Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1011385986

GenInfo (GI) Number: 0000000000

Download Results: 1011385986.PHASTER.zip

gi|00000000|ref|NZ_CP012036.1| Nostoc piscinale CENA21 chromosome. 7094556, gc%: 40.54%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 0 regions are intact, 4 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
18.5Kbincomplete107736691-745223 info_outlinePHAGE_Bacill_G_NC_023719(5)40.31%Show info_outline
27.5Kbincomplete4010895256-902796 info_outlinePHAGE_Agroba_Atu_ph07_NC_042013(1)40.80%Show info_outline
310.6Kbincomplete2010937922-948523 info_outlinePHAGE_Plankt_PaV_LD_NC_016564(4)45.35%Show info_outline
430.6Kbincomplete40136366627-6397233 info_outlinePHAGE_Pseudo_PaMx11_NC_028770(1)41.88%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP012036.1| Nostoc piscinale CENA21 chromosome. 7094556, gc%: 40.54%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1736691..737677PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; ACX27_RS03250; phage(gi326781942)1.61e-06Showinfo_outline
2complement(737883..738026)hypothetical protein; ACX27_RS326800.0Showinfo_outline
3738437..739834PHAGE_Bacill_G_NC_023719: gp277; ACX27_RS03255; phage(gi593777733)1.64e-82Showinfo_outline
4739839..740438PHAGE_Bacill_G_NC_023719: gp281; ACX27_RS03260; phage(gi593777737)9.52e-06Showinfo_outline
5740399..741145PHAGE_Strept_YDN12_NC_028974: hydrolase; ACX27_RS03265; phage(gi971762176)1.64e-15Showinfo_outline
6741252..743009PHAGE_Agroba_Atu_ph07_NC_042013: RI membrane protein; ACX27_RS03270; phage(gi100135)1.12e-80Showinfo_outline
7complement(743195..745223)PHAGE_Bacill_G_NC_023719: gp245; ACX27_RS03275; phage(gi593777701)1.37e-05Showinfo_outline

Region 2, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(895256..896536)PHAGE_Pseudo_pf16_NC_041881: baseplate wedge tail fiber connector; ACX27_RS03965; phage(gi100202)4.08e-05Showinfo_outline
2complement(896533..897790)VWA domain-containing protein; ACX27_RS039700.0Showinfo_outline
3898114..898776PHAGE_Agroba_Atu_ph07_NC_042013: ATP-dependent Clp protease proteolytic subunit; ACX27_RS03975; phage(gi100676)2.42e-39Showinfo_outline
4898879..899472PHAGE_Agroba_Atu_ph07_NC_042013: ATP-dependent Clp protease proteolytic subunit; ACX27_RS03980; phage(gi100676)2.81e-62Showinfo_outline
5899670..900353PHAGE_Cellul_phi17:2_NC_021798: chaperonin DnaJ; ACX27_RS03985; phage(gi526177822)2.15e-06Showinfo_outline
6complement(900486..900890)type II toxin-antitoxin system VapC family toxin; ACX27_RS039900.0Showinfo_outline
7complement(900875..901105)prevent-host-death protein; ACX27_RS039950.0Showinfo_outline
8complement(901384..901812)GFA family protein; ACX27_RS040000.0Showinfo_outline
9902007..902285DUF1778 domain-containing protein; ACX27_RS040050.0Showinfo_outline
10902290..902796PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; ACX27_RS04010; phage(gi423262020)5.64e-05Showinfo_outline

Region 3, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(937922..938374)PHAGE_Plankt_PaV_LD_NC_016564: hypothetical protein; ACX27_RS04265; phage(gi371496202)2.99e-10Showinfo_outline
2complement(938374..938706)PHAGE_Plankt_PaV_LD_NC_016564: hypothetical protein; ACX27_RS04270; phage(gi371496200)2.55e-09Showinfo_outline
3complement(938703..939158)hypothetical protein; ACX27_RS042750.0Showinfo_outline
4complement(939158..940057)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; ACX27_RS04280; phage(gi327198568)1.33e-33Showinfo_outline
5complement(940185..940940)PHAGE_Plankt_PaV_LD_NC_016564: hypothetical protein; ACX27_RS04285; phage(gi371496197)6.51e-08Showinfo_outline
6complement(941043..942215)PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; ACX27_RS04290; phage(gi327198566)3.33e-33Showinfo_outline
7942304..942699PHAGE_Brevib_Jimmer2_NC_041976: thymidylate synthetase; ACX27_RS04295; phage(gi100061)1.92e-05Showinfo_outline
8942699..942861type II toxin-antitoxin system HicB family antitoxin; ACX27_RS315100.0Showinfo_outline
9complement(943261..943485)hypothetical protein; ACX27_RS043000.0Showinfo_outline
10complement(943493..948523)PHAGE_Ralsto_RS138_NC_029107: tail length tape measure protein; ACX27_RS04305; phage(gi985760952)2.38e-41Showinfo_outline

Region 4, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
16366627..6366639attL0.0Showinfo_outline
2complement(6380357..6386627)PHAGE_Entero_933W_NC_000924: serine/threonine kinase; ACX27_RS27365; phage(gi9632488)7.36e-08Showinfo_outline
3complement(6386865..6387212)PHAGE_Strept_phiSASD1_NC_014229: gp4; ACX27_RS27370; phage(gi298103512)3.42e-06Showinfo_outline
46387290..6388216PROPHAGE_Escher_Sakai: putative ATP-dependent protease; ACX27_RS27375; phage(gi15833954)2.86e-77Showinfo_outline
56388279..6388587helix-turn-helix transcriptional regulator; ACX27_RS273800.0Showinfo_outline
66388568..6389203PHAGE_Propio_G4_NC_041895: thymidylate synthetase; ACX27_RS27385; phage(gi100061)3.17e-06Showinfo_outline
76389196..6390257PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; ACX27_RS27390; phage(gi937456185)7.96e-16Showinfo_outline
86390244..6390633hypothetical protein; ACX27_RS273950.0Showinfo_outline
9complement(6390613..6390795)hypothetical protein; ACX27_RS274000.0Showinfo_outline
10complement(6390792..6391532)PHAGE_Haloar_SH1_NC_007217: ORF 11; ACX27_RS27405; phage(gi71647270)4.71e-06Showinfo_outline
11complement(6391533..6391988)PHAGE_Phormi_MIS_PhV1B_NC_028998: hypothetical protein; ACX27_RS27410; phage(gi100013)6.05e-11Showinfo_outline
12complement(6391985..6392683)hypothetical protein; ACX27_RS274150.0Showinfo_outline
13complement(6392680..6393597)hypothetical protein; ACX27_RS274200.0Showinfo_outline
14complement(6393600..6394157)PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: hypothetical protein; ACX27_RS27425; phage(gi428782758)1.15e-12Showinfo_outline
156397233..6397245attR0.0Showinfo_outline
Nostoc piscinale CENA21 chromosome
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 7094556 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download