Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1028492071

GenInfo (GI) Number: 0000000000

Download Results: 1028492071.PHASTER.zip

gi|00000000|ref|CP015504.1| Klebsiella pneumoniae strain SKGH01 plasmid unnamed 4, complete 56230, gc%: 52.97%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
154.5Kbintact120541709-56228 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(48)53.33%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP015504.1| Klebsiella pneumoniae strain SKGH01 plasmid unnamed 4, complete 56230, gc%: 52.97%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
11709..2872PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; A7B01_29675; phage(gi46402111)0.0Showinfo_outline
22875..3840PHAGE_Klebsi_phiKO2_NC_005857: Gp24; A7B01_29680; phage(gi46402110)0.0Showinfo_outline
3complement(3919..5418)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; A7B01_29685; phage(gi971742192)1.45e-18Showinfo_outline
4complement(5596..18492)PHAGE_Klebsi_phiKO2_NC_005857: Gp21; A7B01_29690; phage(gi46402107)0.0Showinfo_outline
5complement(18555..19166)PHAGE_Klebsi_phiKO2_NC_005857: Gp20; A7B01_29695; phage(gi46402106)1.15e-96Showinfo_outline
6complement(19564..20274)PHAGE_Klebsi_phiKO2_NC_005857: Gp18; A7B01_29700; phage(gi46402104)1.96e-165Showinfo_outline
7complement(20276..21031)PHAGE_Klebsi_phiKO2_NC_005857: Gp17; A7B01_29705; phage(gi46402103)3.07e-157Showinfo_outline
8complement(21028..21366)PHAGE_Klebsi_phiKO2_NC_005857: Gp16; A7B01_29710; phage(gi46402102)1.68e-72Showinfo_outline
9complement(21366..24746)PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; A7B01_29715; phage(gi46402101)0.0Showinfo_outline
10complement(24979..25344)PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; A7B01_29720; phage(gi46402099)1.12e-71Showinfo_outline
11complement(25401..25862)PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; A7B01_29725; phage(gi46402098)2.21e-88Showinfo_outline
12complement(25894..26295)PHAGE_Klebsi_phiKO2_NC_005857: Gp11; A7B01_29730; phage(gi46402097)1.15e-87Showinfo_outline
13complement(26292..26681)PHAGE_Klebsi_phiKO2_NC_005857: Gp10; A7B01_29735; phage(gi46402096)5.13e-78Showinfo_outline
14complement(26662..27000)PHAGE_Klebsi_phiKO2_NC_005857: Gp9; A7B01_29740; phage(gi46402095)8.25e-72Showinfo_outline
15complement(26997..27314)PHAGE_Klebsi_phiKO2_NC_005857: Gp8; A7B01_29745; phage(gi46402094)1.49e-62Showinfo_outline
16complement(27295..27690)PHAGE_Klebsi_phiKO2_NC_005857: Gp7; A7B01_29750; phage(gi46402093)1.44e-29Showinfo_outline
17complement(27749..29035)PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; A7B01_29755; phage(gi46402092)0.0Showinfo_outline
18complement(29113..30033)PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; A7B01_29760; phage(gi46402091)0.0Showinfo_outline
19complement(30070..31329)PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; A7B01_29765; phage(gi46402090)0.0Showinfo_outline
20complement(31329..31508)PHAGE_Klebsi_phiKO2_NC_005857: Gp3; A7B01_29770; phage(gi46402089)3.14e-24Showinfo_outline
21complement(31502..33211)PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; A7B01_29775; phage(gi46402088)0.0Showinfo_outline
22complement(33246..33680)PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; A7B01_29780; phage(gi46402087)7.67e-100Showinfo_outline
23complement(34182..34610)PHAGE_Klebsi_phiKO2_NC_005857: Gp62; A7B01_29785; phage(gi46402148)4.09e-55Showinfo_outline
24complement(34610..34939)PHAGE_Klebsi_phiKO2_NC_005857: Gp61; A7B01_29790; phage(gi46402147)1.56e-07Showinfo_outline
