Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1007451074

GenInfo (GI) Number: 0000000000

Download Results: 1007451074.PHASTER.zip

gi|00000000|ref|NZ_CP014747.1| Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed. 82007, gc%: 51.96%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
182Kbintact150851-82007 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(53)51.96%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP014747.1| Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed. 82007, gc%: 51.96%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 85 CDS

#CDS PositionBLAST HitE-ValueSequence
11..79head-tail adaptor protein; AL497_RS000050.0Showinfo_outline
260..449PHAGE_Klebsi_phiKO2_NC_005857: Gp10; AL497_RS00010; phage(gi46402096)5.08e-88Showinfo_outline
3446..847PHAGE_Klebsi_phiKO2_NC_005857: Gp11; AL497_RS00015; phage(gi46402097)7.69e-93Showinfo_outline
4882..1349PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; AL497_RS00020; phage(gi46402098)2.00e-106Showinfo_outline
51413..1781PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; AL497_RS00025; phage(gi46402099)1.06e-76Showinfo_outline
61802..2020PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; AL497_RS00030; phage(gi46402100)4.56e-47Showinfo_outline
72020..5362PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; AL497_RS00035; phage(gi46402101)0.0Showinfo_outline
85362..5700PHAGE_Klebsi_phiKO2_NC_005857: Gp16; AL497_RS00040; phage(gi46402102)5.41e-76Showinfo_outline
95697..6452PHAGE_Klebsi_phiKO2_NC_005857: Gp17; AL497_RS00045; phage(gi46402103)4.97e-173Showinfo_outline
106454..7164PHAGE_Klebsi_phiKO2_NC_005857: Gp18; AL497_RS00050; phage(gi46402104)1.00e-169Showinfo_outline
117169..7543hypothetical protein; AL497_RS000550.0Showinfo_outline
127597..8188phage tail protein; AL497_RS000600.0Showinfo_outline
138255..17574phage tail protein; AL497_RS000650.0Showinfo_outline
1418018..18683PHAGE_Entero_JenP1_NC_029028: hypothetical protein; AL497_RS00070; phage(gi971767088)2.60e-33Showinfo_outline
1518692..19828PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AL497_RS00075; phage(gi971742192)6.45e-46Showinfo_outline
16complement(19901..20878)PHAGE_Klebsi_phiKO2_NC_005857: Gp24; AL497_RS00080; phage(gi46402110)0.0Showinfo_outline
17complement(20881..22044)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; AL497_RS00085; phage(gi46402111)0.0Showinfo_outline
1822753..24675PHAGE_Klebsi_phiKO2_NC_005857: protelomerase; AL497_RS00090; phage(gi46402112)0.0Showinfo_outline
19complement(24730..25509)PHAGE_Klebsi_phiKO2_NC_005857: Gp27; AL497_RS00095; phage(gi46402113)2.16e-166Showinfo_outline
20complement(25506..25736)PHAGE_Klebsi_phiKO2_NC_005857: Gp28; AL497_RS00100; phage(gi46402114)3.66e-45Showinfo_outline
21complement(25733..25897)PHAGE_Klebsi_phiKO2_NC_005857: Gp29; AL497_RS00105; phage(gi46402115)3.97e-29Showinfo_outline
22complement(25990..26139)PHAGE_Entero_phiP27_NC_003356: hypothetical protein; AL497_RS00110; phage(gi18249880)2.03e-05Showinfo_outline
23complement(26294..26494)hypothetical protein; AL497_RS001150.0Showinfo_outline
24complement(26504..26854)PHAGE_Klebsi_phiKO2_NC_005857: Gp32; AL497_RS00120; phage(gi46402118)7.62e-58Showinfo_outline
25complement(26851..27147)hypothetical protein; AL497_RS001250.0Showinfo_outline
26complement(27140..31144)PHAGE_Klebsi_phiKO2_NC_005857: Gp35; AL497_RS00130; phage(gi46402121)0.0Showinfo_outline
