Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1006580224

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|NZ_CP011540.1| Klebsiella aerogenes strain G7 isolate G7 plasmid pGPN1, complete 174066, gc%: 53.07%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
140.7Kbintact1304241421-82206 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)57.44%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP011540.1| Klebsiella aerogenes strain G7 isolate G7 plasmid pGPN1, complete 174066, gc%: 53.07%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 48 CDS

#CDS PositionBLAST HitE-ValueSequence
242679..43689PHAGE_Rhodoc_ReqiDocB7_NC_023706: tyrosine recombinase/integrase; EAG7_RS26035; phage(gi593775993)2.67e-12Showinfo_outline
343694..44563PHAGE_Entero_186_NC_001317: Orf81; EAG7_RS26040; phage(gi9634093)2.83e-29Showinfo_outline
444560..45042hypothetical protein; EAG7_RS260450.0Showinfo_outline
5complement(45032..45487)Hg(II)-responsive transcriptional regulator; EAG7_RS260500.0Showinfo_outline
645559..45924mercuric ion transporter MerT; EAG7_RS260550.0Showinfo_outline
745940..46215mercury resistance system periplasmic binding protein MerP; EAG7_RS260600.0Showinfo_outline
846243..46668organomercurial transporter MerC; EAG7_RS260650.0Showinfo_outline
946707..48392mercury(II) reductase; EAG7_RS260700.0Showinfo_outline
1048410..48775mercury resistance co-regulator MerD; EAG7_RS260750.0Showinfo_outline
1148772..49008broad-spectrum mercury transporter MerE; EAG7_RS260800.0Showinfo_outline
12complement(48992..49111)hypothetical protein; EAG7_RS281050.0Showinfo_outline
1349074..49286DUF3330 domain-containing protein; EAG7_RS260850.0Showinfo_outline
15complement(49306..49482)hypothetical protein; EAG7_RS281100.0Showinfo_outline
1649466..49552glutathione S-transferase; EAG7_RS281150.0Showinfo_outline
17complement(49524..50288)PROPHAGE_Brucel_1330: transposase, putative; EAG7_RS26090; phage(gi23502708)3.18e-55Showinfo_outline
18complement(50646..51146)GNAT family N-acetyltransferase; EAG7_RS260950.0Showinfo_outline
1951165..51344hypothetical protein; EAG7_RS281200.0Showinfo_outline
20complement(51274..52113)sulfonamide-resistant dihydropteroate synthase Sul1; EAG7_RS261000.0Showinfo_outline
21complement(52107..52454)PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; EAG7_RS26105; phage(gi311992758)9.11e-09Showinfo_outline
22complement(52618..53409)ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1; EAG7_RS261100.0Showinfo_outline
23complement(53502..53975)PHAGE_Bacill_Blue_NC_031056: hypothetical protein; EAG7_RS26115; phage(gi100007)2.28e-24Showinfo_outline
2454132..55145PHAGE_Mycoba_Butters_NC_021061: integrase; EAG7_RS26120; phage(gi479336499)2.05e-12Showinfo_outline
2555084..55698DUF3330 domain-containing protein; EAG7_RS288800.0Showinfo_outline
2755824..56384PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; EAG7_RS26130; phage(gi100061)7.62e-69Showinfo_outline
2856387..59353PROPHAGE_Xantho_33913: Tn5041 transposase; EAG7_RS26135; phage(gi21231545)8.67e-46Showinfo_outline
3059432..60436PROPHAGE_Shewan_MR-1: IS110 family transposase; EAG7_RS26140; phage(gi24375433)1.20e-57Showinfo_outline
31complement(60713..62677)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EAG7_RS26145; phage(gi100060)5.99e-55Showinfo_outline
3262840..63397PHAGE_Salisa_1_NC_017983: hypothetical protein; EAG7_RS26150; phage(gi388570712)1.47e-29Showinfo_outline
3363580..64440PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EAG7_RS26155; phage(gi100066)3.74e-56Showinfo_outline
34complement(64588..65052)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EAG7_RS26160; phage(gi100060)9.65e-52Showinfo_outline
35complement(65055..65612)PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; EAG7_RS26165; phage(gi100061)6.01e-65Showinfo_outline
36complement(65650..65973)hypothetical protein; EAG7_RS291200.0Showinfo_outline
37complement(65918..66931)PHAGE_Mycoba_Butters_NC_021061: integrase; EAG7_RS26170; phage(gi479336499)2.30e-12Showinfo_outline
3867111..67665PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; EAG7_RS26175; phage(gi985761240)4.14e-16Showinfo_outline
3967834..68181PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; EAG7_RS26180; phage(gi311992758)9.11e-09Showinfo_outline
4068175..69014sulfonamide-resistant dihydropteroate synthase Sul1; EAG7_RS261850.0Showinfo_outline
41complement(68944..69123)hypothetical protein; EAG7_RS281400.0Showinfo_outline
4269142..69642GNAT family N-acetyltransferase; EAG7_RS261900.0Showinfo_outline
43complement(69818..70600)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; EAG7_RS26195; phage(gi557307613)5.30e-44Showinfo_outline
44complement(70590..72113)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; EAG7_RS26200; phage(gi557307612)1.28e-23Showinfo_outline
45complement(72215..73075)transposition protein TniB; EAG7_RS262050.0Showinfo_outline
46complement(73078..74793)PROPHAGE_Brucel_1330: transposase, putative; EAG7_RS26210; phage(gi23501616)9.80e-34Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 174066 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download