NC_031097(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Xantho_Xp10_NC_004902(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Entero_IME_EF4_NC_023551(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Vibrio_1_NC_028799(1),PHAGE_Rhizob_RR1_A_NC_021560(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Halocy_JM_2012_NC_017975(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Aurant_AmM_1_NC_027334(1),PHAGE_Lactob_Lc_Nu_NC_007501(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon15_NC_004775(1) 11 25.53% 50.74% 2 54.6Kb intact(150) tail,transposase,head,coat,terminase,lysin,recombinase,integrase 479183-533849 0 68 54 0 79.4% 14 yes 33 PHAGE_Escher_HK639_NC_016158(10),PHAGE_Entero_mEp237_NC_019704(10),PHAGE_Salmon_SPN3UB_NC_019545(9),PHAGE_Phage_Gifsy_1_NC_010392(8),PHAGE_Entero_HK225_NC_019717(7),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(6),PHAGE_Pseudo_phiPSA1_NC_024365(6),PHAGE_Phage_Gifsy_2_NC_010393(6),PHAGE_Salmon_SEN34_NC_028699(6),PHAGE_Pseudo_PS_1_NC_029066(6),PHAGE_Pseudo_YMC11/02/R656_NC_028657(5),PHAGE_Salmon_118970_sal4_NC_030919(4),PHAGE_Acinet_Bphi_B1251_NC_019541(4),PHAGE_Pseudo_PAJU2_NC_011373(4),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Salmon_SJ46_NC_031129(3),PHAGE_Entero_mEp390_NC_019721(3),PHAGE_Entero_HK140_NC_019710(3),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(3),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Entero_phi80_NC_021190(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Clostr_c_st_NC_007581(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Pseudo_D3_NC_002484(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Klebsi_phiKO2_NC_005857(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Pseudo_YuA_NC_010116(2),PHAGE_Pseudo_phi297_NC_016762(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Pseudo_F116_NC_006552(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1),PHAGE_Bacill_PM1_NC_020883(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Staphy_37_NC_007055(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Sinorh_phiM9_NC_028676(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Achrom_83_24_NC_028834(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Edward_eiAU_183_NC_023555(1),PHAGE_Salmon_Jersey_NC_021777(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Pseudo_MP29_NC_011613(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Rhizob_vB_RleM_P10VF_NC_025429(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Rhizob_RR1_A_NC_021560(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Salmon_epsilon15_NC_004775(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Shigel_Stx_NC_029120(1) 9 14.7% 52.70% 3 16.6Kb questionable(90) tail,terminase,head,portal,capsid,integrase 933436-950073 0 18 12 0 66.6% 6 yes 11 PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Shigel_SfII_NC_021857(3),PHAGE_Entero_P4_NC_001609(2),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Entero_mEp235_NC_019708(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Geobac_E2_NC_009552(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_mEpX2_NC_019705(2),PHAGE_Entero_EFRM31_NC_015270(1),PHAGE_Strept_phiBT1_NC_004664(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Strept_TG1_NC_018853(1),PHAGE_Entero_IME_EF4_NC_023551(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Psychr_Psymv2_NC_023734(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Strept_phiC31_NC_001978(1),PHAGE_Entero_EfaCPT1_NC_025465(1),PHAGE_Bacill_phi105_NC_004167(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Clostr_phi3626_NC_003524(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1) 2 16.66% 49.96% 4 38.5Kb intact(130) protease,transposase,recombinase,integrase 1362182-1400681 0 28 14 0 50% 14 yes 10 PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Clostr_c_st_NC_007581(2),PHAGE_Strept_YMC_2011_NC_018285(1),PHAGE_Entero_P4_NC_001609(1),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Strept_A25_NC_028697(1),PHAGE_Cronob_CR5_NC_021531(1),PHAGE_Erwini_Ea35_70_NC_023557(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Strept_TP_778L_NC_022776(1),PHAGE_Lactob_A2_NC_004112(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Entero_mEpX2_NC_019705(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Haemop_SuMu_NC_019455(1),PHAGE_Entero_If1_NC_001954(1) 3 7.14% 53.96% 5 34.5Kb intact(150) tail,plate,lysin,head,terminase,capsid,portal,integrase 1400685-1435210 0 45 36 0 80% 9 yes 6 PHAGE_Salmon_SEN5_NC_028701(26),PHAGE_Salmon_SEN4_NC_029015(22),PHAGE_Entero_P88_NC_026014(21),PHAGE_Salmon_SP_004_NC_021774(7),PHAGE_Salmon_Fels_2_NC_010463(7),PHAGE_Entero_WPhi_NC_005056(6),PHAGE_Salmon_RE_2010_NC_019488(6),PHAGE_Entero_fiAA91_ss_NC_022750(5),PHAGE_Erwini_ENT90_NC_019932(5),PHAGE_Salmon_SEN1_NC_029003(4),PHAGE_Entero_186_NC_001317(4),PHAGE_Yersin_L_413C_NC_004745(3),PHAGE_Entero_PsP3_NC_005340(3),PHAGE_Burkho_KS5_NC_015265(3),PHAGE_Ralsto_RSA1_NC_009382(2),PHAGE_Ralsto_RSY1_NC_025115(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Escher_pro483_NC_028943(2),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Pasteu_F108_NC_008193(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Burkho_BcepMu_NC_005882(1),PHAGE_Burkho_KL3_NC_015266(1),PHAGE_Haemop_HP1_NC_001697(1),PHAGE_Erwini_Ea9_2_NC_023579(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Halocy_JM_2012_NC_017975(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Rhizob_vB_RleM_PPF1_NC_025427(1),PHAGE_Erwini_vB_EamM_Kwan_NC_031010(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Mannhe_phiMHaA1_NC_008201(1),PHAGE_Lister_2389_NC_003291(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Entero_P2_NC_001895(1),PHAGE_Lister_LP_030_2_NC_021539(1) 26 57.77% 54.46% 6 39.9Kb intact(100) integrase,transposase,recombinase 2033311-2073278 0 28 15 0 53.5% 13 yes 12 PHAGE_Salmon_SJ46_NC_031129(3),PHAGE_Entero_P1_NC_005856(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Sulfol_SMV3_NC_029103(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Staphy_SpaA1_NC_018277(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Mycoba_20ES_NC_023597(1),PHAGE_Rhodob_RcRhea_NC_028954(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Rhizob_RHEph10_NC_034248(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Entero_phiFL4A_NC_013644(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Mycoba_ArcherNM_NC_031277(1),PHAGE_Strept_315.6_NC_004589(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Clostr_c_st_NC_007581(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Gordon_SoilAssassin_NC_031251(1) 3 10.71% 49.46% 7 29.6Kb intact(140) transposase,recombinase 2090149-2119758 0 31 27 0 87% 4 no 16 PHAGE_Entero_P1_NC_005856(6),PHAGE_Salmon_SJ46_NC_031129(4),PHAGE_Klebsi_phiKO2_NC_005857(2),PHAGE_Burkho_phiE12_2_NC_009236(2),PHAGE_Yersin_PY54_NC_005069(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Clostr_c_st_NC_007581(2),PHAGE_Brucel_BiPBO1_NC_031264(2),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Pseudo_phi3_NC_030940(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Rhodob_RcRhea_NC_028954(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Rhizob_RHEph10_NC_034248(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Escher_pro483_NC_028943(1) 4 19.35% 49.16% 8 33.8Kb questionable(70) integrase,head,capsid,tail 2336430-2370309 3 36 29 0 80.5% 7 yes 15 