Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1040745335

GenInfo (GI) Number: 0000000000

Download Results: 1040745335.PHASTER.zip

gi|00000000|ref|CP016161.1| Klebsiella pneumoniae plasmid unnamed2, complete sequence. 109349, gc%: 49.35%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1109.2Kbintact1501178-109215 info_outlinePHAGE_Salmon_SSU5_NC_018843(96)49.36%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016161.1| Klebsiella pneumoniae plasmid unnamed2, complete sequence. 109349, gc%: 49.35%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 121 CDS

#CDS PositionBLAST HitE-ValueSequence
18..994PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26470; phage(gi410491467)0.0Showinfo_outline
21055..1999PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; BAU11_26475; phage(gi410491468)0.0Showinfo_outline
31999..2265PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26480; phage(gi410491469)7.32e-49Showinfo_outline
42268..3347PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; BAU11_26485; phage(gi410491470)0.0Showinfo_outline
53441..3644PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26490; phage(gi410491471)8.69e-24Showinfo_outline
63644..4474PHAGE_Salmon_SSU5_NC_018843: putative SPFH domain / band 7 protein; BAU11_26495; phage(gi410491472)0.0Showinfo_outline
74792..5454PHAGE_Yersin_phiR1_37_NC_016163: hypothetical protein; BAU11_26500; phage(gi358356637)5.05e-30Showinfo_outline
85523..5699PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26505; phage(gi410491474)6.98e-17Showinfo_outline
95886..6065PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26510; phage(gi410491476)3.48e-13Showinfo_outline
106062..6397PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26515; phage(gi410491477)3.21e-46Showinfo_outline
116397..6609PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; BAU11_26520; phage(gi410491478)1.19e-36Showinfo_outline
12complement(7061..8158)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; BAU11_26525; phage(gi410491479)7.76e-99Showinfo_outline
138305..8316attL0.0Showinfo_outline
148479..9123PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26530; phage(gi410491480)2.78e-127Showinfo_outline
159199..9693PHAGE_Salmon_SSU5_NC_018843: putative GNAT family acetyltransferase; BAU11_26535; phage(gi410491481)1.38e-86Showinfo_outline
169882..10967PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; BAU11_26540; phage(gi410491483)0.0Showinfo_outline
1710922..11200PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26545; phage(gi410491484)2.60e-24Showinfo_outline
1811197..13113PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; BAU11_26550; phage(gi410491485)0.0Showinfo_outline
1913103..13849PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26555; phage(gi410491486)3.32e-107Showinfo_outline
2013859..14428PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; BAU11_26560; phage(gi410491487)5.44e-127Showinfo_outline
2114504..16807PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; BAU11_26565; phage(gi410491488)0.0Showinfo_outline
2216938..18080PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; BAU11_26570; phage(gi410491489)0.0Showinfo_outline
2318158..19033PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; BAU11_26575; phage(gi410491490)0.0Showinfo_outline
2419227..20330PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; BAU11_26580; phage(gi410491491)0.0Showinfo_outline
2520332..20745PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26585; phage(gi410491492)1.26e-72Showinfo_outline
2620742..21218PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; BAU11_26590; phage(gi410491493)2.83e-91Showinfo_outline
2721218..21862PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26595; phage(gi410491494)1.65e-124Showinfo_outline
2821926..22345PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26600; phage(gi410491495)9.91e-73Showinfo_outline
2922355..22912PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; BAU11_26605; phage(gi410491496)3.26e-114Showinfo_outline
3023038..23871PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26610; phage(gi410491497)8.99e-102Showinfo_outline
3124056..24649PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; BAU11_26615; phage(gi410491498)6.83e-128Showinfo_outline
3224847..25080PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26620; phage(gi410491499)4.70e-43Showinfo_outline
3325653..26240PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; BAU11_26625; phage(gi410491500)5.77e-118Showinfo_outline
34complement(26838..27026)hypothetical protein; BAU11_266300.0Showinfo_outline
3527238..27663PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BAU11_26635; phage(gi100118)8.47e-78Showinfo_outline
3627663..27818PHAGE_Escher_Pollock_NC_027381: hypothetical protein; BAU11_26640; phage(gi849254797)4.63e-09Showinfo_outline
3727946..28524PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26645; phage(gi410491504)7.81e-74Showinfo_outline
