Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1050654150
GenInfo (GI) Number: 0000000000
Download Results: 1050654150.PHASTER.zip
gi|00000000|ref|LYNH01000039.1| Klebsiella pneumoniae strain SKLX2467 plasmid pSKLX2467 73919, gc%: 49.85%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 21.8Kb | incomplete | 40 | 6 | 20-21858 info_outline | PHAGE_Salmon_SJ46_NC_031129(3) | 46.92% | Show info_outline |
Region DNA
>1 20-21858 AACAGCAAGCGTTACACTCAGCGCATTGAGCGACATAACCTGAATCTGCGACAACATCTGGCAAGGCTGG GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACAT AAAACACTATCAATAAGTTGGAGTCATTACCCTCAGAACCATTGTTAAAGCGGTACTGGGTAGATTTGAA GTCAATATCAGACCCCTCACTCTTATAACGCAGCATATTTAACAATTTGTCCATTTCAGTTCTCTTGCTT AGGTTTCATTAACATATTTTAAATAAGCCACTGTCTGAGTGATTGTGTCTGGTACGCAGAACAAACAGGA CCTTCATTCAGTTGCTCCACTCAAACTGTGATTAGCTACTTCCGCTTTTTTCACAAAGCGGACGATATCC CGTTAAAGCGCTTGCATATACTGTAAAACAAAATTCAATACCCGGTAAAAGAAAGCTTGGCTTCCAGCCA GTAATATGAGGTCCTGTTTGCTTGTTGTACTGTCCCCTCATCCGTAGACAAATTTCATCCTCGCAGAGAG GCCTATTAGAAAGTCTTCGGGCTTAATCCATAGAGGAAGTTGTGGCGTCAGATATGATTGCAGGGCACTT CAATGTAATCAAATATATCCTGCCGGGCCATGGCCCGGGCTTGATATATTCACTTCCTTACACGCACTTA TATGAGTAAACAAGAAACGATGCTGCCTTAGCATTATCCCAGCAATTGCTACTTTAGACATGCTTTAGCT CTAACATTGGAACAATACTACTCTTTTGTACCTTTGCCGATGTCGGCATGGTACTCACCTTCACAAATTC AATGACAGCCATATGGTAATTTTTTACTAATTTTTGGCGCGCCATTATGAAGTTAGTCGAGTGACCTGCC CCCAGGATTAGATACAACCGTCAGTTAGTAAGGTCGGTTTGTTTACCTTCACATTTTCCATTTCGCCACC GTGCTGCAAACTCTGATGGCGTCTGATAATTCAGTGCTGAATGTGGACGACACTCGTTATAATCCTGCCG CCAGTCATTAATGATTTTCCTTGCGTGAACGATATCGCTGAACCAGTGCTCATTCAGGCATTCATCGCGA AATCGTCCGTTAAAGCTCTCAATAAATCCGTTCTGCGTTGGCTTCCCGGCTGGATTAAGCGCAACTCAAC ACCATGCTCAAAGGCCCATTGATCCAGTGCACGGCAAGTGAACTCCGGCCCCTGGTCAGTTCTTATCGTC GCCGGATAGCCTCGAAACAGTGCAATGCTGTCCAGAATACGCGAGACCTGAACGCCTGAAATCCCAAAGG CAACAGTGACCGTCAGGCATTCCTTTGTGAAATCATCGACGCAGGTAAGACACTTGATCCTGCGACCGGT GGAAAGTGCGTCCATGACGAAATCCATCGACCAGGTCAGATTGGGCGCCGCCGGACGGAGCAGCGGCAGA CGTTCTGTTGCCAGCACTTTACGACGTCTTCTGCGTTTTACGCCCAGGCCACTGAGGTGATAAAGCCGGT ACACGCGCTTATGATTAACATGAAGCCCTTCACGGCGCAGCAACTGCCAAATACGACGGTAGCCAAAACG CCTGCGCTCCAGTGCCAGCTCAGTGATGCGCCCTGATAAATGCGCATCAGCAGCCGGACGGTGAGCCTCA TAGCGGCAGGTCGACAGGGATAAACCTGTAAGCCTGCAGGCACGACGTTGCGACATACCGGTCGCATCAC ACATCAGCATCACGGCTTCCCGCTTCTGGTCTGTCGTCAGTACTTTCGCCCAAGAGCCACCTGAAGCGCC TCTTTATCCAGCATGGCTTCGGCAAGCAGCTTCTTGAGTCTGGCGTTCTCTTCCTCAAGCGACTTCAGGC GCTTAACTTCAGGCACCTCCATACCGCCATACTTCTTACGCCAGGTGTAAAACGTGGCATCGGAAATGGC ATGCTTGCGGCAGAGTTCACGGGCGGGTACCCCAGCTTCGGCTTCGCGGAGAATACTGATGATCTGTTCG TCGGAAAAACGCTTCTTCATGGGGATGTCCTCATGTGGCTTATGAAGACATTACTAACATCGGGGTGTAC TAATCAACGGGGAGCAGGTCACGAGCTATATATTGGCAATGTGAGAGTCAAGAGGCTGGATTTACATCAT AAGTCTTTCAAGAAGCTACCCACATGTATATCCCCGTCACTGTGGATAAACAATCTATTGAGTCTTATTC ATCTGCATAACCTGTGATAAGTAATGTCTCTGAAATCCCCAGATCATACAGTGTGACGAAATGCATGATG TGGCTATGCTGATGACGGAATGATGTTATTCACCCTGGGTTGTGAAAATAGCCTGGATTGGTTACTTGCC GGACGAAGGTCTGAACAGCGCGTAGCGGCAGCAATTGACCTTTAAAAACTGGAGGAGATTAAACCGAATA CACTGCGAAATTTGACAAATTGTACTCAGTATACTCGGCTCTAATCCCGATCCATTACTATTCAATCGCC AGATATTTCAGTTCTGCTGCAAGATTATTCCGCTCTTCGTGATGCAATCATGTCAAAAATCAGTTCGTCA TTGACATCAATGCAACCATGGTCCCAGGCTGATAACCTGACCAACGATGCAGGTGGGACCGTGGTCCCAG GCTGGAAACCTAAACAATGATGCAGGTGGGACCGTGGTCCCAGGCAGCTAAGCTGACCGACGACGCAGGT GGGACCGTGGTCCCAGAAAGATAACCTGACCGACGATGCAGGTGGGACCGTGGTCCCAGGCAGCTAAGCT GACCGACGATGCAGGTGGGACCGTGGTCCCAGAAAGATAACCTGACCGACGATGCAGGTGGGACCGTGGT CCCAGAAAGATAACCTGACCGACGACGCAGGTGGGACCGTGGTCCCAGGCAGCTAAGCTGACCGACGACG CAGGTGGGACCGTGGTCCCAGAAAGATAACCTGACCGACGATGCAGGTGGGACCGTGGTCTCAGAGAGAA TATTTAGGCCAGTTATGTTTTCTGGCCTGTGAGAAAGGAAATGAAGTAAAGGGAGATAACCGTAGACTAA AGCGTGTCCGCATCAGACTCCTGGTTTCTCAAGCTCCTTAAGAATGGCTTCTATTTTCTCTATACACTCC ACAGGAATGCGGGACCTATCCAGATTAAGCACCATTTTATCGCCCTTATACAATGCTGTTGCCCCTGGAG