Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1051445946

GenInfo (GI) Number: 0000000000

Download Results: 1051445946.PHASTER.zip

gi|00000000|ref|CP016810.1| Klebsiella pneumoniae strain DHQP1002001 plasmid 307743, gc%: 51.74%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 2 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
126.5Kbintact1102170736-97287 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(3)53.53%Show info_outline
228.5Kbintact1002283773-112278 info_outlinePHAGE_Entero_P1_NC_005856(3)50.46%Show info_outline
334.1Kbquestionable7022138616-172769 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(2)49.10%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016810.1| Klebsiella pneumoniae strain DHQP1002001 plasmid 307743, gc%: 51.74%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 29 CDS

#CDS PositionBLAST HitE-ValueSequence
170736..71440PROPHAGE_Brucel_1330: transposase, putative; A8C02_00350; phage(gi23502708)1.98e-53Showinfo_outline
272072..72809PHAGE_Entero_phi80_NC_021190: DNA invertase, resolvase, site-specific recombinase Pin; A8C02_00355; phage(gi824479608)1.46e-13Showinfo_outline
372806..73030hypothetical protein; A8C02_003600.0Showinfo_outline
473367..73780hypothetical protein; A8C02_003650.0Showinfo_outline
5complement(73752..74588)aminoglycoside O-phosphotransferase APH(6)-Id; A8C02_003700.0Showinfo_outline
6complement(74588..75391)APH(3'') family aminoglycoside O-phosphotransferase; A8C02_003750.0Showinfo_outline
7complement(75452..76267)dihydropteroate synthase; A8C02_003800.0Showinfo_outline
876597..76773PHAGE_Salmon_epsilon15_NC_004775: integrase; A8C02_00385; phage(gi30387406)2.12e-10Showinfo_outline
9complement(76955..77959)PROPHAGE_Shewan_MR-1: IS110 family transposase; A8C02_00390; phage(gi24375433)1.05e-58Showinfo_outline
10complement(78038..80344)PROPHAGE_Xantho_33913: Tn5041 transposase; A8C02_00395; phage(gi21231545)1.65e-46Showinfo_outline
11complement(80390..81094)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00400; phage(gi23502708)1.98e-53Showinfo_outline
1281111..81157attL0.0Showinfo_outline
1381119..81301hypothetical protein; A8C02_004050.0Showinfo_outline
14complement(81335..82039)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00410; phage(gi23502708)1.98e-53Showinfo_outline
1582056..82102attL0.0Showinfo_outline
1682094..82516hypothetical protein; A8C02_004150.0Showinfo_outline
1782611..82901PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; A8C02_00420; phage(gi971760362)3.55e-09Showinfo_outline
1882984..82997attL0.0Showinfo_outline
1983047..83751PROPHAGE_Brucel_1330: transposase, putative; A8C02_00425; phage(gi23502708)1.98e-53Showinfo_outline
20complement(83943..84542)PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; A8C02_00430; phage(gi985761240)4.91e-16Showinfo_outline
2184589..84602attR0.0Showinfo_outline
22complement(84641..85345)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00435; phage(gi23502708)4.77e-51Showinfo_outline
2385362..85408attR0.0Showinfo_outline
2485362..85408attR0.0Showinfo_outline
2585364..85408attL0.0Showinfo_outline
2685408..85758PHAGE_Mycoba_Xeno_NC_031243: hypothetical protein; A8C02_00440; phage(gi100033)1.60e-07Showinfo_outline
27complement(86058..87134)transposase; A8C02_004450.0Showinfo_outline
28complement(87676..89184)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; A8C02_00450; phage(gi100001)2.19e-48Showinfo_outline
2997287..97331attR0.0Showinfo_outline