PHAGE_Pectob_ZF40_NC_019522(7),PHAGE_Salmon_SPN1S_NC_016761(6),PHAGE_Entero_Tyrion_NC_031077(5),PHAGE_Pelagi_HTVC010P_NC_020481(5),PHAGE_Burkho_BcepC6B_NC_005887(4),PHAGE_Escher_phiV10_NC_007804(4),PHAGE_Vibrio_VP5_NC_005891(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Burkho_BcepIL02_NC_012743(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Vibrio_QH_NC_027397(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Vibrio_J2_NC_027393(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Salmon_epsilon15_NC_004775(2),PHAGE_Entero_UAB_Phi78_NC_020414(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Escher_K1_dep(4)_NC_027993(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Liberi_SC1_NC_019549(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Klebsi_K11_NC_011043(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Liberi_SC2_NC_019550(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Salmon_SE2_NC_016763(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Vibrio_VP2_NC_005879(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Salmon_SETP13_NC_022752(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Escher_80001_NC_027387(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Entero_SP6_NC_004831(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Synech_S_CBP2_NC_025455(1),PHAGE_Salmon_BP12B_NC_031271(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_13a_NC_011045(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Vibrio_phi_A318_NC_025822(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Shigel_Stx_NC_029120(1) 7 19.44% 54.05% 9 35.5Kb intact(150) transposase,lysin,portal,virion,head,tail,plate 3001427-3036992 0 52 36 0 69.2% 16 no 18 PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(16),PHAGE_Haemop_SuMu_NC_019455(16),PHAGE_Escher_D108_NC_013594(5),PHAGE_Salmon_118970_sal3_NC_031940(5),PHAGE_Entero_SfMu_NC_027382(5),PHAGE_Pseudo_D3112_NC_005178(5),PHAGE_Pseudo_LPB1_NC_027298(4),PHAGE_Ralsto_RS138_NC_029107(4),PHAGE_Entero_Mu_NC_000929(4),PHAGE_Pseudo_JBD93_NC_030918(4),PHAGE_Pseudo_PA1phi_NC_023700(3),PHAGE_Pseudo_JBD25_NC_027992(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Pseudo_vB_PaeS_PAO1_Ab30_NC_026601(2),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Entero_SfV_NC_003444(2),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(2),PHAGE_Vibrio_12B12_NC_021070(2),PHAGE_Pseudo_MP38_NC_011611(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Pseudo_JBD24_NC_020203(2),PHAGE_Pseudo_H70_NC_027384(2),PHAGE_Pseudo_JBD69_NC_030908(2),PHAGE_Pseudo_DMS3_NC_008717(2),PHAGE_Pseudo_MP29_NC_011613(2),PHAGE_Pseudo_JD024_NC_024330(2),PHAGE_Pseudo_JBD5_NC_020202(2),PHAGE_Rhizob_RR1_A_NC_021560(2),PHAGE_Pseudo_JBD18_NC_027986(2),PHAGE_Burkho_phiE255_NC_009237(2),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Bacill_BalMu_1_NC_030945(1),PHAGE_Burkho_KS10_NC_011216(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Pseudo_JBD30_NC_020198(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1),PHAGE_Burkho_KL1_NC_018278(1),PHAGE_Rhizob_vB_RleM_PPF1_NC_025427(1),PHAGE_Pseudo_MP48_NC_024782(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Rhodob_RcapMu_NC_016165(1),PHAGE_Vibrio_SHOU24_NC_023569(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Erwini_vB_EamM_Huxley_NC_031127(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Burkho_BcepMu_NC_005882(1),PHAGE_Pseudo_73_NC_007806(1),PHAGE_Salmon_SEN1_NC_029003(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Pseudo_B3_NC_006548(1),PHAGE_Entero_HK630_NC_019723(1) 16 30.76% 53.76% 10 26.4Kb questionable(70) tail,capsid,transposase,integrase 3512964-3539438 0 18 13 0 72.2% 5 yes 6 