CAAACTGATGACGTGAGCTCAGATTAACCCTTGGAGAGGGAGATTGTTTCAGTACGGATGTTAAAAGACT AATGACCTCTTCAGCTTCAAAGATTAGTCCCGCTTTCTTCTGATCGTGGAGAGTCTCAGCCTGCTGCTTC AGTAATTCTTCTTTATCTGCAAAAGCCTTCTGAAGGGCTTCACCTGACCGGGCAGACAGTTCTCCAGGAT GTGCAAACAGGGCAACAACGGATTTAGGCAGTTTGGCCGTATTAATACAGCGGGTAATGATCTTACGAGA GATGTTTTCCGCATCGGCAAGCGCAGAAATATTTCCTGCAAACTCATTCTGCAGCCGGCTTGTATAACGC AGGCCACGTTCATAAGCACTCGTCGGCCGATAATCGTTACCCAGTCGGGACAATGCAGCCATCTGCTCAT CGTCCAGTTCACCAACCAGAACGCGATAATCACTTTCCGTCAGGATTGCGGCTTTACGGCGACGGCTGCC GTCTGCAATTTCTATGACATCAGAAACCCGGCGGCCGAAAGCTGGAGTCTGCTGACCGGTCAGTAAAAAT GAAGGAATGAGATCATCCAGAGCATCTTCGGTAAGTAGTTCCTGATCGCGCTCATTGCCTGACCATACGC GTGAAGCGCTCTCAACAGAGTCTCCCCGGAGCACCTCAAGGGTAAATTTTACTTCCCGTCCACATACCGG AAGAGAGATAGCATTACCTCGGGCCATAGCACCCACGCGCGCAATTAATGAATCCACCATAGGTGCGGCT GGCGCCGGTGATGAAGTATCTTCAGTCGATTGAGTATGTGTGGTATGTCTTGGAATGACAGGAGCACGCT TCATTATCTAATCTCCCAGCGTGGTTTAATCAGACGATCAAAAATCTCATTGCAAACAGGTTCCCATATA GAGAGGGCATTACGCCAGGCGCCAGTTGAAGAACGTTGATCAATAGCCTGTTCAAAAACGGTTCTCATAC GGATCTGACCTTTACCGACTTCATCCGTTTCGCGCACAACATTTTTAAGGACCATGCTTCCCCAGGCATC CCGAATTTGTTCTTCCATCCACGGGGACTGCGAGCCGTTATTATTACTGTATTTAGTAAGCAGAATACGG ACATCTGGCTCAAAGCCTTTAAGATCCACGTTCTTAAGCAGGTCACGCAGCATATCGAAAAACTGCAGTG CGGAGGTGTAGTCGAAAAGCTCTGCCGGAGTAGGGACAATCAGTACATCAGCAGCGCATACAACATTTAT CGTACCGATACCAAGGTTGGGTGCACTGTCGATAACTATCACATCATAATCATGAGCGATAGTTTCAATG GCCAGACGGAGCATCAGGTGCGGGTCAGCAGGTAATTTGCCTTCGTCAAATTTCCCCATCAGCTCGGTTT CAATGCGGTGCAGTGCCAGACAGGACGGGATGATATCAAGGCCAGGCCAGCAGGTGGGCTTTATAGCGTA GCTGGCGTCATCCTTTTCCCCAAGATAAAAGGGCAGGAGAGTGTCCTCAGCATGAATATGAAGATCGGGC ACCCATCCGTGATACATAGAAGCAGTTCCCTGTGGGTCATTGCCTTCAACAAGCAGAACACGGAGTCCTT TCAGAGCAAGATCCTGAGCCAGGTGAACGGATACTGAGGTTTTGTAAACACCACCTTTGTGAGCAGCAAC ACCAATCACCGGCGGAAACGCATCTTCAGCACGGCGCAGTCGTGTACCAAATACATCCCGCATGTGATTG ATTTGCTCGATGGTATAACCAACGCGTTGCTCAACTCTCCCACGGGTTTCCATATCAGGGTGCGGCAGCC GGCCAGCTTTCTCGGCATCCCTGATAGCCTGAGATGACACGCCAACTAAATCAGCTGCTTCACCAATCCT CCAGCGCCGGGTTATTTTCCGGGCTTCCGGACTGTCATCATTAAACTGCGCAATGGCGATTGCTTTCGTC ATTTCATGACCAGCACTTATGCACTGGTTGAGTGTATCCATGAGTCCCATACTGAACATCCTTTAATCTT CACTTTGCATTATTTTATTAAATCTTGGAATTTATTGCAAAGCAACAATAAAAACGCAAAGTGCACGAAA AAGTGCAAAGTGAACCGCATTGGGTGATGCAAAGAACGCAGGGGATTACAAAAGAGTACATACCGCAGTC AATATTAATCACTGCCGCTCGCCGCAGTAAGCGATCTCACGGAGTGAGAAAGCGGCGAGGAAGCGGAAAA TCACAGAATTCACAGATTGCACGTACGTCGGGTTGCTAAAGATGGCTCTGGATAAGCCAGTTATAATGAA ATTGACTGCGGTATGTAATATATTGACTATGGTATGATGCTTACCGCATCTGTGTCGAGAAAGAGGAAAG ACGACTCAGCATACCGCAGTCAATGTTTCATTGTTGTACCTGTAGATCTCAATCTTCCAGAGCGTATTCA GGAAAATCAGGCCAGGGTTCTGGATATCTGGTATGGCGCTTCCGGCCTTGTATCTGGGTTATTCATGGTC TCGATCCAATAATTGATCCCAAGGAGATCATAGTGAGATCCAAAAGAGATCCCCGGATCGCTCCAGCATG CGCTGTAACTGGCTTTAACGTCTGTCTGGATCGACTGCGGAATGTAAAATGTTGACTGTTATATGCATAA TCTAATACTGTGATATGCAACGGTATTTACAGAGGTATGTATATCCGTTGACTGCGATACGTATTACTAC ATCCTTTTGTGGATAACCGTTGAGGATCAAGATGACGAGCGAAAATAACAGCTTACTTCTGAACCTTCAG GAAGTTGATAAGACAACCGGCGAAGTTGTTAAGCTGGATGTCAACAGCACCAGTACCGTGCAGCCAGTAG CGCTCATGAGACTCGGTCTCTTCGTCCCAACTCTGAAATCAACAGGGAAGAGCAAGGCGAACCGGAAAAA CGTTACAGACGCGACTGAGGAGCTTGTACAGCTGTCCATTGCCAAAAGCGAAGGGTACACTGACGTTAAG ATCACCGGTTCGCGTCTTGATATGGACACGGATTTTAAAGTCTGGCTGGGGATAATTCGCTCCATGTCGG AGTATGGGGTAAAAAGTGACACCCTGGAACTGTCGTTCGTCGAATTCGTTAAGATGTGCGGATTTGACTC CCGTCGTTCAAACAAAAAAATGCGCGATCGCATCAGTAATTCCCTGTTTAAACTCGCCTCGGTTACGTTG AAGTTCCAGAGCGAGACCAAAGGATGGACCACCCATCTGGTGCAGTCAGCCTATTATGACATCAACGAGG ATATCGTTGAGATCAAGGCTGAACCTAAGCTGTTTGAGCTTTACCACATGGACAGAAGGGTACTGCTGCG GCTGAAAGCCATTGACGCCCTGCAGCGCAAGGAATCAGCCCAGGCGCTTTATACCTACATCGAAAGTCTT CCCCAGAATCCTGCACCTATTTCCATGAAACGGATGCGTGAGCGGCTGAATCTCACCTCAAATGTCTATA CGCAGAACCACACGGTGCGTAAGGCGATGGAGCAGCTGCGGGATATTGGTTATCTGGATTACACCGAGTT TAAACGTGGCCGAGCCACCTATTTCAGCGTGCATTATCGCAACCCCAAACTCATCAGTGGCCCTGTGAAG