3828653..30338PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; BAU11_26650; phage(gi410491505)0.0Showinfo_outline
3930400..31128PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26655; phage(gi410491506)6.75e-106Showinfo_outline
4031244..31885PHAGE_Salmon_SSU5_NC_018843: putative guanosine polyphosphate pyrophospho hydrolase/synthetase; BAU11_26660; phage(gi410491509)5.67e-131Showinfo_outline
4131882..32418PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26665; phage(gi410491510)4.05e-97Showinfo_outline
4232415..32783PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; BAU11_26670; phage(gi431810533)1.49e-13Showinfo_outline
4332780..33037hypothetical protein; BAU11_266750.0Showinfo_outline
4433168..33431PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26680; phage(gi410491513)1.17e-38Showinfo_outline
4534239..34556PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26685; phage(gi410491515)2.16e-54Showinfo_outline
4636481..36699PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26690; phage(gi410491521)3.13e-37Showinfo_outline
4736712..36924PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26695; phage(gi410491522)1.17e-32Showinfo_outline
4837061..37372PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26700; phage(gi410491523)5.11e-44Showinfo_outline
4937492..37899PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26705; phage(gi410491524)8.75e-30Showinfo_outline
5038026..38307PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26710; phage(gi410491525)4.21e-55Showinfo_outline
5138513..38995PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26715; phage(gi410491527)1.81e-91Showinfo_outline
52complement(39588..39791)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; BAU11_26720; phage(gi410491529)2.75e-39Showinfo_outline
53complement(39842..40492)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26725; phage(gi410491530)4.00e-145Showinfo_outline
54complement(41126..41656)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; BAU11_26730; phage(gi410491531)1.72e-92Showinfo_outline
5541812..42249PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; BAU11_26735; phage(gi410491532)1.03e-15Showinfo_outline
56complement(42300..42575)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26740; phage(gi410491533)8.64e-40Showinfo_outline
57complement(42578..44137)PHAGE_Salmon_SSU5_NC_018843: putative helicase; BAU11_26745; phage(gi410491534)0.0Showinfo_outline
5844197..44901PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; BAU11_26750; phage(gi410491535)2.80e-145Showinfo_outline
5944901..45569PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; BAU11_26755; phage(gi410491536)7.33e-145Showinfo_outline
6045566..46207PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; BAU11_26760; phage(gi410491537)1.92e-150Showinfo_outline
6146197..46748hypothetical protein; BAU11_267650.0Showinfo_outline
6246745..47635PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; BAU11_26770; phage(gi410491539)0.0Showinfo_outline
6347645..47911PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26775; phage(gi410491540)8.05e-42Showinfo_outline
6448087..48728PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; BAU11_26780; phage(gi410491411)1.27e-109Showinfo_outline
6548731..49987PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; BAU11_26785; phage(gi410491412)0.0Showinfo_outline
6650020..51594PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26790; phage(gi410491413)0.0Showinfo_outline
6751617..52516PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26795; phage(gi410491414)0.0Showinfo_outline
6852543..53421PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; BAU11_26800; phage(gi410491415)0.0Showinfo_outline
6953500..53928PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; BAU11_26805; phage(gi410491416)1.23e-39Showinfo_outline
7053976..54410PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26810; phage(gi410491417)1.20e-84Showinfo_outline
7154410..55243PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26815; phage(gi410491418)1.53e-176Showinfo_outline
7255341..55685PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26820; phage(gi410491419)3.73e-73Showinfo_outline
7355676..56149PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26825; phage(gi410491420)2.78e-103Showinfo_outline
7456151..56543PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26830; phage(gi410491421)6.64e-63Showinfo_outline
7556611..57357PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; BAU11_26835; phage(gi410491422)1.18e-145Showinfo_outline
7657419..57736PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26840; phage(gi410491423)1.71e-64Showinfo_outline
7757853..58086PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26845; phage(gi410491424)4.30e-46Showinfo_outline
