Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 8 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 38.9Kb incomplete(60) integrase,transposase 1464825-1503768 0 34 26 0 76.4% 8 yes 12 PHAGE_Escher_phiV10_NC_007804(11),PHAGE_Salmon_SPN1S_NC_016761(11),PHAGE_Salmon_epsilon15_NC_004775(11),PHAGE_Entero_Tyrion_NC_031077(10),PHAGE_Escher_TL_2011b_NC_019445(6),PHAGE_Entero_P4_NC_001609(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Bacill_1_NC_009737(2),PHAGE_Geobac_GBSV1_NC_008376(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Staphy_42E_NC_007052(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Thermu_phiYS40_NC_008584(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Myxoco_Mx8_NC_003085(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Haemop_Aaphi23_NC_004827(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Marino_P12026_NC_018269(1),PHAGE_Thermu_OH2_NC_021784(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Clostr_phiCT19406B_NC_030947(1),PHAGE_Gordon_ClubL_NC_030901(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Gordon_Bachita_NC_030936(1),PHAGE_Gordon_Smoothie_NC_030696(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Clostr_phiCTC2B_NC_030951(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Caulob_Cr30_NC_025422(1),PHAGE_Bacill_SPP1_NC_004166(1),PHAGE_Halovi_HGTV_1_NC_021328(1),PHAGE_Mycoba_Butters_NC_021061(1),PHAGE_Thermu_TMA_NC_015937(1),PHAGE_Thermo_THSA_485A_NC_018264(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Vibrio_X29_NC_024369(1) 12 32.35% 55.38% 2 22.5Kb questionable(70) transposase 1734479-1757038 0 19 8 0 42.1% 11 yes 5 PHAGE_Entero_933W_NC_000924(2),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Spirop_1_C74_NC_003793(1),PHAGE_Stx2_II_NC_004914(1) 3 10.52% 48.38% 3 11.4Kb intact(100) transposase,tail,lysin 1897775-1909180 0 18 12 0 66.6% 6 no 4 PHAGE_Escher_phiV10_NC_007804(5),PHAGE_Entero_Tyrion_NC_031077(4),PHAGE_Salmon_SPN1S_NC_016761(4),PHAGE_Salmon_epsilon15_NC_004775(4),PHAGE_Escher_TL_2011b_NC_019445(3),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Klebsi_0507_KN2_1_NC_022343(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Clostr_phiCD211_NC_029048(1) 6 27.77% 51.80% 4 55.4Kb intact(140) integrase,terminase,head,capsid,tail 2269179-2324611 0 52 40 0 76.9% 12 yes 19 PHAGE_Entero_HK140_NC_019710(12),PHAGE_Entero_HK022_NC_002166(11),PHAGE_Entero_mEp235_NC_019708(9),PHAGE_Pseudo_PMG1_NC_016765(8),PHAGE_Pseudo_PAJU2_NC_011373(8),PHAGE_Salmon_Fels_1_NC_010391(7),PHAGE_Entero_phiP27_NC_003356(7),PHAGE_Entero_mEpX2_NC_019705(7),PHAGE_Pseudo_D3_NC_002484(5),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Pseudo_phi297_NC_016762(3),PHAGE_Endosy_APSE_1_NC_000935(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_phi80_NC_021190(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Entero_HK97_NC_002167(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Bacter_APSE_2_NC_011551(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Synech_S_WAM2_NC_031935(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Persic_P12024S_NC_018271(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Pseudo_YMC11/06/C171_PPU_BP_NC_030923(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Rhodob_RcapMu_NC_016165(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Xantho_Xp10_NC_004902(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Pectob_PP90_NC_031096(1),PHAGE_Shigel_Stx_NC_029120(1) 12 23.07% 54.32% 5 13.3Kb questionable(70) transposase,tail,protease 3244192-3257565 0 17 10 0 58.8% 7 no 8 PHAGE_Salmon_IME207_NC_031924(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Staphy_PVL_NC_002321(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Staphy_SA12_NC_021801(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Staphy_StauST398_4_NC_023499(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Staphy_TEM123_NC_017968(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Staphy_tp310_1_NC_009761(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Vibrio_pYD38_A_NC_021534(1) 