GTTCCGCGCAATGAGGAAGAAGAGAAGGCGCCAGAGCAAAATTATGACGAAGTCATTAAGGCGCTGAAGG CTGCGGGCATCGATCCTCTTAAACTGGCTGAAGCCCTCTCAGCGATGAAGCCAGAAAATTGACTGCGATA TGCATATCATGACTGCCGTATGCCGCTAAGGACATTCCATTGACTGTGATATGCATCACGCATACCGCAG TCAATATTTATTCTCTATCATGTCTGCCCGGATCGAACAATATTGACTGTAATATGTGATTTCGGGTCTT GATACGCAGATATTGACTACGGCATGCGGGTTTAACGGGGGTATTCCCTGGTCTGTTCACTATTTCATGG GTGATAACATGCCACAGTCAATTTTTCAGTAAAGCTCTATACCCCTTACGAAGATCTCAATCGGATGCTG AGACGGTCATGTTACCTGATGGTATCCGTTCCCCTGTGTACTGCAGATTTAGCCCGGCAGGATGAGACTG CAGCTGTTTGTATAACCCGGCGCCAGCTTCACGCTGCTAAATGCGATCAGGAAACGGGAGCCGGATGGCA GAAAAATGTGGGCCACAGATGGTCAATGACTGTCGCAGTTAACGGGATGATTCGCTGAGCTTTCAGGAAA TAACGCACCGTGGGATGCACGGCCAGAATGCCTGCATTGTGCCCTGTCTTGTCTGCGGTATGTTGATGCC TGCAGGATTGCAGGTCACCGGGTAAGACCACGGCGGTTCAGTCATCAGCATGATGGACTGGTGTGCTGGA GCAGGGAGGGGGCTGAATGCGCTCTGCTCCTGTATTCCGTATTAGCGGAATACAGGACGTCATGCCAGGC GTGCCAATCTCAGCCGGCCGGGGGCAGGGAGCGAAGGATCTCCGCGGCATCGCGACCGTCACCGGTAAAG GGAACGGCCAGGGTGGCAGCCATGTCCAGCGCAAATACCCGGGTATAGACTTCCATCGAGCGCGGATCCT TATGCCCGGCCAGTGCCTGGATGACCTTCCTGGGCTGCCGGTGATAAAGCATGTGCATAATATAGCTGTG ACGGAAAGTATGCGGCGTCACGGGGATCGAAAAATGCACGCCGTCAGCTTCAGCCCGCTTCACCGCATGT TTCAGCCAGTTGCGCATTGTCTCATCCGTGACCGGCCATAACGGCTCACGCCGGCGGGGGCGGGTGGTGA CCATCCAGCTTTCCATCTGACGCACAAAACTGGCATCCGTCAGCGGCACCAGTCGCACTTCATCTTTTGG TGGCCGCCCGCGCCGCGCGCGCACTTTCTCCGACAGCACCCTAACAAACGGGCGCAGACCATCCAGGTCG AACGATTCCGGGGTGAGCGTCCGGGCTTCACCGATACGGATCCCGGTATTCCACATGGTGGCGAACAACA TGTGGTGACGCTGGTCAGGCATATACCAGAGGAGGGCGCTCACTTCCGGCGCCAGGAGGTAAGCCGGCGT GGCACCTGTTGAGGTGGCCATCCGCCGGAGTGCCACCGCGGTCGCAAAATCAACGCCCGGGGCGATCGGC AGCAGGGAGACGCGTTCTGGTGAATTCTGCAGGGGAATGATGCTGTTCATGAGTTATTTTTCACGTAGCG CACGCACTGTTTATGGATACAGGTATTTTGCACCTGACGGGCCGATCCTGCCATGACAATAAATCGCAGC GCGCGGATCCTTTTGTTGTCTTATCCCGCATTATTGCGGGTAAAACCAAATACGTAAAGGATCCTTTTTC TGCTCAGATCCTCCATGAAGCCAGTAATGACGCGGGTTGATGGCTGTTTTACGGTTTTTGGGAGAATTGG AGTAATGCCAGGATGTACATGTTAGGCAGGAAACAGAAGAGAAGAGAGCGCTACGCGATTTCCGGCCTGG TACACCCCTGTAACCTTGCGGGATTTCGCGTAACGCTTTCATAAGTTTACAACAGAAGAGAAAAGATAAT TGCTGAAAAATGAAGTCCGTAAGTTAAATAAAAAATCATGATCCGTCCGGCACTATGTACTTAGCTGTCG TTTAGGTCTTAGGTGTTTTTGCTAAATTACGATGGTATCCCTTGTAAGAGTAATCTGGCTTGTCCTGCAC ATCTTCAGGTGACAATTCAGTGCAATTTCAGGGATTAATCCTTTTGTCGTCTGCAGAATCTCTCTATAAA CGGGCTGTTTGTTGGTTCGCCAGAAGGAAAAAATTTAGCGTCGCGCAGATTCAGGCTGTGTTGAACTTTT CTGTTCTGTATCAACAGTTCCTGTCTTAAGCTGATACAATATACCCTCAGTAGAAAATATTGGATAAGGA AACTATGTACCTTCCTGGACAATTTTCTTGAACCTTTCATGCCGTCTCGTCTTGTTCAGATTCAGAACTG CCATACGTTTCTTCAGCCACTGGTTTTCATAAGAAACCATGAAGATCAAGCATTAATGTCTTTACATTTA TTTGAACAGATGCGCTTTAATTGTGCCACAAAAAATAAGTCATTGTAAGTTATGGCGATTTTTAATATAC AAATCATTATGCATTCTGAATACATGGAAGTGTATAATGAGCGCTTCAGGTCACAGATGATTAGATGTAA CAGTTCACTATTCATCATGATTTATTGGAAACTTGTTAAGTTTTATATGATTATGAGATATTGGGATTAT TGAGTTCCAGGACAATTCTGATAAGATAGCGATAACCAACACTACCCTGCAATAACCACTCAAGATGAAA ATTATGACAAACCATAAAGAAGAGAACAGGTTATTATCATTATATTCTATGGGGATCCTTGATACAAAAT ATGAAGAACGATTTGACAGATTGACGAGGATTGCCACCAAACTCTTTGATGTACCAATAGCACTTGTTTC ATTAATTGATAGAGACAGGCAATGGTTTAAGTCATGTTATGGGCTGAAGATAAAAGAGACAGATAGAAGT GATTCATTTTGTACAATAGCAGTAGATCTTAGTGAACCATTAATAGTGCCCGATGCAAGCCTTGATCCAA GATTCAAAGAAAATAAATTAGTTAAAAATGATCCTTATATCCGGTTTTATGCAGGGCATCCCGTAAGACT GCCAGATGGTGAGATAGCTGGAACAATATGTATTATTGATACAGAACCAAGAGTATTAACCAGAGATGAC TTCTTATTGCTTAAAGATTTAGCAGAAATCGTAGAGGATGAGTTTAGAATAATAAACGAAGCAACTACTG ATCCTTTGACAGGTATATGTAACCGGCGTTCTTTCGCCCTAATGACGGATGAATCGTTAAGAAAAGCCAA AAAAAAGAAAAAAACATTCTGTGTTCTGATCATAGATCTCGATAATTTTAAACCAATCAATGATAACTTC GGTCATTCAGAAGGTAATGAAGTACTTTGCAATTTTGCAGATATGCTGGAAGATCTTAGTAGTTCAAAAA GCGTTGTTGCAAGATTAGGAGGTGATGAATTTGGTGTTCTATTACCCGAGTCAACCTATAAAGAAGCAGA AGAATTCCTTCATAAATTGAGGGCCGGGATTACCAGCTACAATCTTAATTCTCAAAAAAAATACAACATA