7858094..62629PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; BAU11_26850; phage(gi410491425)0.0Showinfo_outline
7962673..63008PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; BAU11_26855; phage(gi410491426)2.34e-67Showinfo_outline
8063095..63793PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; BAU11_26860; phage(gi410491427)5.38e-158Showinfo_outline
8163786..64583PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; BAU11_26865; phage(gi410491428)2.92e-175Showinfo_outline
8264571..65182PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; BAU11_26870; phage(gi410491429)2.10e-112Showinfo_outline
8365199..77336PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; BAU11_26875; phage(gi410491430)0.0Showinfo_outline
8477389..78834PHAGE_Klebsi_Sushi_NC_028774: tail fiber; BAU11_26880; phage(gi971742192)1.26e-50Showinfo_outline
8578925..79248PHAGE_Salmon_SSU5_NC_018843: putative holin; BAU11_26885; phage(gi410491436)3.68e-70Showinfo_outline
8679262..79954PHAGE_Salmon_SSU5_NC_018843: putative endolysin; BAU11_26890; phage(gi410491437)2.95e-156Showinfo_outline
8779957..80208PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26895; phage(gi410491438)5.14e-36Showinfo_outline
8880159..80344PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; BAU11_26900; phage(gi410491439)2.14e-25Showinfo_outline
89complement(80405..80962)hypothetical protein; BAU11_269050.0Showinfo_outline
9081282..81947PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; BAU11_26910; phage(gi410491443)3.60e-132Showinfo_outline
9181947..82309PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26915; phage(gi410491444)2.53e-62Showinfo_outline
9282353..84065hypothetical protein; BAU11_269200.0Showinfo_outline
9384243..84968PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26925; phage(gi410491448)1.26e-163Showinfo_outline
9485033..86362PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; BAU11_26930; phage(gi410491449)0.0Showinfo_outline
9586516..87634PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; BAU11_26935; phage(gi410491450)0.0Showinfo_outline
96complement(87677..88843)hypothetical protein; BAU11_269400.0Showinfo_outline
9789132..89920PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26945; phage(gi410491452)5.97e-95Showinfo_outline
9890000..90467PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26950; phage(gi410491453)3.23e-65Showinfo_outline
9990467..91789PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; BAU11_26955; phage(gi410491454)0.0Showinfo_outline
10091789..91965PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26960; phage(gi410491455)5.73e-23Showinfo_outline
10191949..92164PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26965; phage(gi410491456)2.46e-33Showinfo_outline
10292310..92609PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_26970; phage(gi410491458)7.35e-39Showinfo_outline
10393366..93440tRNA0.0Showinfo_outline
10493588..93674tRNA0.0Showinfo_outline
105complement(93843..94757)hypothetical protein; BAU11_269800.0Showinfo_outline
10694917..95693PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; BAU11_26985; phage(gi589287556)1.83e-121Showinfo_outline
10795703..96089PHAGE_Shigel_Sf6_NC_005344: hypothetical protein; BAU11_26990; phage(gi41057339)3.65e-63Showinfo_outline
10896086..96331PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; BAU11_26995; phage(gi371671381)1.18e-14Showinfo_outline
10996426..97043hypothetical protein; BAU11_270000.0Showinfo_outline
11097053..97463PHAGE_Escher_HK639_NC_016158: hypothetical protein; BAU11_27005; phage(gi356870618)2.28e-17Showinfo_outline
111complement(97527..97883)hypothetical protein; BAU11_270100.0Showinfo_outline
11298241..99341PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; BAU11_27015; phage(gi169257266)1.26e-23Showinfo_outline
113complement(99336..99716)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; BAU11_27020; phage(gi100041)5.82e-10Showinfo_outline
11499990..100202hypothetical protein; BAU11_270250.0Showinfo_outline
115100319..102598PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; BAU11_27030; phage(gi410491459)0.0Showinfo_outline
116102695..103927PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; BAU11_27035; phage(gi410491460)0.0Showinfo_outline
117103974..103985attR0.0Showinfo_outline
118104108..107626PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; BAU11_27040; phage(gi410491462)0.0Showinfo_outline
119107623..108066PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_27045; phage(gi410491463)5.50e-81Showinfo_outline
120complement(108219..108434)PHAGE_Lactoc_bIL312_NC_002671: Csp; BAU11_27050; phage(gi13095918)1.64e-22Showinfo_outline
121108784..109215PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BAU11_27055; phage(gi410491466)1.26e-91Showinfo_outline
Klebsiella pneumoniae plasmid unnamed2, complete sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 109349 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download