2 11.76% 52.08% 6 7.3Kb incomplete(30) head,transposase 3279081-3286388 0 8 6 0 75% 2 no 6 PHAGE_Vibrio_12B8_NC_021073(2),PHAGE_Pseudo_OBP_NC_016571(2),PHAGE_Colwel_9A_NC_018088(2),PHAGE_Staphy_phiIPLA_RODI_NC_028765(1),PHAGE_Synech_S_CAM9_NC_031922(1),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Staphy_S25_4_NC_022918(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Erwini_Ea35_70_NC_023557(1),PHAGE_Cyanop_S_RIM50_NC_031242(1),PHAGE_Entero_phiEcoM_GJ1_NC_010106(1),PHAGE_Staphy_GH15_NC_019448(1),PHAGE_Staphy_S25_3_NC_022920(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Staphy_JD007_NC_019726(1),PHAGE_Escher_121Q_NC_025447(1) 1 25% 56.21% 7 105.5Kb intact(150) tail,virion,capsid,head,integrase,transposase,lysis,protease,terminase 3372765-3478313 4 114 80 0 70.1% 34 yes 42 PHAGE_Pectob_ZF40_NC_019522(12),PHAGE_Burkho_BcepC6B_NC_005887(11),PHAGE_Escher_phiV10_NC_007804(9),PHAGE_Salmon_SPN1S_NC_016761(8),PHAGE_Salmon_epsilon15_NC_004775(8),PHAGE_Endosy_APSE_1_NC_000935(7),PHAGE_Bordet_BPP_1_NC_005357(7),PHAGE_Bacter_APSE_2_NC_011551(7),PHAGE_Entero_Tyrion_NC_031077(6),PHAGE_Pelagi_HTVC010P_NC_020481(6),PHAGE_Escher_TL_2011b_NC_019445(6),PHAGE_Xylell_Xfas53_NC_013599(5),PHAGE_Entero_VT2phi_272_NC_028656(5),PHAGE_Vibrio_VP5_NC_005891(4),PHAGE_Pseudo_AF_NC_019923(4),PHAGE_Salmon_118970_sal3_NC_031940(4),PHAGE_Escher_PA2_NC_028449(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Entero_mEp460_NC_019716(3),PHAGE_Vibrio_QH_NC_027397(3),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(3),PHAGE_Vibrio_VP2_NC_005879(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Entero_Sf101_NC_027398(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Vibrio_J2_NC_027393(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Burkho_BcepIL02_NC_012743(2),PHAGE_Bacill_phBC6A51_NC_004820(2),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431(2),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Burkho_BcepMigl_NC_019917(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Liberi_SC1_NC_019549(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Entero_phiFL4A_NC_013644(2),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(1),PHAGE_Entero_T7_NC_001604(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Salmon_SE2_NC_016763(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Escher_64795_ec1_NC_031114(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Loktan_pCB2051_A_NC_020853(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Escher_80001_NC_027387(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Staphy_B236_NC_028915(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Pectob_PM1_NC_023865(1),PHAGE_Delfti_RG_2014_NC_027348(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Crocei_P2559Y_NC_023614(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Lactob_CL2_NC_028835(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Sphing_PAU_NC_019521(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Salmon_BP12B_NC_031271(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Achrom_JWF_NC_029075(1),PHAGE_Pseudo_PS_1_NC_029066(1),PHAGE_Entero_EFRM31_NC_015270(1),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Escher_K1_dep(4)_NC_027993(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Strept_phiARI0131_1_NC_031901(1),PHAGE_Entero_SANTOR1_NC_031051(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Salmon_L13_NC_021317(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Lactob_PLE2_NC_031036(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Entero_SP6_NC_004