Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 8 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 21.7Kb intact(150) terminase,head,capsid,tail 1058-22831 0 32 27 0 84.3% 5 no 9 PHAGE_Entero_HK022_NC_002166(12),PHAGE_Entero_HK140_NC_019710(12),PHAGE_Pseudo_PMG1_NC_016765(10),PHAGE_Entero_mEp235_NC_019708(9),PHAGE_Entero_mEpX2_NC_019705(8),PHAGE_Pseudo_PAJU2_NC_011373(7),PHAGE_Pseudo_D3_NC_002484(6),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Entero_HK544_NC_019767(3),PHAGE_Pseudo_phi297_NC_016762(3),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(3),PHAGE_Escher_HK75_NC_016160(3),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Escher_Seurat_NC_027378(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Synech_S_WAM2_NC_031935(1),PHAGE_Persic_P12024L_NC_018272(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Pseudo_JBD44_NC_030929(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Persic_P12024S_NC_018271(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Escher_slur01_NC_028831(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Shigel_SfII_NC_021857(1) 14 37.5% 51.63% 2 48.1Kb intact(140) tail,head,capsid,terminase,integrase 119463-167564 0 57 43 0 75.4% 14 yes 23 PHAGE_Entero_HK140_NC_019710(11),PHAGE_Entero_HK022_NC_002166(10),PHAGE_Entero_mEp235_NC_019708(8),PHAGE_Pseudo_PMG1_NC_016765(8),PHAGE_Salmon_Fels_1_NC_010391(7),PHAGE_Entero_phiP27_NC_003356(7),PHAGE_Pseudo_PAJU2_NC_011373(7),PHAGE_Entero_mEpX2_NC_019705(7),PHAGE_Pseudo_D3_NC_002484(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_HK544_NC_019767(3),PHAGE_Endosy_APSE_1_NC_000935(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_phi80_NC_021190(2),PHAGE_Escher_HK75_NC_016160(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Bacter_APSE_2_NC_011551(2),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_BP_4795_NC_004813(2),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Synech_S_CRM01_NC_015569(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Strept_SM1_NC_004996(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Synech_S_WAM2_NC_031935(1),PHAGE_Persic_P12024L_NC_018272(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Persic_P12024S_NC_018271(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Pseudo_YMC11/06/C171_PPU_BP_NC_030923(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Xantho_Xp10_NC_004902(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Pantoe_LIMElight_NC_019454(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Shigel_Stx_NC_029120(1),PHAGE_Pectob_PP90_NC_031096(1) 11 19.29% 52.90% 3 60.9Kb intact(120) tail,lysis,capsid,protease,head,terminase,integrase 293710-354708 3 60 41 0 68.3% 19 yes 24 PHAGE_Pectob_ZF40_NC_019522(12),PHAGE_Escher_phiV10_NC_007804(9),PHAGE_Salmon_SPN1S_NC_016761(7),PHAGE_Salmon_epsilon15_NC_004775(7),PHAGE_Entero_Tyrion_NC_031077(6),PHAGE_Burkho_BcepC6B_NC_005887(5),PHAGE_Escher_TL_2011b_NC_019445(4),PHAGE_Burkho_BcepIL02_NC_012743(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Entero_mEp460_NC_019716(3),PHAGE_Bordet_BPP_1_NC_005357(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(3),PHAGE_Pelagi_HTVC010P_NC_020481(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Burkho_Bcep22_NC_005262(2),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Bacill_phBC6A51_NC_004820(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Salmon_SPN9CC_NC_017985(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