GATTTTTCTGCAGGGATTATTGAATATGATGAGGAAATTCATACTGAATGCTCTGCTATCATGCAGGATG CAGACGAAAGAATGTATGAAATTAAAAAGGGAAAACGATAGTATATGAAAAAATAGGACATACAGCCCTA TTTTTTTTGGCCCCTCAAAAAATCAATCAGTTGATCACCTGACAAAGGCTTCGAATAATAATAACCTTGA AATTCATCGCAATTCATATTTTTTAGCAATTCAAACTGTTCATTATTTTCCACACCTTCTGCGACTATAC CTAAACTGAAAGCTTTTCCAAGAGACACTATGCTTCTTACAATAGATAAGTCCCGTGCAACGTGGGCAAT ACCACTAATGAATGTTCTGTCTAACTTAATCGCATCAAATGGAAATTCTCTTAGATAGTTGAGAGAGGAA TATCCAGTCCCAAAATGGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGAAGGATCAGATCACGTATC TTCCCGACAACGCAGACCGTTCCGTGGCAAAGCAAAAGTTCAAAATCACCAACTGGCCCACCTACAATAA AGCCCTCATCAACCGTGGCTCCATAACTTTCTGGCTGGATGATGAAGCTATTCAGGCCTGGTATGAGTCA GCAACACCTTCTTCACGAGGCAGACCTCAGCGCTATTCTGACCTTGCCATCACGACTGTGCTGGTCATTA AACGCGTATTCAGGCTGACCCTGCGCGCTGCGCAGGGCTTTATTGATTCCATTTTTTCTCTGATGAACGT TCCGCTACGCTGCCCGGATTACAGCTGTGTCAGCAGGCAGGCAAAGTCGGTTAATGTCAGTTTCAAAACG CCCACCCGGGGTGAAATCGCACACCTGGTAATTGATTCCACCGGGCTGAAGGTCTTCGGTGAAGGCGAGT GGAAAGTCAAAAAGCATGGCCAGGAACGCCGCCGTATCTGGCGTAAGCTGCATCTCGCCGTTGACAGTAA AACACATGAAATCATCTGCGCTGACCTGTCGCTGAACAATGTGACGGACTCAGAAGCCTTCCCGGGTCTT ATCCGGCAGACTCACAGAAAAATCAGGGCAGCATCGGCAGACGGCGCTTACGACACCCGGCTCTGTCACG ATGAACTGCGGCGTAAGAAAATCAGCGCGCTTATCCCACCCCGAAAAGGTGCGGGTTACTGGCCCGGTGA ATATGCAGACCGTAACCGTGCAGTGGCTAATCAGCAAATGACCGGGAGTAATGCGCGGTGGAAATGGACA ACAGATTACAACCGTCGCTCGATAGCGGAAACGGCGATGTACCGGGTAAAACAGCTGTTCGGGGGTTCAC TGACGCTGCGTGACTACGATGGTCAGGTTGCGGAGGCTATGGCCCTGGTACGAGCGCTGAACAAAATGAC GAAAGCAGGTATGCCTGAAAGCGTGCGTATTGCCTGAAAACACAACCCGCTACGGGGGAGACTTACCCGA AATCTGATTTATTCAACAAAGCCTATAAAAGAAATAAAGAAAAAGATGAAACTGGCTAGCACATATGAGT TGTATCAATTCGCGTATATGTTAAAATCACTCACGGACTCGACCTAATCTCCTTTTTTAATTGTTAACAC AGGTATTTTTATGTTATTGTATGTTGTTTTGTCTATTTCGCTGGTTTTATTATATGGGATGATAATAAAA TATAAAGTGAAGTCAAGGAAATCACAGGGTACTGTAAAAAAGCCTATGGCAATCAGAAATAATAGAAATC TAAAGTAGATTCAAAGAGAATAGCTTTCGGGTATAAATGTAGTTATTCCGTCTTCAGTAAGTTAATGATA AATGCTTTACTCTACCTGATGTTATACAGGACGAGTTTTTCTCACTTTTATCTAATGTGTATATTGTTTT TTCTTTATATCTAAAACTGAAGTCATTGATTCCAGACAGGGCGCGATGACGGTAGTTATCCCGCCTTGTC ATCGCACAAGAATACTGAAACTCTACGGCCAATCCGACTGACCAGAATAATCAGAATTATTATTGCACAA CAAATTTCATTTTCCTCACGTCAGTGATTCCGGCGGGCGTTAAGTAAAAACGGAGATGTTCTGCCAAATA ATTTATGATTTAATGTAGCTCTATATTATTTTTCCCGGAAATTAGTTGCAACAGATATATTCTGTCTTTC TCAATGAGAGCTGGAAATGTATCGCCAGCAGCTGCCAGCAGAGACCATACTTCCAGGATAGCATAGGCCT TTGTATATTCAAGTGCGAAACCTAACCCTTCCAGAGAACCTGCTCTGCGAATATGTTCACATATTGCATT TTCACATACCCGTGTTAAGGCTTCATAACTGAGCGAAAAATCATATTTTTTATCCATCTTAAGCTATCTT CACCCAAATGCAGATATCCGGTTACACGTTGCAATGCGTAACATTATCAATAATAACCCGATTATAACAT GAATTTTCGTTTTGTAATGCCGATGTCACACAACATTTTACTCTGTTTTTTTCAAAAAAGAGTGTCTTTA TTTTGGTGTACACCTTAGTGTGCGATCGCCCAGCAAGAAATGAATATTCGTTCTATACTAGTGGGTAAAA AACCGCATTACATGCATCGCTTAAAAGTTGCACCATGCATCTGGAGCCTTCACGAGGCTATTAATAACGC ATGAATTATCTCTGTAAATCATAACCAGTATCTATCCGAACCATGTCACATTATTTGATTCATACCCGGG ATGAGTAAGGCAAGAATAGGTATACTGGAATAGTATGTTCAGTGCCAGCTAATCGGTCAGTGAAGTTGGC GAAAATATAGCTTTATATCTTTTCAATTTGAGGGGAGATCTGCATGGTTAGTCGTAAGCTGGAACGTTTG ATTAGCCCTGGAAAGTGGATACATAATCTATCAGTCCTCTCTTTATCGATTCTTTCAGCTGGTATATTTT TTTGTATTATCTGAGAGCGTATCTTACCTGATTTTTCGGGATAAAATTAAAGACTATACTTCCGATGTGC TTGTTCGCTCTGAATCGCTCCTGGTTCAGACTGAATCTGTCAAGACTGCTGCAAAGTCACATTTGAATAT AGGAGACAGTCCATGTACTAATGAAAATATCCTACATCTTCGGGTTGTAGTATGGCCCTATCCGTTGATT AAAGATGTTGGCTACATCATAAAAGGAGAATTAGCCTGTAGTGCTCTGTGGGGGAGTTTACGTCCCACCT TAAGTCTGGAACATTTTGATAAAAAATGGACTTCGCGGGAAGGAGTGTGGCTTTTTGGTATTAAGCTTAT GGATGATATATCCGTCAATGGATATATTTCTGAAGGTATTATGGTGACCCTATCACCATTTGTCTTCAGA CGATTCGAAACTGATATGTATTCAAAAAACTTTAGCGCTGTTGTCGGAAATAGTAAGCATGACAGGCATT ACTTCAATATAGGACCTGATGCTCCTCTTCTTGATCGGCATGATAGCGTTCCACTAAGGTTTAGAGTGTT TAGGGCATGTAGCCTACATTATGATCTCTGTGTTGCAGGAGGTGGGTATTTTACGGGGATATTTTCAGAG CACTGGAGCATACAAATGTTATTAGTAACAGTGTCACTACTTTCCGGTTTAATGATTTATATTATCATTA