Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1047013155

GenInfo (GI) Number: 0000000000

Download Results: 1047013155.PHASTER.zip

gi|00000000|ref|CM004510.1| Klebsiella pneumoniae strain Kp33 plasmid pKP33, complete 73152, gc%: 51.61%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
128.9Kbquestionable8014988-29941 info_outlinePHAGE_Microc_MaMV_DC_NC_029002(2)50.93%Show info_outline
221.6Kbquestionable701730004-51662 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)51.55%Show info_outline
37.8Kbincomplete60747947-55786 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(3)54.25%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CM004510.1| Klebsiella pneumoniae strain Kp33 plasmid pKP33, complete 73152, gc%: 51.61%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 16 CDS

#CDS PositionBLAST HitE-ValueSequence
1988..1001attL0.0Showinfo_outline
2complement(1040..1744)PROPHAGE_Brucel_1330: transposase, putative; BA196_26375; phage(gi23502708)1.98e-53Showinfo_outline
31807..4299PROPHAGE_Xantho_33913: Tn5041 transposase; BA196_26380; phage(gi21231545)2.17e-34Showinfo_outline
44334..6136PROPHAGE_Xantho_306: Tn5044 transposase; BA196_26385; phage(gi21243163)6.92e-98Showinfo_outline
56212..6613phage shock protein operon transcriptional activator; BA196_263900.0Showinfo_outline
66707..7351PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; BA196_26395; phage(gi971764756)1.18e-17Showinfo_outline
7complement(7443..8174)PHAGE_Escher_ECML_117_NC_025441: putative 3-oxoacyl-(acyl-carrier-protein) reductase; BA196_26400; phage(gi725950210)7.76e-07Showinfo_outline
8complement(8224..8928)PROPHAGE_Brucel_1330: transposase, putative; BA196_26405; phage(gi23502708)1.98e-53Showinfo_outline
9complement(9474..10487)PHAGE_Mycoba_Butters_NC_021061: integrase; BA196_26410; phage(gi479336499)2.05e-12Showinfo_outline
1010634..11116PHAGE_Bacill_Blue_NC_031056: hypothetical protein; BA196_26415; phage(gi100007)1.15e-22Showinfo_outline
1111337..11603mobilization protein; BA196_264200.0Showinfo_outline
1211746..12510PROPHAGE_Brucel_1330: transposase, putative; BA196_26425; phage(gi23502708)3.18e-55Showinfo_outline
1312777..13985PHAGE_Burkho_KL3_NC_015266: gp45; BA196_26430; phage(gi327198090)1.15e-40Showinfo_outline
14complement(14019..15452)PHAGE_Burkho_KL3_NC_015266: gp47; BA196_26435; phage(gi327198092)4.72e-132Showinfo_outline
1515557..15823PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; BA196_26440; phage(gi557307573)5.16e-53Showinfo_outline
1629941..29954attR0.0Showinfo_outline

Region 2, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
130004..30708PROPHAGE_Brucel_1330: transposase, putative; BA196_26540; phage(gi23502708)1.98e-53Showinfo_outline
230747..30760attL0.0Showinfo_outline
330750..30761attL0.0Showinfo_outline
430807..31406PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; BA196_26545; phage(gi985761240)4.91e-16Showinfo_outline
531537..32367class D beta-lactamase; BA196_265500.0Showinfo_outline
632505..33053type B chloramphenicol O-acetyltransferase; BA196_265550.0Showinfo_outline
7complement(32999..33703)PROPHAGE_Brucel_1330: transposase, putative; BA196_26560; phage(gi23502708)1.98e-53Showinfo_outline
833756..33767attR0.0Showinfo_outline
933810..34670PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; BA196_26565; phage(gi9630129)3.38e-25Showinfo_outline
1034683..35225tunicamycin resistance protein; BA196_265700.0Showinfo_outline
1135317..35628transposase; BA196_265750.0Showinfo_outline
1235625..36401PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; BA196_26580; phage(gi41057343)1.14e-32Showinfo_outline
13complement(36419..37123)PROPHAGE_Brucel_1330: transposase, putative; BA196_26585; phage(gi23502708)1.98e-53Showinfo_outline
14complement(37188..39185)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BA196_26590; phage(gi100060)1.12e-70Showinfo_outline
1539505..39777tryptophan synthase subunit beta like protein; BA196_265950.0Showinfo_outline
16complement(39824..40699)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BA196_26600; phage(gi100066)1.60e-170Showinfo_outline
17complement(40955..42217)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BA196_26605; phage(gi100067)3.19e-53Showinfo_outline
18complement(42399..42617)transposase; BA196_266100.0Showinfo_outline
1942781..43338PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BA196_26615; phage(gi100036)2.13e-27Showinfo_outline
2043521..44381PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BA196_26620; phage(gi100066)5.20e-57Showinfo_outline
2151662..51675attR0.0Showinfo_outline

Region 3, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
147947..48123PHAGE_Salmon_epsilon15_NC_004775: integrase; BA196_26645; phage(gi30387406)2.12e-10Showinfo_outline
2complement(48305..49309)PROPHAGE_Shewan_MR-1: IS110 family transposase; BA196_26650; phage(gi24375433)1.05e-58Showinfo_outline
3complement(49388..50875)PROPHAGE_Xantho_33913: Tn5041 transposase; BA196_26655; phage(gi21231545)1.22e-47Showinfo_outline
4complement(50908..51612)PROPHAGE_Brucel_1330: transposase, putative; BA196_26660; phage(gi23502708)1.98e-53Showinfo_outline
551747..52175PROPHAGE_Xantho_33913: Tn5041 transposase; BA196_26665; phage(gi21231545)3.47e-12Showinfo_outline
6complement(52185..52550)FipA; BA196_266700.0Showinfo_outline
7complement(52550..55786)PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; BA196_26675; phage(gi564292555)7.93e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 73152 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download