Burkho_DC1_NC_018452(2),PHAGE_Pseudo_AF_NC_019923(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Vibrio_VP5_NC_005891(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Vibrio_VP2_NC_005879(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Lactob_PLE2_NC_031036(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Staphy_Ipla5_NC_018281(1),PHAGE_Vibrio_phiVC8_NC_027118(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Staphy_B236_NC_028915(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Liberi_SC1_NC_019549(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Liberi_SC2_NC_019550(1),PHAGE_Lactob_iA2_NC_028830(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Lactob_CL2_NC_028835(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Vibrio_QH_NC_027397(1),PHAGE_Bacill_SPbeta_NC_001884(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Sphing_PAU_NC_019521(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Pseudo_PS_1_NC_029066(1) 12 20% 51.75% 4 24.6Kb incomplete(30) transposase 463418-488111 1 29 27 0 93.1% 2 no 8 PHAGE_Entero_Tyrion_NC_031077(18),PHAGE_Escher_phiV10_NC_007804(18),PHAGE_Escher_TL_2011b_NC_019445(14),PHAGE_Salmon_SPN1S_NC_016761(11),PHAGE_Salmon_epsilon15_NC_004775(10),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Deftia_phiW_14_NC_013697(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Erwini_Era103_NC_009014(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Pseudo_phi297_NC_016762(1),PHAGE_Pseudo_phi2_NC_030931(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Bordet_BPP_1_NC_005357(1),PHAGE_Delfti_RG_2014_NC_027348(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Erwini_phiEa100_NC_019926(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Pseudo_AF_NC_019923(1) 18 62.06% 55.02% 5 11.4Kb intact(100) lysin,tail,transposase 679323-690724 0 17 12 0 70.5% 5 no 4 PHAGE_Escher_phiV10_NC_007804(5),PHAGE_Entero_Tyrion_NC_031077(4),PHAGE_Salmon_SPN1S_NC_016761(4),PHAGE_Salmon_epsilon15_NC_004775(4),PHAGE_Escher_TL_2011b_NC_019445(3),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Klebsi_0507_KN2_1_NC_022343(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Salmon_IME207_NC_031924(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Clostr_phiCD211_NC_029048(1) 6 29.41% 51.77% 6 22.5Kb questionable(70) transposase 831479-854035 0 19 8 0 42.1% 11 yes 5 PHAGE_Entero_933W_NC_000924(2),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Spirop_1_C74_NC_003793(1),PHAGE_Stx2_II_NC_004914(1) 3 10.52% 48.40% 7 38.9Kb incomplete(60) integrase,transposase 1085045-1123990 0 34 26 0 76.4% 8 yes 12 PHAGE_Escher_phiV10_NC_007804(11),PHAGE_Salmon_SPN1S_NC_016761(11),PHAGE_Salmon_epsilon15_NC_004775(11),PHAGE_Entero_Tyrion_NC_031077(10),PHAGE_Escher_TL_2011b_NC_019445(6),PHAGE_Entero_P4_NC_001609(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Bacill_1_NC_009737(2),PHAGE_Geobac_GBSV1_NC_008376(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Staphy_42E_NC_007052(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Thermu_phiYS40_NC_008584(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Myxoco_Mx8_NC_003085(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Haemop_Aaphi23_NC_004827(1),PHAGE_Marino_P12026_NC_018269(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Thermu_OH2_NC_021784(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Clostr_phiCT19406B_NC_030947(1),PHAGE_Gordon_ClubL_NC_030901(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Gordon_Bachita_NC_030936(1),PHAGE_Gordon_Smoothie_NC_030696(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Clostr_phiCTC2B_NC_030951(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Caulob_Cr30_NC_025422(1),PHAGE_Bacill_SPP1_NC_004166(1),PHAGE_Halovi_HGTV_1_NC_021328(1),PHAGE_Mycoba_Butters_NC_021061(1),PHAGE_Thermu_TMA_NC_015937(1),PHAGE_Thermo_THSA_485A_NC_018264(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Vibrio_X29_NC_024369(1) 