831(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Staphy_88_NC_007063(1),PHAGE_Staphy_2638A_NC_007051(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Entero_13a_NC_011045(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Staphy_Ipla5_NC_018281(1),PHAGE_Vibrio_phiVC8_NC_027118(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Ralsto_RSB1_NC_011201(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Entero_UAB_Phi78_NC_020414(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Liberi_SC2_NC_019550(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Lactob_iA2_NC_028830(1),PHAGE_Mycoba_Enkosi_NC_028936(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Entero_K1_5_NC_008152(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Salmon_SSE_121_NC_027351(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Vibrio_phi_A318_NC_025822(1),PHAGE_Shigel_Stx_NC_029120(1) 14 10.52% 53.02% 8 24.6Kb incomplete(30) transposase 3624348-3649041 1 30 28 0 93.3% 2 no 8 PHAGE_Entero_Tyrion_NC_031077(18),PHAGE_Escher_phiV10_NC_007804(18),PHAGE_Escher_TL_2011b_NC_019445(14),PHAGE_Salmon_SPN1S_NC_016761(11),PHAGE_Salmon_epsilon15_NC_004775(10),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Deftia_phiW_14_NC_013697(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Erwini_Era103_NC_009014(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Pseudo_phi297_NC_016762(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Delfti_RG_2014_NC_027348(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Erwini_phiEa100_NC_019926(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Pseudo_AF_NC_019923(1) 19 60% 55.03% 9 60.8Kb intact(150) transposase,tail,head,lysin,integrase 3716545-3777378 1 81 65 0 80.2% 16 yes 36 PHAGE_Cronob_ENT47670_NC_019927(15),PHAGE_Vibrio_pYD38_A_NC_021534(10),PHAGE_Salmon_64795_sal3_NC_031918(9),PHAGE_Salmon_SPN3UB_NC_019545(8),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(7),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(7),PHAGE_Salmon_II_E1_NC_010495(7),PHAGE_Salmon_IME207_NC_031924(6),PHAGE_Phage_Gifsy_1_NC_010392(5),PHAGE_Cronob_phiES15_NC_018454(5),PHAGE_Entero_mEpX1_NC_019709(4),PHAGE_Entero_HK225_NC_019717(4),PHAGE_Entero_ES18_NC_006949(4),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Entero_ST104_NC_005841(4),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Entero_HK97_NC_002167(3),PHAGE_Salmon_ST64T_NC_004348(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Salmon_118970_sal4_NC_030919(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Entero_HK140_NC_019710(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Salmon_SEN22_NC_028696(3),PHAGE_Sinorh_phiLM21_NC_029046(3),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(2),PHAGE_Entero_mEp235_NC_019708(2),PHAGE_Pseudo_YMC11/02/R656_NC_028657(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Salmon_SE1_NC_011802(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Entero_HK022_NC_002166(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Entero_c_1_NC_019706(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Entero_mEpX2_NC_019705(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Klebsi_0507_KN2_1_NC_022343(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Entero_P22_NC_002371(1),PHAGE_Deftia_phiW_14_NC_013697(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Klebsi_vB_KpnP_KpV41_NC_028670(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Delfti_RG_2014_NC_027348(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Salmon_7_11_NC_015938(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Shewan_3/49_NC_025466(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Vibrio_pYD21_A_NC_020846(1),PHAGE_Salmon_Marshall_NC_022772(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Pseudo_H103_NC_028819(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Entero_Arya_NC_031048(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Shigel_Stx_NC_029120(1) 