Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1026688134

GenInfo (GI) Number: 0000000000

Download Results: 1026688134.PHASTER.zip

gi|00000000|ref|LXOM01000119.1| Salmonella enterica strain CU013109 PROKKA_contig000121, whole 366737, gc%: 51.71%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
143.8Kbintact10057322854-366737 info_outlinePHAGE_Salmon_ST160_NC_014900(23)47.22%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|LXOM01000119.1| Salmonella enterica strain CU013109 PROKKA_contig000121, whole 366737, gc%: 51.71%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 59 CDS

#CDS PositionBLAST HitE-ValueSequence
1322854..322874attL0.0Showinfo_outline
2complement(322912..324075)PHAGE_Salmon_ST160_NC_014900: Int; A7K97_17035; phage(gi318065905)0.0Showinfo_outline
3complement(324305..324649)PHAGE_Entero_c_1_NC_019706: hypothetical protein; A7K97_17040; phage(gi428781761)3.76e-78Showinfo_outline
4complement(324727..325038)PHAGE_Entero_933W_NC_000924: hypothetical protein; A7K97_17045; phage(gi9632469)1.84e-71Showinfo_outline
5complement(325120..325401)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; A7K97_17050; phage(gi89152468)1.21e-62Showinfo_outline
6complement(325394..326476)PHAGE_Entero_UAB_Phi20_NC_031019: minor tail protein; A7K97_17055; phage(gi100055)2.57e-91Showinfo_outline
7complement(326473..326766)PHAGE_Klebsi_phiKO2_NC_005857: Gp43; A7K97_17060; phage(gi46402129)4.18e-46Showinfo_outline
8complement(327151..327732)PHAGE_Salmon_ST160_NC_014900: hypothetical protein; A7K97_17065; phage(gi318065911)2.04e-65Showinfo_outline
9complement(327910..328203)PHAGE_Salmon_g341c_NC_013059: Putative ABC transporter ATP-binding protein; A7K97_17070; phage(gi255252711)4.47e-66Showinfo_outline
10complement(328219..328767)PHAGE_Salmon_g341c_NC_013059: endonuclease; A7K97_17075; phage(gi255252712)6.49e-135Showinfo_outline
11complement(328776..329282)PHAGE_Salmon_g341c_NC_013059: ssDNA binding protein; A7K97_17080; phage(gi255252713)1.82e-121Showinfo_outline
12complement(329283..329990)PHAGE_Salmon_ST160_NC_014900: recombination protein; A7K97_17085; phage(gi318065915)1.79e-172Showinfo_outline
13complement(329999..330187)PHAGE_Salmon_ST160_NC_014900: recombination protein; A7K97_17090; phage(gi318065916)5.20e-40Showinfo_outline
14complement(330754..331053)PHAGE_Salmon_BTP1_NC_042346: holin; A7K97_17095; phage(gi100034)1.26e-66Showinfo_outline
15complement(331093..331293)PHAGE_Salmon_ST160_NC_014900: Ral; A7K97_17100; phage(gi318065921)2.55e-36Showinfo_outline
16complement(331372..331704)PHAGE_Salmon_ST160_NC_014900: Gp24; A7K97_17105; phage(gi318065922)1.32e-65Showinfo_outline
17332068..332277PHAGE_Salmon_vB_SosS_Oslo_NC_018279: hypothetical protein; A7K97_17110; phage(gi399528808)6.41e-39Showinfo_outline
18complement(332313..333236)PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; A7K97_17115; phage(gi100038)0.0Showinfo_outline
19complement(333325..334014)PHAGE_Salmon_ST160_NC_014900: C2; A7K97_17120; phage(gi318065925)9.15e-168Showinfo_outline
20334125..334340PHAGE_Salmon_ST160_NC_014900: Cro; A7K97_17125; phage(gi318065926)2.12e-44Showinfo_outline
21334451..334732PHAGE_Salmon_ST160_NC_014900: C1; A7K97_17130; phage(gi318065927)2.00e-62Showinfo_outline
22334906..335725PHAGE_Salmon_UPF_BP1_NC_047875: hypothetical protein; A7K97_17135; phage(gi100010)5.70e-106Showinfo_outline
23335722..337098PHAGE_Salmon_103203_sal5_NC_031946: exonuclease; A7K97_17140; phage(gi100048)0.0Showinfo_outline
24337172..337612PHAGE_Entero_mEp234_NC_019715: NinB protein; A7K97_17145; phage(gi428782300)2.73e-102Showinfo_outline
25337609..338481PHAGE_Escher_Lys12581Vzw_NC_049917: tail assembly protein; A7K97_17150; phage(gi100053)0.0Showinfo_outline
26338936..339232PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: capsid decoration protein; A7K97_17155; phage(gi100066)4.04e-08Showinfo_outline