12 32.35% 55.38% 8 44.3Kb intact(150) transposase,tail,plate,lysis,head,terminase,capsid,integrase 3207637-3252032 0 54 43 0 79.6% 11 yes 12 PHAGE_Salmon_RE_2010_NC_019488(24),PHAGE_Salmon_Fels_2_NC_010463(23),PHAGE_Erwini_ENT90_NC_019932(11),PHAGE_Entero_186_NC_001317(9),PHAGE_Ralsto_RSA1_NC_009382(5),PHAGE_Salmon_SP_004_NC_021774(5),PHAGE_Entero_fiAA91_ss_NC_022750(5),PHAGE_Ralsto_RSY1_NC_025115(4),PHAGE_Burkho_KS14_NC_015273(4),PHAGE_Entero_PsP3_NC_005340(3),PHAGE_Shigel_SfII_NC_021857(3),PHAGE_Entero_P2_NC_001895(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Salmon_SEN1_NC_029003(2),PHAGE_Synech_ACG_2014j_NC_026926(2),PHAGE_Burkho_KS5_NC_015265(2),PHAGE_Mycoba_Charlie_NC_023729(1),PHAGE_Rhodob_RcapMu_NC_016165(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_WPhi_NC_005056(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Thermu_OH2_NC_021784(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Persic_P12024L_NC_018272(1),PHAGE_Mycoba_Carcharodon_NC_028779(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Burkho_KL3_NC_015266(1),PHAGE_Pseudo_PAJU2_NC_011373(1),PHAGE_Escher_pro147_NC_028896(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Persic_P12024S_NC_018271(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Bacill_250_NC_029024(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Mycoba_Xeno_NC_031243(1),PHAGE_Pectob_PP90_NC_031096(1) 25 44.44% 54.33% 9 9Kb incomplete(50) lysin,transposase,protease 3271311-3280396 1 11 9 0 81.8% 2 no 9 PHAGE_Entero_933W_NC_000924(2),PHAGE_Salisa_1_NC_017983(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Cyanop_PSS2_NC_013021(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Helico_1961P_NC_019512(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Synech_S_CBS1_NC_016164(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Entero_GEC_3S_NC_025425(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Synech_S_CBS3_NC_015465(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Bacill_JBP901_NC_027352(1),PHAGE_Helico_KHP30_NC_019928(1),PHAGE_Entero_VT2_Sakai_NC_000902(1),PHAGE_Pelagi_HTVC008M_NC_020484(1),PHAGE_Helico_KHP40_NC_019931(1),PHAGE_Helico_phiHP33_NC_016568(1),PHAGE_Entero_phiP27_NC_003356(1) 1 18.18% 53.53% 10 80.2Kb intact(150) integrase,tail,coat,head,portal,terminase,capsid,lysin,lysis 3499467-3579700 0 114 94 0 82.4% 20 yes 54 PHAGE_Salmon_103203_sal5_NC_031946(10),PHAGE_Entero_mEp237_NC_019704(10),PHAGE_Salmon_118970_sal4_NC_030919(10),PHAGE_Escher_HK639_NC_016158(9),PHAGE_Salmon_SPN3UB_NC_019545(8),PHAGE_Entero_Sf101_NC_027398(8),PHAGE_Entero_UAB_Phi20_NC_031019(8),PHAGE_Salmon_Fels_1_NC_010391(7),PHAGE_Pseudo_PS_1_NC_029066(7),PHAGE_Salmon_SEN34_NC_028699(7),PHAGE_Phage_Gifsy_1_NC_010392(6),PHAGE_Entero_IME10_NC_019501(6),PHAGE_Pseudo_phiPSA1_NC_024365(6),PHAGE_Pseudo_YMC11/02/R656_NC_028657(6),PHAGE_Salmon_SEN22_NC_028696(6),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(6),PHAGE_Stx2_vB_EcoP_24B_