15 18.51% 51.97% 10 9Kb incomplete(50) protease,transposase,lysin 4610972-4620057 1 11 9 0 81.8% 2 no 9 PHAGE_Entero_933W_NC_000924(2),PHAGE_Salisa_1_NC_017983(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Cyanop_PSS2_NC_013021(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Helico_1961P_NC_019512(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Synech_S_CBS1_NC_016164(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Entero_GEC_3S_NC_025425(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Synech_S_CBS3_NC_015465(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Bacill_JBP901_NC_027352(1),PHAGE_Helico_KHP30_NC_019928(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Helico_KHP40_NC_019931(1),PHAGE_Helico_phiHP33_NC_016568(1),PHAGE_Pelagi_HTVC008M_NC_020484(1) 1 18.18% 53.53% 11 54Kb intact(120) integrase,tail,coat,head,portal,terminase 4656460-4710517 0 59 45 0 76.2% 14 yes 28 PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(6),PHAGE_Pseudo_phiPSA1_NC_024365(6),PHAGE_Escher_HK639_NC_016158(6),PHAGE_Salmon_Fels_1_NC_010391(6),PHAGE_Pseudo_PS_1_NC_029066(6),PHAGE_Pseudo_YMC11/02/R656_NC_028657(5),PHAGE_Acinet_Bphi_B1251_NC_019541(5),PHAGE_Entero_phiP27_NC_003356(5),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Pseudo_PAJU2_NC_011373(4),PHAGE_Bacter_APSE_2_NC_011551(3),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(3),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(3),PHAGE_Entero_UAB_Phi20_NC_031019(3),PHAGE_Entero_P22_NC_002371(2),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(2),PHAGE_Endosy_APSE_1_NC_000935(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Pseudo_D3_NC_002484(2),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Entero_ES18_NC_006949(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Shigel_SfIV_NC_022749(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Entero_c_1_NC_019706(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Mycoba_32HC_NC_023602(1),PHAGE_Escher_K1_dep(4)_NC_027993(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Gordon_Bowser_NC_030930(1),PHAGE_Thermu_P2345_NC_009803(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Thermu_P7426_NC_009804(1),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1),PHAGE_Bacill_vB_BhaS_171_NC_030904(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Staphy_SpaA1_NC_018277(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Pseudo_YMC11/06/C171_PPU_BP_NC_030923(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Edward_eiAU_183_NC_023555(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Clostr_PhiS63_NC_017978(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Mycoba_Charlie_NC_023729(1),PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1),PHAGE_Vibrio_SHOU24_NC_023569(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Mycoba_Phrann_NC_031266(1),PHAGE_Pseudo_JBD18_NC_027986(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Clostr_phiCT9441A_NC_029022(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Pectob_PP90_NC_031096(1) 6 10.16% 51.41% 12 30.9Kb intact(150) transposase,capsid,terminase,head,tail,lysis,plate 4761999-4792904 0 41 34 0 82.9% 7 no 8 PHAGE_Salmon_RE_2010_NC_019488(24),PHAGE_Salmon_Fels_2_NC_010463(23),PHAGE_Erwini_ENT90_NC_019932(11),PHAGE_Entero_186_NC_001317(10),PHAGE_Salmon_SP_004_NC_021774(5),PHAGE_Entero_fiAA91_ss_NC_022750(5),PHAGE_Ralsto_RSA1_NC_009382(4),PHAGE_Burkho_KS14_NC_015273(4),PHAGE_Entero_PsP3_NC_005340(3),PHAGE_Salmon_SEN1_NC_029003(3),PHAGE_Ralsto_RSY1_NC_025115(3),PHAGE_Entero_P2_NC_001895(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Synech_ACG_2014j_NC_026926(2),PHAGE_Rhodob_RcapMu_NC_016165(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Persic_P12024L_NC_018272(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Burkho_KL3_NC_015266(1),PHAGE_Pseudo_PAJU2_NC_011373(1),PHAGE_Escher_pro147_NC_028896(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Burkho_KS5_NC_015265(1),PHAGE_Persic_P12024S_NC_018271(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Pectob_PP90_NC_031096(1) 