27339229..339624PHAGE_Salmon_118970_sal4_NC_030919: holin; A7K97_17160; phage(gi100034)2.49e-87Showinfo_outline
28339894..340382PHAGE_Salmon_BTP1_NC_042346: minor tail protein; A7K97_17165; phage(gi100055)9.06e-102Showinfo_outline
29340762..341088PHAGE_Entero_P22_NC_002371: inhibitor of gene 13' protein holin; A7K97_17170; phage(gi9635530)4.21e-73Showinfo_outline
30341072..341509PHAGE_Entero_ES18_NC_006949: gp76; A7K97_17175; phage(gi62362289)6.65e-101Showinfo_outline
31341506..341976PHAGE_Entero_ST104_NC_005841: gp15; A7K97_17180; phage(gi46358690)4.79e-80Showinfo_outline
32342189..342719PHAGE_Salmon_UPF_BP1_NC_047875: hypothetical protein; A7K97_17185; phage(gi100031)1.19e-123Showinfo_outline
33342978..343220PHAGE_Salmon_UPF_BP1_NC_047875: u-spanin; A7K97_17190; phage(gi100032)5.05e-52Showinfo_outline
34343224..343613PHAGE_Salmon_ST160_NC_014900: hypotthetical protein; A7K97_17195; phage(gi318065947)3.58e-91Showinfo_outline
35343613..344017PHAGE_Salmon_g341c_NC_013059: hypothetical protein; A7K97_17200; phage(gi255252750)5.32e-92Showinfo_outline
36344021..344509PHAGE_Salmon_ST160_NC_014900: Gp3; A7K97_17205; phage(gi318065949)9.17e-118Showinfo_outline
37344487..345986PHAGE_Salmon_ST160_NC_014900: Gp2; A7K97_17210; phage(gi318065950)0.0Showinfo_outline
38345986..348163PHAGE_Salmon_vB_SemP_Emek_NC_018275: portal protein; A7K97_17215; phage(gi399498794)0.0Showinfo_outline
39348177..349088PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; A7K97_17220; phage(gi100004)0.0Showinfo_outline
40349088..350380PHAGE_Salmon_ST160_NC_014900: Gp5; A7K97_17225; phage(gi318065953)0.0Showinfo_outline
41350421..350981PHAGE_Salmon_g341c_NC_013059: hypothetical protein; A7K97_17230; phage(gi255252688)2.63e-133Showinfo_outline
42350965..351465PHAGE_Salmon_vB_SemP_Emek_NC_018275: head completion protein; A7K97_17235; phage(gi399498798)2.73e-121Showinfo_outline
43351425..352843PHAGE_Salmon_ST160_NC_014900: Gp10; A7K97_17240; phage(gi318065956)0.0Showinfo_outline
44352847..353548PHAGE_Salmon_epsilon34_NC_011976: Tail accessory protein; A7K97_17245; phage(gi221328627)1.97e-148Showinfo_outline
45353548..354003PHAGE_Salmon_ST160_NC_014900: Gp14; A7K97_17250; phage(gi318065958)1.66e-108Showinfo_outline
46354006..354695PHAGE_Salmon_ST160_NC_014900: Gp7; A7K97_17255; phage(gi318065959)2.59e-155Showinfo_outline
47354706..356010PHAGE_Salmon_ST160_NC_014900: Gp20; A7K97_17260; phage(gi318065960)0.0Showinfo_outline
48356010..357923PHAGE_Salmon_ST160_NC_014900: Gp16; A7K97_17265; phage(gi318065961)0.0Showinfo_outline
49complement(357941..358270)hypothetical protein; A7K97_172700.0Showinfo_outline
50358301..358666PHAGE_Salmon_ST160_NC_014900: hypothetical protein; A7K97_17275; phage(gi318065962)2.15e-87Showinfo_outline
51complement(358680..358859)PHAGE_Salmon_SE1_NC_011802: hypothetical protein; A7K97_17280; phage(gi219681256)5.09e-36Showinfo_outline
52complement(358959..359210)PHAGE_Salmon_ST160_NC_014900: Mnt; A7K97_17285; phage(gi318065963)1.83e-54Showinfo_outline
53359346..361349PHAGE_Salmon_ST160_NC_014900: Gp9; A7K97_17290; phage(gi318065964)0.0Showinfo_outline
54complement(361408..362865)PHAGE_Salmon_ST160_NC_014900: GtrC; A7K97_17295; phage(gi318065902)0.0Showinfo_outline
55complement(362855..363787)PHAGE_Salmon_ST160_NC_014900: GtrB; A7K97_17300; phage(gi318065903)0.0Showinfo_outline
56complement(363784..364146)PHAGE_Entero_UAB_Phi20_NC_031019: recombination protein; A7K97_17305; phage(gi100049)5.85e-83Showinfo_outline
57364440..364460attR0.0Showinfo_outline
58complement(364441..364655)PHAGE_Shigel_Stx_NC_029120: integrase; A7K97_17310; phage(gi985761248)7.76e-11Showinfo_outline
59complement(365630..366737)PHAGE_Salmon_epsilon34_NC_011976: GtrC; putative membrane protein; A7K97_17315; phage(gi221328637)2.09e-54Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 366737 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download