NC_027984(6),PHAGE_Entero_BP_4795_NC_004813(5),PHAGE_Acinet_Bphi_B1251_NC_019541(5),PHAGE_Pseudo_phi297_NC_016762(5),PHAGE_Entero_phiP27_NC_003356(5),PHAGE_Entero_933W_NC_000924(5),PHAGE_Shigel_Sf6_NC_005344(5),PHAGE_Phage_Gifsy_2_NC_010393(5),PHAGE_Salmon_HK620_NC_002730(5),PHAGE_Stx2_II_NC_004914(5),PHAGE_Entero_VT2_Sakai_NC_000902(5),PHAGE_Bacter_APSE_2_NC_011551(5),PHAGE_Salmon_epsilon34_NC_011976(5),PHAGE_Entero_HK140_NC_019710(4),PHAGE_Salmon_g341c_NC_013059(4),PHAGE_Endosy_APSE_1_NC_000935(4),PHAGE_Entero_phi80_NC_021190(4),PHAGE_Cronob_phiES15_NC_018454(4),PHAGE_Shigel_SfII_NC_021857(4),PHAGE_Shigel_SfIV_NC_022749(4),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(4),PHAGE_Pseudo_PAJU2_NC_011373(4),PHAGE_Entero_c_1_NC_019706(4),PHAGE_Salmon_ST160_NC_014900(4),PHAGE_Entero_P22_NC_002371(3),PHAGE_Escher_PA2_NC_028449(3),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Entero_mEp460_NC_019716(3),PHAGE_Entero_cdtI_NC_009514(3),PHAGE_Salmon_ST64T_NC_004348(3),PHAGE_Salmon_SE1_NC_011802(3),PHAGE_Entero_lambda_NC_001416(3),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Salmon_SPN9CC_NC_017985(3),PHAGE_Shigel_Ss_VASD_NC_028685(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Entero_SfI_NC_027339(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Escher_TL_2011c_NC_019442(2),PHAGE_Gordon_Bowser_NC_030930(2),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Pseudo_D3_NC_002484(2),PHAGE_Entero_ES18_NC_006949(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Salmon_epsilon15_NC_004775(2),PHAGE_Escher_D108_NC_013594(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Entero_mEpX1_NC_019709(1),PHAGE_Haemop_Aaphi23_NC_004827(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Bacill_phiCM3_NC_023599(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Pseudo_PAE1_NC_028980(1),PHAGE_Rhizob_vB_RglS_P106B_NC_023566(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Vibrio_SHOU24_NC_023569(1),PHAGE_Iodoba_phiPLPE_NC_011142(1),PHAGE_Bacill_Page_NC_022764(1),PHAGE_Rhodoc_ReqiDocB7_NC_023706(1),PHAGE_Burkho_phi52237_NC_007145(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_NR01_NC_031042(1),PHAGE_Stx2_c_86_NC_008464(1),PHAGE_Pseudo_JBD18_NC_027986(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Pseudo_M6_NC_007809(1),PHAGE_Pectob_PP90_NC_031096(1),PHAGE_Escher_K1_dep(4)_NC_027993(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Thermu_P2345_NC_009803(1),PHAGE_Bacill_Pony_NC_022770(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Thermu_P7426_NC_009804(1),PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Escher_EC6_NC_027369(1),PHAGE_Burkho_KS9_NC_013055(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Staphy_SpaA1_NC_018277(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Burkho_phiE125_NC_003309(1),PHAGE_Pseudo_YMC11/06/C171_PPU_BP_NC_030923(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Escher_K1_dep(1)_NC_027994(1),PHAGE_Edward_eiAU_183_NC_023555(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Entero_SfMu_NC_027382(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Achrom_JWAlpha_NC_023556(1),PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Salico_CGphi29_NC_020844(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Ralsto_RSK1_NC_022915(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Pectob_Peat1_NC_029081(1),PHAGE_Sinorh_phiLM21_NC_029046(1),PHAGE_Escher_HY02_NC_028872(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Idioma_Phi1M2_2_NC_025471(1),PHAGE_Shigel_Stx_NC_029120(1) 