Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1005586158

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|NZ_LOMP01000090.1| Bacillus cereus strain FSL K6-0267 contig_36, whole genome shotgun 48608, gc%: 34.49%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
128.7Kbintact120301-28753 info_outlinePHAGE_Bacill_BtCS33_NC_018085(17)36.81%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_LOMP01000090.1| Bacillus cereus strain FSL K6-0267 contig_36, whole genome shotgun 48608, gc%: 34.49%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 32 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1..393)PHAGE_Bacill_phBC6A52_NC_004821: Collagen triple helix repeat protein; AT269_RS16140; phage(gi31415834)2.80e-20Showinfo_outline
21909..2031PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; AT269_RS28755; phage(gi77020188)2.12e-05Showinfo_outline
32052..2240PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; AT269_RS16145; phage(gi31415837)5.37e-35Showinfo_outline
52339..2509PHAGE_Bacill_PfEFR_5_NC_031055: dihydrofolate reductase; AT269_RS29895; phage(gi100060)5.19e-18Showinfo_outline
62537..3019PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; AT269_RS16150; phage(gi422934318)6.71e-97Showinfo_outline
73019..3561PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; AT269_RS16155; phage(gi422934319)3.07e-115Showinfo_outline
84003..5928PHAGE_Verruc_P8625_NC_029047: tail fiber protein; AT269_RS16160; phage(gi981221130)6.65e-26Showinfo_outline
96379..7014hypothetical protein; AT269_RS299000.0Showinfo_outline
107422..7676PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; AT269_RS16170; phage(gi589892710)8.27e-30Showinfo_outline
117816..8034PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; AT269_RS16175; phage(gi971821610)1.08e-26Showinfo_outline
128041..8295PHAGE_Bacill_phIS3501_NC_019502: phage protein; AT269_RS16180; phage(gi422934325)1.02e-50Showinfo_outline
138285..8662PHAGE_Bacill_phIS3501_NC_019502: HNH endonuclease domain protein; AT269_RS16185; phage(gi422934326)6.55e-84Showinfo_outline
148791..9294PHAGE_Bacill_phIS3501_NC_019502: terminase small subunit; AT269_RS16190; phage(gi422934327)1.36e-111Showinfo_outline
159296..10990PHAGE_Bacill_phIS3501_NC_019502: terminase large subunit; AT269_RS16195; phage(gi422934328)0.0Showinfo_outline
1611179..12432PHAGE_Bacill_phIS3501_NC_019502: portal protein; AT269_RS16200; phage(gi422934329)0.0Showinfo_outline
1712419..13129PHAGE_Bacill_phIS3501_NC_019502: ATP-dependent Clp protease; AT269_RS16205; phage(gi422934330)7.84e-158Showinfo_outline
1813167..14333PHAGE_Bacill_phIS3501_NC_019502: phage major capsid protein; AT269_RS16210; phage(gi422934331)0.0Showinfo_outline
1914360..14638PHAGE_Bacill_phIS3501_NC_019502: phage DNA packaging protein; AT269_RS16215; phage(gi422934332)1.34e-52Showinfo_outline
2014635..14958PHAGE_Bacill_phIS3501_NC_019502: phage head-tail adaptor; AT269_RS16220; phage(gi422934333)2.75e-63Showinfo_outline
2114951..15385PHAGE_Bacill_phIS3501_NC_019502: gp10 family phage protein; AT269_RS16225; phage(gi422934334)2.03e-96Showinfo_outline
2215382..15741PHAGE_Bacill_phIS3501_NC_019502: phage protein; AT269_RS16230; phage(gi422934335)3.03e-81Showinfo_outline
2315742..16347PHAGE_Bacill_phIS3501_NC_019502: phage major tail protein; AT269_RS16235; phage(gi422934336)2.51e-126Showinfo_outline
2416396..16713PHAGE_Bacill_phIS3501_NC_019502: phage protein; AT269_RS16240; phage(gi422934337)5.20e-59Showinfo_outline
2516743..16919PHAGE_Bacill_BtCS33_NC_018085: hypothetical protein; AT269_RS29905; phage(gi392972721)3.60e-31Showinfo_outline
2616935..20783PHAGE_Bacill_WBeta_NC_007734: putative phage tail tape measure protein; AT269_RS16245; phage(gi85701392)0.0Showinfo_outline
2720798..22294PHAGE_Bacill_WBeta_NC_007734: putative phage tail protein; AT269_RS16250; phage(gi85701393)0.0Showinfo_outline
2822291..27126PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AT269_RS16255; phage(gi31415800)0.0Showinfo_outline
3027217..27453PHAGE_Bacill_phIS3501_NC_019502: phage protein; AT269_RS16260; phage(gi422934341)2.62e-18Showinfo_outline
3127453..27692PHAGE_Bacill_phBC6A51_NC_004820: holin; AT269_RS16265; phage(gi31415802)5.45e-39Showinfo_outline
3227689..28753PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; AT269_RS16270; phage(gi31415803)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 48608 bps
Phages: 1
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download