27complement(31328..31951)PHAGE_Klebsi_phiKO2_NC_005857: Gp36; AL497_RS00135; phage(gi46402122)1.04e-137Showinfo_outline
2832032..32244PHAGE_Klebsi_phiKO2_NC_005857: Gp37; AL497_RS00140; phage(gi46402123)1.72e-41Showinfo_outline
2932234..32971PHAGE_Klebsi_phiKO2_NC_005857: lambda Q-like transcription antiterminator; AL497_RS00145; phage(gi46402124)8.11e-174Showinfo_outline
3032952..33197PHAGE_Yersin_PY54_NC_005069: hypothetical protein; AL497_RS00150; phage(gi33770552)1.89e-22Showinfo_outline
3133383..33991PHAGE_Klebsi_phiKO2_NC_005857: Gp39; AL497_RS00155; phage(gi46402125)2.96e-132Showinfo_outline
3234119..34451PHAGE_Klebsi_phiKO2_NC_005857: Gp41; AL497_RS00160; phage(gi46402127)1.05e-62Showinfo_outline
3334452..35132PHAGE_Klebsi_phiKO2_NC_005857: Gp42; AL497_RS00165; phage(gi46402128)1.55e-161Showinfo_outline
3435132..35425PHAGE_Klebsi_phiKO2_NC_005857: Gp43; AL497_RS00170; phage(gi46402129)9.15e-59Showinfo_outline
3535422..35799PHAGE_Salmon_SETP13_NC_022752: EaA protein; AL497_RS00175; phage(gi557307718)7.30e-31Showinfo_outline
3636145..36327PHAGE_Klebsi_phiKO2_NC_005857: Gp44; AL497_RS00180; phage(gi46402130)1.08e-27Showinfo_outline
3736324..36575PHAGE_Salmon_IME207_NC_031924: hypothetical protein; AL497_RS00185; phage(gi100050)1.94e-09Showinfo_outline
3836568..36894PHAGE_Klebsi_phiKO2_NC_005857: Gp45; AL497_RS00190; phage(gi46402131)1.51e-61Showinfo_outline
3936915..37142PHAGE_Klebsi_phiKO2_NC_005857: Gp46; AL497_RS00195; phage(gi46402132)3.12e-33Showinfo_outline
4037246..37449PHAGE_Klebsi_phiKO2_NC_005857: Gp47; AL497_RS00200; phage(gi46402133)3.20e-29Showinfo_outline
41complement(37496..37783)PHAGE_Klebsi_phiKO2_NC_005857: Gp48; AL497_RS00205; phage(gi46402134)1.46e-60Showinfo_outline
42complement(37783..38091)PHAGE_Klebsi_phiKO2_NC_005857: Gp49; AL497_RS00210; phage(gi46402135)2.70e-63Showinfo_outline
4338261..38482PHAGE_Klebsi_phiKO2_NC_005857: Gp50; AL497_RS00215; phage(gi46402136)1.92e-35Showinfo_outline
4438492..38719PHAGE_Klebsi_phiKO2_NC_005857: Gp51; AL497_RS00220; phage(gi46402137)8.04e-41Showinfo_outline
4538990..40051PHAGE_Klebsi_phiKO2_NC_005857: putative DNA adenine methylase; AL497_RS00225; phage(gi46402138)0.0Showinfo_outline
4640110..40421PHAGE_Klebsi_phiKO2_NC_005857: Gp53; AL497_RS00230; phage(gi46402139)9.96e-61Showinfo_outline
4740418..40909PHAGE_Klebsi_phiKO2_NC_005857: Gp54; AL497_RS00235; phage(gi46402140)1.17e-106Showinfo_outline
4840926..41396PHAGE_Klebsi_phiKO2_NC_005857: Gp55; AL497_RS00240; phage(gi46402141)1.17e-84Showinfo_outline
4941650..41940PHAGE_Klebsi_phiKO2_NC_005857: Gp58; AL497_RS00245; phage(gi46402144)5.43e-65Showinfo_outline
5042290..43015PHAGE_Klebsi_phiKO2_NC_005857: Gp59; AL497_RS00250; phage(gi46402145)1.12e-130Showinfo_outline
5143015..43377PHAGE_Klebsi_phiKO2_NC_005857: Gp60; AL497_RS00255; phage(gi46402146)2.83e-79Showinfo_outline
5243374..43688PHAGE_Klebsi_phiKO2_NC_005857: Gp61; AL497_RS00260; phage(gi46402147)6.14e-11Showinfo_outline
5343685..44116PHAGE_Klebsi_phiKO2_NC_005857: Gp62; AL497_RS00265; phage(gi46402148)4.22e-47Showinfo_outline
5444828..45010hypothetical protein; AL497_RS002700.0Showinfo_outline
5545037..45237PHAGE_Klebsi_phiKO2_NC_005857: Gp64; AL497_RS00275; phage(gi46402150)3.98e-39Showinfo_outline
5645369..45803PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; AL497_RS00280; phage(gi46402087)4.39e-95Showinfo_outline