TGAACAGAGCAGAACTCAATAGTTCACTATCTGCAAGGTTTGTAAAGGCTTTGAAAAATGAAGCCCTGTC GCTGGTCTATCAACCTATTTACAGAATTGAAGACGGACAGATCTGCGGATTTGAGGCCTTGCTCAGATGG AAAGATGAAAGACTCGGGAATATTAGCCCTGAAGTATTTATACCGCTTTCTGAAAGGGAAGGGTTGCAGG AGGATGTGACTTTATTCGTCATTAACCATGCTATCCGAGAATTTATCCATACTGCTATTCAGAATGAAAT ATTTTTGAGCGTAAACATTAATCCAAGCGATCTTGATTCAGAAAAATTCAGGGATAAACTACTAGGATTA ATTTCTGAATATAACATCCCATATAAAACAATCCTTCTTGAAATTACGGAGCGTCAAGGAGGGGATTTTG AAGGTATGAAAATTCACATTGATAAATATAAAAATCATGGTGTCAGGTTTGCCATCGATGACTTTGGGAC AGGATATTCTAATCTTAATCTGGTAACTGCGCTTGATGTAGATGAAATAAAAATAGACAAATCGCTAACT AGTGCTATTGGTACTGAATCTTTACGATATGATCTTCTTCCCGGACTGCATGAGATGTTCCGCTCCATTG CAGATAAGATTGTGTTTGAGGGTGTAGAGACTCAGGAGCAGGTGAACTATCTGAAGACGTTCTGGCCACA GAGTTATGCTCAGGGCTGGTATTACTCCAGAGCGCTTCCGCTGGAAGAAGCGAGAAAACTTACCATCCGG GAATTGAACTGACCGGCACTTTCAGCGCAAACACTCAGCAATTGCTTGCCGATCAGCTGGTAGAAATTGA AGGGCAGTGTAATCACCTGCTGCTGGCGCAGGGGAAAGCGTTACTGAAAAGTCGTTCTGAACTGCTTAAA TAACAGAGAAACCAGGATGTGATTTGATGCAAAACACGGAACAGCGAATGTAATATTTACTGAGATGAGC GAGCTTTGTCTCATAGTACAGAGGAGTCGGGGCTGCCAGTATCCGGTAGACAGCATTATTCGTCTGCAAC ATAACTCTGCTGGTTGCTGCGGATAACTACTCAGCGCCTTCCAGAGATGGCATTGATGAAAGTAGTAGAA AAAACCTGGAATCTTTGAAGATGTGTCCCTACCTCAGGGGGCTGGAGTGCCATCTGGCCCTAATTCAGCA CAGTGCTGCAGATATGTGTTATGTACAAGTAGACACTGTCTTGAAAATCAGAAGTCGTTGAGGGTTGAAT GCAATTCCAATATTTGCTTCAGCAGATAACGAGGACCGCTATCTATTGCATCTAGTGAATAGGAAGCCGT TTCCATTTTTCTCTAAAGCAACTGGTGTTGACATCCTGAATTCCTTCAAATGTCTGATATTCCTTTTTTC AAAGCACTAGAAAAATACCCGAAAGCTGTTAATCTAATACATTGACTGACCATACAGTACAGCGTTATTT TGTTGGGTTTACTTCACGTACTTTTTATTGTCGGATACTGTTGGGAAAAGACACAAAGAAGCAAGCCATT AAGCGGAATACTGCGTAGGGTTAGAATATACAATTAACTTTTCCGTGATAGGACTAGTGATAACAATATT TCCAGCATGGGCTGACAGGAGTATAGATGGAACTGCTCTCCATAGGTTAATACATCTCGCAATTAACACG CCCGCATATGCCACAAAACTGACGCCCATTCTCGGAATTTTTTTTGCCATTATCTTTCCTGCGGCCTAAT TACTTTCCCCACAACTATGGTTTTTTATTAGAGTCTTCACCACTAAATAAATTATAATAAATTGATTTTA TTAGACATCTGTCAGAATCTATATGGTCAGCACGTATTGCATGCTCTAATGTTTCAAATGCTAAATTATG CGCGGCCTCAGAAAATATCCCAGGCCAACCCTTACTCAGCATAGACAGTCCTTTAAGGACTCTTATCTGT ATCTCCCTCATACCGGCACCATCGCGCGCGACAGGTGAGAAAAAGTCTTCCAGTAGATCGTTATTCTGAA GTGGTGCAACATGAACTGAAGGATATTTCACTTCTATTTCATCAGATTTATTCTGCGCGTAAGTGGAAAG TATACGAACACCTCTGCCAATGACATCAATGGCGGTTCCAGGATCGTTCACTGCGGGGGAAAGTGCCCGG CAGGCTATTTCGGCCATGACGCTAAGACAAAATCGGGGATCCTGAGCAAATGAACGTACATCCGAGACAA TAATCGTCTCAAGTAAATCGGCGCTGATTGATGACTCCTGGCCTTGACTCAGGTACAAAACGGGCATGGA TGGATGGATGAAACTGCCTGGCTGCGCCACGAGGTATACATGACGGGGATCATTGGTCAGCAGCTTGCTA AGTTTCACCATATTAATATATTCAACATAGCCAATCTTCTTCGGATAAACTGCAACCGTTCCTTTCGGCT GTTCATTGTTCTCAAGCCATGGATATCCGCCGAGACAGGGATTTCTTGCTCTCGCAATAAATGTTTCGAT GGCCGCCTGTTCTACTTTTGCCGTTGTCTCACCTACCCTTCCCAGAGAGGTCAAATGCTGTATCCAGCGA AGCAATGTGATGAGGATTAAGGCAATGACAACCAGTGTGACAATGAATAAAATGACTCTCCCCCTTTCTC CATAAGCTCCCATACTGAGGGCAATAATCCCTACCAGACTGAAGAGAAAAGAACCGATGAAGGTGGCCAG TACATTTTGTGTGGTTACGTCTTCAACAACTAAACGCGTAGCTCTGGGAGTCACATTAGTAGTGGCTGAA CCGTAGGCTGTGACCATGATACTCAACGAAAAAGTGGTCACTGCCAGCATACTCGATGCCAGTATGTTCA GAATGTTATCGACTGCTTCCGCACCAACCTTCACGGAAACCGACTCAGGTATCATTGATTTAAAAAGAAT TGATAAAAGGGCCGTTATTATCGCGACAATGGCGAATAACGTTGCCCTGAACCATAGCTTTTTAACTGTC TGCTTCAGAATCCATTTCCAGCGTGAAATCATTCTGCATTCCTCATATTGCGGCCGGGATAAATAATTGC CGCCCCCAGGACGGCATGTTGCTATTAACGAACGAGGTGCAGGAAGTGCAGATGTTTTTCGTACTGGTCC AGTATGTCATTAATCAGCTGCTCCTGGTTCCAGCCCATCACATCATAATTTTGACCGCCTTCTTTGAGAT ATACCTCAGCGCGATAATATCTATGTTGTTCAGTCTGCTGCTCATTATTATCCATCGCGGCGAGCGCGAA GGTCGGTGAGCTATACCCGCGAAGCCTCACTTCATATATAAAATTCAGCTCGTTACCCAAATCGACTTCA AGACGAATACGATCCTCGACTGCGTCACTGATGTGGCTTATCGTCCCCTGCTTGTTCAGCTCTTCCTGAA CCAGCGTCATGGCGGGCTGGATGACGTCGTCCATAAAACGTTTCACAAGAGATCGCTTCGGCAGATACGC GATATTGCGTAACCTTCTCTGCCAGGGAATTGGGTTACGTGCAGCCGTAGGAGCAATTGTCGCCATGCTC AGGCTTTCACGCTTGGTCAAATCCCGGCGCAAAGCTTTTAAAAGTCCGTATATGGATATCAGTAAGATCA