25 58.53% 54.96% 13 51.3Kb intact(150) lysis,lysin,terminase,portal,capsid,coat,head,tail,integrase 5268001-5319330 0 59 52 0 88.1% 7 yes 34 PHAGE_Salmon_118970_sal4_NC_030919(10),PHAGE_Entero_mEp237_NC_019704(10),PHAGE_Salmon_103203_sal5_NC_031946(9),PHAGE_Salmon_SPN3UB_NC_019545(7),PHAGE_Salmon_SEN34_NC_028699(7),PHAGE_Phage_Gifsy_1_NC_010392(6),PHAGE_Entero_Sf101_NC_027398(6),PHAGE_Entero_UAB_Phi20_NC_031019(6),PHAGE_Shigel_Sf6_NC_005344(5),PHAGE_Endosy_APSE_1_NC_000935(5),PHAGE_Entero_IME10_NC_019501(5),PHAGE_Phage_Gifsy_2_NC_010393(5),PHAGE_Bacter_APSE_2_NC_011551(5),PHAGE_Salmon_SEN22_NC_028696(5),PHAGE_Salmon_HK620_NC_002730(4),PHAGE_Stx2_II_NC_004914(4),PHAGE_Entero_VT2_Sakai_NC_000902(4),PHAGE_Salmon_ST160_NC_014900(4),PHAGE_Escher_PA2_NC_028449(3),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Sodali_phiSG1_NC_007902(3),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Salmon_SPN9CC_NC_017985(3),PHAGE_Entero_mEp460_NC_019716(3),PHAGE_Shigel_SfII_NC_021857(3),PHAGE_Salmon_ST64T_NC_004348(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Entero_HK140_NC_019710(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Salmon_epsilon34_NC_011976(3),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Salmon_g341c_NC_013059(2),PHAGE_Salmon_epsilon15_NC_004775(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Bacill_Pony_NC_022770(1),PHAGE_Haemop_Aaphi23_NC_004827(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Escher_EC6_NC_027369(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Achrom_JWAlpha_NC_023556(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Bacill_Page_NC_022764(1),PHAGE_Iodoba_phiPLPE_NC_011142(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Burkho_phi52237_NC_007145(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Pseudo_phi297_NC_016762(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(1),PHAGE_Ralsto_RSK1_NC_022915(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Salmon_NR01_NC_031042(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Escher_HY02_NC_028872(1),PHAGE_Sinorh_phiLM21_NC_029046(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Pseudo_PS_1_NC_029066(1),PHAGE_Shigel_Stx_NC_029120(1) 5 16.94% 53.88% 14 26.6Kb intact(100) transposase 5461461-5488060 0 35 23 0 65.7% 12 no 16 PHAGE_Klebsi_phiKO2_NC_005857(3),PHAGE_Sodali_phiSG1_NC_007902(3),PHAGE_Entero_N15_NC_001901(3),PHAGE_Entero_P1_NC_005856(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Salmon_Fels_2_NC_010463(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Strept_phiARI0004_NC_031920(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Gordon_Nyceirae_NC_031004(1),PHAGE_Thermu_OH2_NC_021784(1),PHAGE_Mycoba_Theia_NC_028960(1),PHAGE_Strept_phiARI0460_1_NC_031913(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(1),PHAGE_Mycoba_UnionJack_NC_028802(1),PHAGE_Rhodoc_CosmicSans_NC_028677(1),PHAGE_Salmon_SEN1_NC_029003(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Rhodoc_RGL3_NC_016650(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Rhodoc_RER2_NC_016653(1),PHAGE_Burkho_phiE12_2_NC_009236(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Gordon_Hedwig_NC_031099(1),PHAGE_Staphy_vB_SepS_SEP9_NC_023582(1),PHAGE_Rhodov_vB_RhkS_P1_NC_031059(1),PHAGE_Staphy_Stau2_NC_030933(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Escher_pro483_NC_028943(1) 5 8.57% 53.90%