5745838..47547PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; AL497_RS00285; phage(gi46402088)0.0Showinfo_outline
5847541..47720PHAGE_Klebsi_phiKO2_NC_005857: Gp3; AL497_RS00290; phage(gi46402089)1.69e-29Showinfo_outline
5947720..48985PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; AL497_RS00295; phage(gi46402090)0.0Showinfo_outline
6049023..49943PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; AL497_RS00300; phage(gi46402091)0.0Showinfo_outline
6150019..51305PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; AL497_RS00305; phage(gi46402092)0.0Showinfo_outline
6251372..51830PHAGE_Klebsi_phiKO2_NC_005857: Gp7; AL497_RS00310; phage(gi46402093)2.31e-98Showinfo_outline
6351811..52128PHAGE_Klebsi_phiKO2_NC_005857: Gp8; AL497_RS00315; phage(gi46402094)1.50e-62Showinfo_outline
6452125..52463PHAGE_Klebsi_phiKO2_NC_005857: Gp9; AL497_RS00320; phage(gi46402095)2.23e-76Showinfo_outline
6552444..52833PHAGE_Klebsi_phiKO2_NC_005857: Gp10; AL497_RS00325; phage(gi46402096)5.08e-88Showinfo_outline
6652830..53231PHAGE_Klebsi_phiKO2_NC_005857: Gp11; AL497_RS00330; phage(gi46402097)7.69e-93Showinfo_outline
6753266..53733PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; AL497_RS00335; phage(gi46402098)2.00e-106Showinfo_outline
6853797..54165PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; AL497_RS00340; phage(gi46402099)1.06e-76Showinfo_outline
6954186..54404PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; AL497_RS00345; phage(gi46402100)4.56e-47Showinfo_outline
7054404..57751PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; AL497_RS00350; phage(gi46402101)0.0Showinfo_outline
7157751..58089PHAGE_Klebsi_phiKO2_NC_005857: Gp16; AL497_RS00355; phage(gi46402102)5.41e-76Showinfo_outline
7258086..58841PHAGE_Klebsi_phiKO2_NC_005857: Gp17; AL497_RS00360; phage(gi46402103)4.97e-173Showinfo_outline
7358843..59553PHAGE_Klebsi_phiKO2_NC_005857: Gp18; AL497_RS00365; phage(gi46402104)1.00e-169Showinfo_outline
7459586..59933hypothetical protein; AL497_RS003700.0Showinfo_outline
7559987..60580PHAGE_Klebsi_phiKO2_NC_005857: Gp20; AL497_RS00375; phage(gi46402106)3.24e-101Showinfo_outline
7660647..69967PHAGE_Klebsi_phiKO2_NC_005857: Gp21; AL497_RS00380; phage(gi46402107)0.0Showinfo_outline
7770411..71076PHAGE_Entero_JenP1_NC_029028: hypothetical protein; AL497_RS00385; phage(gi971767088)2.60e-33Showinfo_outline
7871085..72221PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AL497_RS00390; phage(gi971742192)6.45e-46Showinfo_outline
79complement(72294..73271)PHAGE_Klebsi_phiKO2_NC_005857: Gp24; AL497_RS00395; phage(gi46402110)0.0Showinfo_outline
80complement(73274..74437)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; AL497_RS00400; phage(gi46402111)0.0Showinfo_outline
8175472..76635PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; AL497_RS00405; phage(gi46402111)0.0Showinfo_outline
8276638..77615PHAGE_Klebsi_phiKO2_NC_005857: Gp24; AL497_RS00410; phage(gi46402110)0.0Showinfo_outline
83complement(77688..78824)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; AL497_RS00415; phage(gi971742192)6.45e-46Showinfo_outline
84complement(78833..79441)PHAGE_Entero_JenP1_NC_029028: hypothetical protein; AL497_RS00420; phage(gi971767088)1.36e-33Showinfo_outline
85complement(79942..82007)phage tail protein; AL497_RS004250.0Showinfo_outline
Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 82007 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download