6 8.77% 52.22% 11 93.8Kb intact(150) transposase,integrase,lysin,portal,head,tail,terminase 4260734-4354580 3 131 113 0 86.2% 18 yes 43 PHAGE_Cronob_ENT47670_NC_019927(17),PHAGE_Vibrio_pYD38_A_NC_021534(11),PHAGE_Salmon_64795_sal3_NC_031918(10),PHAGE_Salmon_II_E1_NC_010495(9),PHAGE_Salmon_SPN3UB_NC_019545(9),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(8),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(8),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(7),PHAGE_Salmon_IME207_NC_031924(6),PHAGE_Phage_Gifsy_1_NC_010392(5),PHAGE_Pseudo_JBD44_NC_030929(5),PHAGE_Salmon_118970_sal4_NC_030919(5),PHAGE_Entero_HK022_NC_002166(5),PHAGE_Salmon_103203_sal5_NC_031946(4),PHAGE_Entero_mEp235_NC_019708(4),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Entero_mEp237_NC_019704(4),PHAGE_Salmon_SEN34_NC_028699(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Shigel_POCJ13_NC_025434(3),PHAGE_Salmon_HK620_NC_002730(3),PHAGE_Stx2_II_NC_004914(3),PHAGE_Entero_VT2_Sakai_NC_000902(3),PHAGE_Entero_ES18_NC_006949(3),PHAGE_Entero_lambda_NC_001416(3),PHAGE_Entero_VT2phi_272_NC_028656(3),PHAGE_Entero_HK140_NC_019710(3),PHAGE_Entero_HK633_NC_019719(3),PHAGE_Salmon_SEN22_NC_028696(3),PHAGE_Entero_mEpX2_NC_019705(3),PHAGE_Sinorh_phiLM21_NC_029046(3),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Escher_TL_2011b_NC_019445(2),PHAGE_Entero_IME10_NC_019501(2),PHAGE_Pseudo_YMC11/02/R656_NC_028657(2),PHAGE_Phage_Gifsy_2_NC_010393(2),PHAGE_Salmon_SPN9CC_NC_017985(2),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Bacill_G_NC_023719(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Salmon_vB_SemP_Emek_NC_018275(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_ST104_NC_005841(2),PHAGE_Entero_HK630_NC_019723(2),PHAGE_Salmon_epsilon34_NC_011976(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Klebsi_0507_KN2_1_NC_022343(1),PHAGE_Shigel_Sf6_NC_005344(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Entero_HK629_NC_019711(1),PHAGE_Bdello_phi1422_NC_019525(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Klebsi_vB_KpnP_KpV41_NC_028670(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Tetras_TJE1_NC_019930(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Salmon_7_11_NC_015938(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Pseudo_phi297_NC_016762(1),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1),PHAGE_Shewan_3/49_NC_025466(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Vibrio_pYD21_A_NC_020846(1),PHAGE_Salmon_Marshall_NC_022772(1),PHAGE_Pseudo_H103_NC_028819(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Entero_Arya_NC_031048(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Acinet_phiAC_1_NC_028995(1) 31 12.97% 52.76% 12 7.3Kb incomplete(30) transposase,head 4440964-4448277 0 8 6 0 75% 2 no 6 PHAGE_Pseudo_OBP_NC_016571(2),PHAGE_Colwel_9A_NC_018088(2),PHAGE_Vibrio_12B8_NC_021073(2),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Synech_S_CAM9_NC_031922(1),PHAGE_Staphy_phiIPLA_RODI_NC_028765(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Erwini_Ea35_70_NC_023557(1),PHAGE_Cyanop_S_RIM50_NC_031242(1),PHAGE_Entero_phiEcoM_GJ1_NC_010106(1),PHAGE_Staphy_S25_4_NC_022918(1),PHAGE_Staphy_GH15_NC_019448(1),PHAGE_Staphy_S25_3_NC_022920(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Staphy_JD007_NC_019726(1),PHAGE_Escher_121Q_NC_025447(1) 1 25% 56.18% 