Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1034308689

GenInfo (GI) Number: 0000000000

Download Results: 1034308689.PHASTER.zip

gi|00000000|ref|KU665641.1| Klebsiella pneumoniae strain AO-15200 plasmid pG06-VIM-1, complete 53618, gc%: 53.02%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.1Kbquestionable9026436-36556 info_outlinePHAGE_Salmon_SJ46_NC_031129(6)52.44%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|KU665641.1| Klebsiella pneumoniae strain AO-15200 plasmid pG06-VIM-1, complete 53618, gc%: 53.02%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 30 CDS

#CDS PositionBLAST HitE-ValueSequence
1436..1230PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)4.49e-55Showinfo_outline
2complement(1723..2307)Macrolide 2'-Phosphotransferase MphR; -0.0Showinfo_outline
3complement(2307..3545)Hydrophobic Protein Mrx; -0.0Showinfo_outline
4complement(3542..4447)Macrolide 2'-Phosphotransferase MphA; -0.0Showinfo_outline
5complement(4569..5291)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)6.78e-53Showinfo_outline
66347..6358attL0.0Showinfo_outline
77077..7088attL0.0Showinfo_outline
8complement(7169..8245)Transposase TnpA; -0.0Showinfo_outline
9complement(8464..9051)PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; -; phage(gi557307549)3.13e-59Showinfo_outline
10complement(9099..9383)PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; -; phage(gi557307550)5.75e-22Showinfo_outline
11complement(9627..10043)Virulence Associated Protein VagD; -0.0Showinfo_outline
12complement(10040..10270)Virulence-Associated Protein VagC; -0.0Showinfo_outline
1310844..11194Hypothetical Protein; pG06-VIM-1_10.0Showinfo_outline
1411245..11988Hypothetical Protein; pG06-VIM-1_20.0Showinfo_outline
1511985..12761PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; -; phage(gi764159894)5.08e-08Showinfo_outline
1613844..14710PHAGE_Burkho_KS14_NC_015273: gp37; -; phage(gi327198306)1.71e-17Showinfo_outline
1715571..16776PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100009)0.0Showinfo_outline
1816776..17750PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100010)1.82e-116Showinfo_outline
19complement(17832..19103)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; -; phage(gi431811050)0.0Showinfo_outline
20complement(19103..19534)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; -; phage(gi431811072)3.62e-34Showinfo_outline
2119943..21427PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; -; phage(gi100001)4.60e-37Showinfo_outline
2221773..22276PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; -; phage(gi557307573)4.57e-109Showinfo_outline
2322279..22290attR0.0Showinfo_outline
24complement(22405..22902)Hypothetical Protein; pG06-VIM-1_30.0Showinfo_outline
2523442..23753PHAGE_Entero_HK022_NC_002166: IS903 transposase; pG06-VIM-1_4; phage(gi9634149)5.10e-48Showinfo_outline
26complement(23750..24589)PROPHAGE_Xantho_33913: Tn5041 transposase; -; phage(gi21231545)3.09e-41Showinfo_outline
27complement(24599..26059)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100060)8.10e-72Showinfo_outline
28complement(26113..26829)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)1.54e-53Showinfo_outline
2926842..28092PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100067)3.77e-53Showinfo_outline
3036556..36567attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 53618 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download