PHAGE_Salmon_RE_2010_NC_019488(6),PHAGE_Salmon_Fels_2_NC_010463(6),PHAGE_Entero_PsP3_NC_005340(3),PHAGE_Salmon_SP_004_NC_021774(2),PHAGE_Clostr_c_st_NC_007581(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Erwini_ENT90_NC_019932(2),PHAGE_Bacill_phiNIT1_NC_021856(1),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Haemop_HP2_NC_003315(1),PHAGE_Cronob_CR8_NC_024354(1),PHAGE_Burkho_phi52237_NC_007145(1),PHAGE_Pseudo_OBP_NC_016571(1),PHAGE_Microc_Ma_LMM01_NC_008562(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Haemop_HP1_NC_001697(1),PHAGE_Burkho_KL3_NC_015266(1),PHAGE_Salmon_SEN1_NC_029003(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Pseudo_phi3_NC_030940(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Cronob_CR9_NC_023717(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Cronob_02_NC_028672(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Entero_P2_NC_001895(1),PHAGE_Entero_If1_NC_001954(1),PHAGE_Escher_pro483_NC_028943(1) 7 33.33% 54.71% 11 39.3Kb intact(150) transposase,portal,capsid,terminase,tail,lysin,plate 4572658-4612016 0 47 40 0 85.1% 7 yes 16 PHAGE_Entero_186_NC_001317(20),PHAGE_Escher_pro483_NC_028943(17),PHAGE_Entero_fiAA91_ss_NC_022750(16),PHAGE_Entero_WPhi_NC_005056(15),PHAGE_Salmon_SEN1_NC_029003(15),PHAGE_Yersin_L_413C_NC_004745(14),PHAGE_Entero_P2_NC_001895(14),PHAGE_Entero_PsP3_NC_005340(13),PHAGE_Escher_pro147_NC_028896(9),PHAGE_Salmon_SP_004_NC_021774(8),PHAGE_Salmon_Fels_2_NC_010463(7),PHAGE_Salmon_RE_2010_NC_019488(6),PHAGE_Erwini_ENT90_NC_019932(5),PHAGE_Vibrio_VHML_NC_004456(2),PHAGE_Salmon_SEN5_NC_028701(2),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Burkho_BcepMu_NC_005882(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Halocy_JM_2012_NC_017975(1),PHAGE_Pseudo_phi3_NC_030940(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Burkho_phiE255_NC_009237(1),PHAGE_Bordet_BPP_1_NC_005357(1) 17 42.55% 53.80% 12 33.9Kb intact(150) tail,plate,lysis,head,terminase,capsid,integrase 4624604-4658551 1 43 39 0 90.6% 4 yes 7 PHAGE_Salmon_RE_2010_NC_019488(33),PHAGE_Salmon_Fels_2_NC_010463(32),PHAGE_Erwini_ENT90_NC_019932(16),PHAGE_Entero_186_NC_001317(15),PHAGE_Entero_PsP3_NC_005340(10),PHAGE_Salmon_SEN1_NC_029003(10),PHAGE_Salmon_SP_004_NC_021774(4),PHAGE_Burkho_KS14_NC_015273(4),PHAGE_Ralsto_RSA1_NC_009382(3),PHAGE_Yersin_L_413C_NC_004745(3),PHAGE_Ralsto_RSY1_NC_025115(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Entero_WPhi_NC_005056(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Entero_P2_NC_001895(2),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Erwini_vB_EamP_Frozen_NC_031062(1),PHAGE_Burkho_BcepMu_NC_005882(1),PHAGE_Erwini_Ea9_2_NC_023579(1),PHAGE_Pseudo_PAJU2_NC_011373(1),PHAGE_Escher_pro147_NC_028896(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Halocy_JM_2012_NC_017975(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Staphy_StauST398_5_NC_023500(1),PHAGE_Pectob_PP90_NC_031096(1) 33 76.74% 54.71% 13 42.3Kb intact(110) transposase,integrase,head 5239454-5281807 0 30 15 0 50% 15 yes 12 PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Shigel_SHSML_45_NC_031022(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Ralsto_NP_2014_NC_023586(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_DT57C_NC_027356(1),PHAGE_Salmon_37_NC_029045(1),PHAGE_Ralsto_RSM1_NC_008574(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Staphy_DW2_NC_024391(1),PHAGE_Brevib_Sundance_NC_028749(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Clostr_phiMMP02_NC_019421(1),PHAGE_Salmon_118970_sal1_NC_031930(1),PHAGE_Escher_T5_NC_005859(1),PHAGE_Clostr_phiCD505_NC_028764(1),PHAGE_Salmon_FSLSP088_NC_021780(1),PHAGE_Clostr_phiCD146_NC_028958(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Vibrio_VHML_NC_004456(1),PHAGE_Ralsto_RSM3_NC_011399(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Staphy_StB27_NC_019914(1),PHAGE_Salmon_FSLSP030_NC_021779(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431(1),PHAGE_Vibrio_SIO_2_NC_016567(1),PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) 3 6.66% 51.47%