13 10.7Kb incomplete(60) transposase,tail 4473243-4484005 0 13 9 0 69.2% 4 no 7 PHAGE_Salmon_IME207_NC_031924(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Staphy_PVL_NC_002321(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Pseudo_F10_NC_007805(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Staphy_SA12_NC_021801(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Bacill_IEBH_NC_011167(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Staphy_StauST398_4_NC_023499(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Staphy_TEM123_NC_017968(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Staphy_tp310_1_NC_009761(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Vibrio_pYD38_A_NC_021534(1) 2 15.38% 51.83% 14 38.7Kb intact(120) lysin,terminase,portal,coat,head,injection,tail,integrase 4877600-4916299 1 57 52 0 91.2% 5 yes 30 PHAGE_Entero_Sf101_NC_027398(14),PHAGE_Shigel_Sf6_NC_005344(10),PHAGE_Salmon_HK620_NC_002730(8),PHAGE_Salmon_epsilon34_NC_011976(6),PHAGE_Stx2_c_1717_NC_011357(5),PHAGE_Salmon_vB_SemP_Emek_NC_018275(5),PHAGE_Entero_933W_NC_000924(5),PHAGE_Entero_UAB_Phi20_NC_031019(5),PHAGE_Entero_phi80_NC_021190(4),PHAGE_Entero_IME10_NC_019501(4),PHAGE_Entero_HK225_NC_019717(4),PHAGE_Entero_mEp460_NC_019716(4),PHAGE_Entero_VT2_Sakai_NC_000902(4),PHAGE_Salmon_SE1_NC_011802(4),PHAGE_Salmon_118970_sal4_NC_030919(4),PHAGE_Salmon_g341c_NC_013059(4),PHAGE_Salmon_ST160_NC_014900(4),PHAGE_Entero_ST104_NC_005841(4),PHAGE_Salmon_SEN22_NC_028696(4),PHAGE_Phage_Gifsy_1_NC_010392(3),PHAGE_Sodali_phiSG1_NC_007902(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Entero_HK97_NC_002167(3),PHAGE_Phage_Gifsy_2_NC_010393(3),PHAGE_Stx2_II_NC_004914(3),PHAGE_Escher_HK639_NC_016158(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Ralsto_RSK1_NC_022915(3),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Burkho_BcepIL02_NC_012743(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Burkho_BcepMigl_NC_019917(2),PHAGE_Burkho_AH2_NC_018283(2),PHAGE_Bacter_APSE_2_NC_011551(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(2),PHAGE_Salmon_SEN34_NC_028699(2),PHAGE_Entero_c_1_NC_019706(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Riemer_RAP44_NC_019490(1),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Entero_P22_NC_002371(1),PHAGE_Escher_Av_05_NC_025830(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Sinorh_PBC5_NC_003324(1),PHAGE_Deftia_phiW_14_NC_013697(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Escher_EC6_NC_027369(1),PHAGE_Pseudo_YMC11/02/R656_NC_028657(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Xantho_CP2_NC_020205(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Delfti_RG_2014_NC_027348(1),PHAGE_Acinet_LZ35_NC_031117(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Escher_pro483_NC_028943(1),PHAGE_Achrom_JWAlpha_NC_023556(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Klebsi_phiKO2_NC_005857(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Entero_lambda_NC_001416(1),PHAGE_Vibrio_VP882_NC_009016(1),PHAGE_Salmon_7_11_NC_015938(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Shewan_3/49_NC_025466(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Salmon_NR01_NC_031042(1),PHAGE_Pseudo_H103_NC_028819(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Escher_HY02_NC_028872(1),PHAGE_Sinorh_phiLM21_NC_029046(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Pseudo_PS_1_NC_029066(1) 14 24.56% 50.41%