CTGAGAAAGGCAATGCACTCGCTATTGTCACTGTTTGCAGCGCACTTAGCCCTCCGGCAAGGAGAAGCGC AATTGCGACAATGCCCATGAGCGAGGCCCAAAATATTCGCTGCCAGACGGGTGTGTTTGCCACTCCACCT GTTGCCAGAGTATCAACTACCATTGCCCCCGAGTCAGCAGACGTGACAAAGAAGACGATGACCATCGCCA TTGCGATGAATGACAGCACGGAAGAGAACGGGAAATGCTCCAGGAAATTAAACAGGGCCAGCGCCACATC CTGCTGAACAGTATTGGCGAGGTCTGTGGCCCCCTGGTTCATAATGAGATAGATCGCGCTGTTACCAAAC ACTGTCATCCACATTAGCGTAAAACCCGCGGGAACAAACAGCACGCCGGTGACAAACTCGCGAATGGTTC GCCCGCGGGAGACCCGTGCGATGAACATCCCCACAAACGGCGACCATGAAAGCCACCATCCCCAGTACAG TAATGTCCAGCCCCCCAGCCATTTGCTCGACTTAGGCTCATACGCGTAAAGGTTGAACGTTTTACTCACC AGTTCCGAAAGATAACCGCCCGTATTTTCCACAAATGACTTCAGCAGAAGCACGGTTGGTCCCAGACACA GGACCAGCGCCAGGAGCAACAACGCCAGACCCAGATTGAGCTCAGACAGGATACGTATTCCCTTATCCAG GCCGGACACCACTGAAATCGTCGCTAACCCCGTGATGACCACGATCAGAATAACCTGCACCGTTTCATTG ATGGGCACCCCGAAAAGATGGTTCAAACCGGCATTCACCTGCAAAACGCCGTAACCCAGCGATGTCGCGA CGCCAAAGACCGTGCCTATAACAGCGAAAATATCAACCGCATGGCCTACAGGCCCGTATATGCGATCGCC AATAATGGGATAGAGTGCGGAGCGCAGAGTTAAAGGCAGACCGTGACGGTAACTGAAGAACGCCAGAATC AGCGCCACAATGGCATAAATTGCCCATGCGTGCAGTCCCCAGTGGAAGAAGGTCAGACGCATTGCTTCCT TGGCTGCCGCAACGGTTTCTGGCGTGCCAACGGGAGGCGAAAGATAATGCATTACAGGTTCGGCAACGCC AAAGAACATCAGGCCGATCCCCATCCCTGCCGAAAAAAGCATCGCAAACCAGGAATGGTAGCTGAAATCA GGCTGCGCATGGTCCGGGCCCAGCTTGATATCACCGTAGCGTGAGAGTCCAAGGAACGTGACACTTAGTA AAATCAGGGCCACAGCAAGGATGTAGAACCAGCTGGCATTCGTGAAGATTTGTTGCTGTAGTAGTTTAAA ATTTTTGTCGGCGACATCCGGGAATACGGCGGCAAAGGCGACAAGAAGGAAAATTAGCAAAGCAGATGTA AAGAATACCGCTTTGTTAATCTGGCTTGTAGACTTCTTCGGGATTGTATCATTATCACTCATAATCATTT ATTCCATTAATTAAATCCGCACTGGATAGACGGTACTACCTTTCACAGAGTAGCAAAGTTCAACTGGCTA TGCGGCGTTAATCGGAACGCATGGTGTAATGAGTTCCGATACAAATCATCCGATATTCGGTAATGACTCC AACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATACAGCTCCACCGATTTTGAG AACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCGCAGATTCAGGTTATGTCGCTCAATGCGCT GAGTGTAACGCTTGCTGATAACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGT CATCCATACCACGACCTCAAAGGCCGACAGCAGGCTCAGAAGACGCTCCAGTGTGGCCAGAGTGCGTTCA CCGAAGACGTGCGCCACAACCGTCCTCCGTATCCTGTCATACGCGTAAAACAGCCAGCGCTGACGTGATT TAGCACCGACGTAGCCCCACTGTTCGTCCATTTCAGCGCAGACAATCACATCACTGCCCGGTTGTATGCG CGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAACCGTGTTGAGGCCAACGCCCATAATGC GTGCACTGGCGCGACATCCGACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGCTGAGA GGCGGTGTAAGTGAACTGTAGTTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCA GTGCTTTTGCCGTTACGCACCACGCCTTCAGTAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCA CGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCAATCATCTGTTCTC CAATGACTGGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCA GGGGGCCAGTCTAGTGATCTTGACCCTCCATCTCCGAACAGCTTTTGTATCTTAAGTTAACGATGTCCGC TGCCGCCGGTATTCCCTCGGGGAGTGATATCCCAGCGCGCTGTGCGGGTGGTTTTCATTGTAATGCGTGA ACGCTACTGCAAGGTTTCGCAGTGCTGTTCTCACATCCGGTTTTGGCATGAACGCGATATAGTCTTCTTT CATCGTTTTCACGAACCGTTCGGCCATGCCATTACTCTGCGGGCTGCTCACCGCTGTTGTGCGGGGCTCC AGATTCAGCTCTCTCGCGAACCTCCACGTTTCATACGCGGTATACGCTGAACCGTTGTCCGTCAGCCACT GCACCGCTGTATCGGGCAACCTGTCGCCGAAGCGCTTTTCCACCGACCTCAGCATCACATCCTGCACGGT TGAACTGTCATAGCCTCCCGTGCTTGCTGCCCAGTCTATGGCCTCACGGTCGCAGCAGTCCAGCGCGAAC GTTACCCGCAGTTTTTCGCCGTTGTCGCAGCCGAACTCGAAGCCATCTGAACACCAGCGCATATCGCTTT CTGCCACCGCTATCTTGCCCTTATGTTCACGCTTCGGTCGCTCTGGTTTGTCATGCAACAACAACAGGTT ATGCTCGCTCATTATCCTGTAAAGCCGTTTGGCGTTCACAGGTGGCTGTCCCTCTGTGCGACGTTGCTTG CGCAGGATGCCCCACACGCGTCGATAACCATAACTCGGCATATCGCTGATGATGTCGAGGATAGCCGACA GTATTTCTTCGTCTGCTTCGTCATTACGCCGGTTACAGCGCTTGTCCTGCCAGTCGGCAGAACGGTTAAT CCGCAGTGACAGCTGCGCACGCGACACGCCCATGGTGCGGCTGACCAGGGCTATTCCCCGTCCTTTGGCA ACAAGGGCGCGTGCGCTATCCATTTTCGCGACTGGCCGTACTCCACGGCTTCTTTCAGGATCTCAACTTC CATCGTCTTCTTGCCCAGAAGGCGCTGAAGTTCCCGGACCTGCTTCAGAGCAGCAGTAAGCTCAGAAGCA