25complement(35237..36313)PHAGE_Klebsi_phiKO2_NC_005857: Gp59; A7B01_29795; phage(gi46402145)1.83e-45Showinfo_outline
26complement(36558..37766)PROPHAGE_Escher_Sakai: putative transposase; A7B01_29800; phage(gi38704244)0.0Showinfo_outline
27complement(37987..38160)PHAGE_Klebsi_phiKO2_NC_005857: Gp29; A7B01_29805; phage(gi46402115)9.97e-17Showinfo_outline
28complement(38740..39216)PHAGE_Klebsi_phiKO2_NC_005857: Gp55; A7B01_29810; phage(gi46402141)2.81e-86Showinfo_outline
29complement(39233..39724)PHAGE_Klebsi_phiKO2_NC_005857: Gp54; A7B01_29815; phage(gi46402140)7.73e-108Showinfo_outline
30complement(39721..40032)PHAGE_Klebsi_phiKO2_NC_005857: Gp53; A7B01_29820; phage(gi46402139)6.25e-59Showinfo_outline
31complement(40091..41152)PHAGE_Klebsi_phiKO2_NC_005857: putative DNA adenine methylase; A7B01_29825; phage(gi46402138)0.0Showinfo_outline
32complement(41470..41697)PHAGE_Klebsi_phiKO2_NC_005857: Gp51; A7B01_29830; phage(gi46402137)3.56e-41Showinfo_outline
33complement(41709..41930)PHAGE_Klebsi_phiKO2_NC_005857: Gp50; A7B01_29835; phage(gi46402136)4.18e-38Showinfo_outline
3442101..42409PHAGE_Klebsi_phiKO2_NC_005857: Gp49; A7B01_29840; phage(gi46402135)2.48e-63Showinfo_outline
3542409..42696PHAGE_Klebsi_phiKO2_NC_005857: Gp48; A7B01_29845; phage(gi46402134)1.50e-61Showinfo_outline
36complement(43048..43275)PHAGE_Klebsi_phiKO2_NC_005857: Gp46; A7B01_29850; phage(gi46402132)1.91e-34Showinfo_outline
37complement(43296..43622)PHAGE_Klebsi_phiKO2_NC_005857: Gp45; A7B01_29855; phage(gi46402131)1.40e-62Showinfo_outline
38complement(43615..43860)PHAGE_Escher_HK639_NC_016158: hypothetical protein; A7B01_29860; phage(gi356870658)2.62e-36Showinfo_outline
39complement(43857..44333)PHAGE_Klebsi_phiKO2_NC_005857: Gp41; A7B01_29865; phage(gi46402127)1.12e-22Showinfo_outline
40complement(44461..45069)PHAGE_Klebsi_phiKO2_NC_005857: Gp39; A7B01_29870; phage(gi46402125)4.97e-131Showinfo_outline
41complement(45279..45500)PHAGE_Yersin_PY54_NC_005069: hypothetical protein; A7B01_29875; phage(gi33770552)1.12e-20Showinfo_outline
42complement(45481..46218)PHAGE_Klebsi_phiKO2_NC_005857: lambda Q-like transcription antiterminator; A7B01_29880; phage(gi46402124)7.15e-155Showinfo_outline
43complement(46208..46417)PHAGE_Klebsi_phiKO2_NC_005857: Gp37; A7B01_29885; phage(gi46402123)5.70e-41Showinfo_outline
4446498..47106PHAGE_Klebsi_phiKO2_NC_005857: Gp36; A7B01_29890; phage(gi46402122)6.72e-138Showinfo_outline
4547357..51331PHAGE_Klebsi_phiKO2_NC_005857: Gp35; A7B01_29895; phage(gi46402121)0.0Showinfo_outline
4651343..51591PHAGE_Klebsi_phiKO2_NC_005857: Gp34; A7B01_29900; phage(gi46402120)3.72e-43Showinfo_outline
4751588..51917PHAGE_Entero_N15_NC_001901: gp35; A7B01_29905; phage(gi9630505)1.23e-55Showinfo_outline
4851920..52252PHAGE_Entero_N15_NC_001901: gp34; A7B01_29910; phage(gi9630504)9.92e-63Showinfo_outline
4952249..52584PHAGE_Klebsi_phiKO2_NC_005857: Gp32; A7B01_29915; phage(gi46402118)1.97e-75Showinfo_outline
5052654..52881PHAGE_Klebsi_phiKO2_NC_005857: Gp31; A7B01_29920; phage(gi46402117)3.22e-49Showinfo_outline
5153270..53434PHAGE_Klebsi_phiKO2_NC_005857: Gp29; A7B01_29925; phage(gi46402115)1.39e-27Showinfo_outline
5253431..53661PHAGE_Klebsi_phiKO2_NC_005857: Gp28; A7B01_29930; phage(gi46402114)1.91e-44Showinfo_outline
5353658..54440PHAGE_Klebsi_phiKO2_NC_005857: Gp27; A7B01_29935; phage(gi46402113)0.0Showinfo_outline
54complement(54495..56228)PHAGE_Klebsi_phiKO2_NC_005857: protelomerase; A7B01_29940; phage(gi46402112)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 56230 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download