Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1001816265

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|NZ_LPZI01000049.1| Escherichia coli strain CFSAN025137 5196-B_contig_144_93.86, whole 43227, gc%: 51.49%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.7Kbintact150298282-43051 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(23)51.83%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_LPZI01000049.1| Escherichia coli strain CFSAN025137 5196-B_contig_144_93.86, whole 43227, gc%: 51.49%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 31 CDS

#CDS PositionBLAST HitE-ValueSequence
2complement(20503..21483)PHAGE_Entero_fiAA91_ss_NC_022750: integrase; AUS44_RS04455; phage(gi557307610)0.0Showinfo_outline
3complement(21553..21846)PHAGE_Entero_fiAA91_ss_NC_022750: immunity repressor; AUS44_RS04460; phage(gi557307611)4.84e-33Showinfo_outline
421983..22255PHAGE_Escher_P2_NC_041848: hypothetical protein; AUS44_RS04465; phage(gi100003)2.48e-61Showinfo_outline
522425..22925PHAGE_Entero_WPhi_NC_005056: gpB; AUS44_RS04470; phage(gi33438931)1.23e-121Showinfo_outline
622989..23213PHAGE_Entero_fiAA91_ss_NC_022750: hypothetical protein; AUS44_RS04475; phage(gi557307617)3.20e-47Showinfo_outline
723213..23515PHAGE_Entero_fiAA91_ss_NC_022750: hypothetical protein; AUS44_RS04480; phage(gi557307616)1.79e-63Showinfo_outline
823515..23739PHAGE_Entero_fiAA91_ss_NC_022750: zinc finger protein; AUS44_RS04485; phage(gi557307615)1.17e-48Showinfo_outline
923736..24011PHAGE_Entero_fiAA91_ss_NC_022750: replication initiation protein; AUS44_RS04490; phage(gi557307618)4.46e-62Showinfo_outline
1024001..26280PHAGE_Entero_fiAA91_ss_NC_022750: DNA replication; AUS44_RS04495; phage(gi557307619)0.0Showinfo_outline
11complement(26520..29003)DEAD/DEAH box helicase family protein; AUS44_RS045000.0Showinfo_outline
12complement(29375..30409)PHAGE_Entero_fiAA91_ss_NC_022750: capsid portal protein; AUS44_RS04505; phage(gi557307585)0.0Showinfo_outline
13complement(30409..32181)PHAGE_Entero_fiAA91_ss_NC_022750: large terminase subunit; AUS44_RS04510; phage(gi557307593)0.0Showinfo_outline
1432355..33209PHAGE_Entero_fiAA91_ss_NC_022750: capsid scaffold; AUS44_RS04515; phage(gi557307586)0.0Showinfo_outline
1533268..34341PHAGE_Entero_fiAA91_ss_NC_022750: major capsid protein precursor; AUS44_RS04520; phage(gi557307587)0.0Showinfo_outline
1634345..35082PHAGE_Entero_fiAA91_ss_NC_022750: small terminase subunit; AUS44_RS04525; phage(gi557307590)1.44e-169Showinfo_outline
1735182..35691PHAGE_Entero_fiAA91_ss_NC_022750: capsid completion protein; AUS44_RS04530; phage(gi557307591)7.22e-121Showinfo_outline
1835691..35894PHAGE_Escher_pro483_NC_028943: tail completion protein; AUS44_RS04535; phage(gi971758519)2.35e-42Showinfo_outline
1935898..36179PHAGE_Entero_fiAA91_ss_NC_022750: holin; AUS44_RS04540; phage(gi557307594)5.16e-57Showinfo_outline
2036179..36676PHAGE_Entero_fiAA91_ss_NC_022750: lysozyme; AUS44_RS04545; phage(gi557307624)4.90e-121Showinfo_outline
2136691..37116PHAGE_Entero_fiAA91_ss_NC_022750: lysin; AUS44_RS04550; phage(gi557307595)9.49e-94Showinfo_outline
2237104..37529PHAGE_Entero_fiAA91_ss_NC_022750: lysin; AUS44_RS04555; phage(gi557307623)3.79e-94Showinfo_outline
2337637..38104PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; AUS44_RS04565; phage(gi557307596)3.41e-106Showinfo_outline
2438097..38549PHAGE_Entero_fiAA91_ss_NC_022750: tail completion protein; AUS44_RS04570; phage(gi557307589)8.26e-106Showinfo_outline
2538616..39251PHAGE_Entero_fiAA91_ss_NC_022750: baseplate protein; AUS44_RS04575; phage(gi557307597)8.06e-150Showinfo_outline
2739248..39595PHAGE_Entero_fiAA91_ss_NC_022750: putative baseplate protein; AUS44_RS04580; phage(gi557307598)6.00e-79Showinfo_outline
2839600..40508PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; AUS44_RS04585; phage(gi557307588)0.0Showinfo_outline
2940501..41112PHAGE_Entero_fiAA91_ss_NC_022750: baseplate assembly; AUS44_RS04590; phage(gi557307599)4.23e-103Showinfo_outline
3041109..42446PHAGE_Escher_pro483_NC_028943: tail fiber protein; AUS44_RS04595; phage(gi971758531)0.0Showinfo_outline
3142446..43051PHAGE_Escher_pro483_NC_028943: putative tail fiber assembly protein; AUS44_RS04600; phage(gi971758533)1.45e-122Showinfo_outline
Escherichia coli strain CFSAN025137 5196-B_contig_144_93
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 43227 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download