Region 2, total 28 CDS

#CDS PositionBLAST HitE-ValueSequence
183773..83803attL0.0Showinfo_outline
284589..84602attL0.0Showinfo_outline
3complement(90243..90545)PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; A8C02_00460; phage(gi24373865)4.00e-10Showinfo_outline
4complement(91346..91972)PHAGE_Burkho_KS14_NC_015273: gp40; A8C02_00465; phage(gi327198309)2.22e-21Showinfo_outline
592435..92446attL0.0Showinfo_outline
6complement(92597..93472)PHAGE_Entero_P1_NC_005856: RepA; A8C02_00470; phage(gi46401683)1.41e-109Showinfo_outline
7complement(93884..94510)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A8C02_00475; phage(gi431811050)1.69e-95Showinfo_outline
8complement(94569..95399)PROPHAGE_Xantho_33913: IS1477 transposase; A8C02_00480; phage(gi77747809)3.45e-100Showinfo_outline
9complement(95426..95689)PROPHAGE_Xantho_33913: IS1404 transposase; A8C02_00485; phage(gi21232568)1.21e-32Showinfo_outline
10complement(95787..96491)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00490; phage(gi23502708)1.98e-53Showinfo_outline
1196876..97271PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8C02_00495; phage(gi557307573)7.98e-85Showinfo_outline
1297368..97805restriction endonuclease; A8C02_005000.0Showinfo_outline
13complement(98027..98293)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8C02_00505; phage(gi557307573)3.66e-54Showinfo_outline
1498329..98340attR0.0Showinfo_outline
1598398..99831PHAGE_Burkho_KL3_NC_015266: gp47; A8C02_00510; phage(gi327198092)4.72e-132Showinfo_outline
16complement(99865..101073)PHAGE_Burkho_KL3_NC_015266: gp45; A8C02_00515; phage(gi327198090)1.15e-40Showinfo_outline
17complement(101340..102104)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00520; phage(gi23502708)3.18e-55Showinfo_outline
18complement(102247..102513)mobilization protein; A8C02_005250.0Showinfo_outline
19complement(102734..103207)PHAGE_Bacill_Blue_NC_031056: hypothetical protein; A8C02_00530; phage(gi100007)3.31e-23Showinfo_outline
20103363..104376PHAGE_Mycoba_Butters_NC_021061: integrase; A8C02_00535; phage(gi479336499)2.05e-12Showinfo_outline
21104769..105338PHAGE_Burkho_KS14_NC_015273: gp6; A8C02_00540; phage(gi327198275)3.60e-47Showinfo_outline
22106095..107564PHAGE_Salmon_7_11_NC_015938: hypothetical protein; A8C02_00545; phage(gi345461254)2.54e-27Showinfo_outline
23complement(108084..108821)hypothetical protein; A8C02_005500.0Showinfo_outline
24complement(108959..109645)NYN domain-containing protein; A8C02_005550.0Showinfo_outline
25complement(110138..111385)hypothetical protein; A8C02_005600.0Showinfo_outline
26111489..111502attR0.0Showinfo_outline
27111552..112256PROPHAGE_Brucel_1330: transposase, putative; A8C02_00565; phage(gi23502708)4.77e-51Showinfo_outline
28112278..112308attR0.0Showinfo_outline

Region 3, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
1138616..138629attL0.0Showinfo_outline
2138867..138878attL0.0Showinfo_outline
3complement(148627..149409)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; A8C02_00750; phage(gi764159894)1.80e-06Showinfo_outline
4complement(149409..149741)hypothetical protein; A8C02_007550.0Showinfo_outline
5complement(149748..150104)hypothetical protein; A8C02_007600.0Showinfo_outline
6complement(150172..150501)hypothetical protein; A8C02_007650.0Showinfo_outline
7complement(150529..150837)hypothetical protein; A8C02_007700.0Showinfo_outline
8complement(150883..151089)hypothetical protein; A8C02_007750.0Showinfo_outline
9151754..151984virulence factor; A8C02_007800.0Showinfo_outline
10151981..152397twitching motility protein PilT; A8C02_007850.0Showinfo_outline
11complement(152438..153315)restriction endonuclease; A8C02_007900.0Showinfo_outline
12153974..155251colicin V secretion protein CvaA; A8C02_007950.0Showinfo_outline
13155241..157349PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; A8C02_00800; phage(gi9630145)2.80e-45Showinfo_outline
14157349..157984protease; A8C02_008050.0Showinfo_outline
15158170..158400hypothetical protein; A8C02_008100.0Showinfo_outline
16complement(158630..158908)hypothetical protein; A8C02_008150.0Showinfo_outline
17159003..159266hypothetical protein; A8C02_008200.0Showinfo_outline
18complement(159448..160152)PROPHAGE_Brucel_1330: transposase, putative; A8C02_00825; phage(gi23502708)1.98e-53Showinfo_outline
19160143..160409mercury resistance protein; A8C02_008300.0Showinfo_outline
20160475..160687transposase; A8C02_008350.0Showinfo_outline
21160818..161378PHAGE_Escher_pro483_NC_028943: DNA invertase; A8C02_00840; phage(gi971758535)6.23e-33Showinfo_outline
22161381..162082PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C02_00845; phage(gi100060)4.99e-83Showinfo_outline
23162092..162103attR0.0Showinfo_outline
24162119..162823PROPHAGE_Brucel_1330: transposase, putative; A8C02_00850; phage(gi23502708)1.98e-53Showinfo_outline
25complement(162874..163284)PHAGE_Escher_P483_NC_028822: internal core protein; A8C02_00855; phage(gi971746570)5.87e-05Showinfo_outline
26172769..172782attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 307743 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download