GGAACGACTTCCTCTCCGGCCGCAACGGCGGTGAGGCTGCCTTCCTGATATTGCTTCTTCCACTTAAACA GCAGGCTGGGCTGGATACCATGCAGGCGGGCGACATGGGAGACATTCATGCCCGGCTCCATCGTCTGCTG GATAATGGCGATCTTCTCCTGAGGAGTTTTACGTTTACGGGCTTCTTGCCCTAACAGGATCCCGGTCATC TCAAAATTGGCGTTAGTGTTAGACATATATTCAAGCCTATCTCTTATCTGGAGATACAGCTACTGTCCGG TGTTTCAGGGGGCTACATCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGC CGCAGTCGGTAACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTG GGGCTACGTCGGTGCTAAATCACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTT GTGGCGCACGTCTTCGGTGAACGCACTCTGGCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTG AGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTA
Region Details
| Region | 1 |
| Region Length | 21.8Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | transposase,recombinase |
| Region Position | 20-21858 |
| # tRNA | 0 |
| # Total Proteins | 6 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | yes |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Salmon_SJ46_NC_031129(3) PHAGE_Entero_N15_NC_001901(2) PHAGE_Yersin_PY54_NC_005069(2) PHAGE_Entero_P1_NC_005856(2) PHAGE_Klebsi_phiKO2_NC_005857(2) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Salmon_SSU5_NC_018843(1) PHAGE_Brevib_Jenst_NC_028805(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 50% |
| GC % | 46.92% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|LYNH01000039.1| Klebsiella pneumoniae strain SKLX2467 plasmid pSKLX2467 73919, gc%: 49.85%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 20..99 | attL | 0.0 | Showinfo_outline |
| 2 | complement(1123..1779) | PROPHAGE_Xantho_33913: IS1477 transposase; A8V41_15345; phage(gi77747809) | 8.90e-66 | Showinfo_outline |
| 3 | complement(1806..2069) | PROPHAGE_Xantho_33913: IS1404 transposase; A8V41_15350; phage(gi21232568) | 6.59e-33 | Showinfo_outline |
| 4 | complement(3112..4083) | PHAGE_Entero_N15_NC_001901: ParB; A8V41_15355; phage(gi9630491) | 3.24e-105 | Showinfo_outline |
| 5 | complement(4083..5249) | PHAGE_Entero_N15_NC_001901: plasmid partition protein SopA; A8V41_15360; phage(gi9630492) | 0.0 | Showinfo_outline |
| 6 | 6001..7011 | PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; A8V41_15365; phage(gi410491479) | 9.08e-116 | Showinfo_outline |
| 7 | complement(7729..8469) | PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; A8V41_15370; phage(gi971744895) | 1.86e-05 | Showinfo_outline |
| 8 | 21858..21937 | attR | 0.0 | Showinfo_outline |
Sequence
>20..99
AACAGCAAGCGTTACACTCAGCGCATTGAGCGACATAACCTGAATCTGCGACAACATCTGGCAAGGCTGGGACGGAAGTC
Sequence
>complement(1123..1779)
KlebsiellapneumoniaeMLMCDATGMSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGLGVKRRRRRKVLATERLPLLRPAAPNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECLTVTVAFGISGVQVSRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGSQRRTDLLRALTDDFAMNA
Sequence
>complement(1806..2069)
KlebsiellapneumoniaeMKKRFSDEQIISILREAEAGVPARELCRKHAISDATFYTWRKKYGGMEVPEVKRLKSLEEENARLKKLLAEAMLDKEALQVALGRKY
Sequence
>complement(3112..4083)
KlebsiellapneumoniaeMKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPSPRVNLSSRHQFAPGATALYKGDKMVLNLDRSRIPVECIEKIEAILKELEKPGV
Sequence
>complement(4083..5249)
KlebsiellapneumoniaeMGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPADPHLMLRLAIETIAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Sequence
>6001..7011
KlebsiellapneumoniaeMTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLFVPTLKSTGKSKANRKNVTDATEELVQLSIAKSEGYTDVKITGSRLDMDTDFKVWLGIIRSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRERLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRATYFSVHYRNPKLISGPVKVPRNEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKPEN
Sequence
>complement(7729..8469)
KlebsiellapneumoniaeMNSIIPLQNSPERVSLLPIAPGVDFATAVALRRMATSTGATPAYLLAPEVSALLWYMPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLVPLTDASFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKHAVKRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRSLPPAG
Sequence
>21858..21937
AACAGCAAGCGTTACACTCAGCGCATTGAGCGACATAACCTGAATCTGCGACAACATCTGGCAAGGCTGGGACGGAAGTC
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 73919 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 20
ORF Stop: 99
Strand: Forward
Protein Sequence: AACAGCAAGCGTTACACTCAGCGCATTGAGCGACATAACCTGAATCTGCGACAACATCTGGCAAGGCTGGGACGGAAGTC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: A8V41_15345 (Region 1)
Locus: A8V41_15345ORF Start: 1123
ORF Stop: 1779
Strand: Backward
Protein Sequence: MLMCDATGMSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGLGVKRRRRRKVLATERLPLLRPAAPNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECLTVTVAFGISGVQVSRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGSQRRTDLLRALTDDFAMNA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: A8V41_15345, IS1477 transposase, phage(gi77747809), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 8.90e-66
Locus 3: A8V41_15350 (Region 1)
Locus: A8V41_15350ORF Start: 1806
ORF Stop: 2069
Strand: Backward
Protein Sequence: MKKRFSDEQIISILREAEAGVPARELCRKHAISDATFYTWRKKYGGMEVPEVKRLKSLEEENARLKKLLAEAMLDKEALQVALGRKY
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: A8V41_15350, IS1404 transposase, phage(gi21232568), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 6.59e-33
Locus 4: A8V41_15355 (Region 1)
Locus: A8V41_15355ORF Start: 3112
ORF Stop: 4083
Strand: Backward
Protein Sequence: MKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPSPRVNLSSRHQFAPGATALYKGDKMVLNLDRSRIPVECIEKIEAILKELEKPGV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A8V41_15355, ParB, phage(gi9630491), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 3.24e-105
Locus 5: A8V41_15360 (Region 1)
Locus: A8V41_15360ORF Start: 4083
ORF Stop: 5249
Strand: Backward
Protein Sequence: MGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPADPHLMLRLAIETIAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A8V41_15360, plasmid partition protein SopA, phage(gi9630492), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 0.0
Locus 6: A8V41_15365 (Region 1)
Locus: A8V41_15365ORF Start: 6001
ORF Stop: 7011
Strand: Forward
Protein Sequence: MTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLFVPTLKSTGKSKANRKNVTDATEELVQLSIAKSEGYTDVKITGSRLDMDTDFKVWLGIIRSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRERLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRATYFSVHYRNPKLISGPVKVPRNEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKPEN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A8V41_15365, putative replication protein RepA, phage(gi410491479), PHAGE_Salmon_SSU5_NC_018843
Homolog/Ortholog E-Value: 9.08e-116
Locus 7: A8V41_15370 (Region 1)
Locus: A8V41_15370ORF Start: 7729
ORF Stop: 8469
Strand: Backward
Protein Sequence: MNSIIPLQNSPERVSLLPIAPGVDFATAVALRRMATSTGATPAYLLAPEVSALLWYMPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRARRGRPPKDEVRLVPLTDASFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKHAVKRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRSLPPAG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A8V41_15370, putative recombinase XerD, phage(gi971744895), PHAGE_Brevib_Jenst_NC_028805
Homolog/Ortholog E-Value: 1.86e-05
Locus 8: attR (Region 1)
Locus: attRORF Start: 21858
ORF Stop: 21937
Strand: Forward
Protein Sequence: AACAGCAAGCGTTACACTCAGCGCATTGAGCGACATAACCTGAATCTGCGACAACATCTGGCAAGGCTGGGACGGAAGTC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download