Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1051446430

GenInfo (GI) Number: 0000000000

Download Results: 1051446430.PHASTER.zip

gi|00000000|ref|CP016812.1| Klebsiella pneumoniae strain DHQP1002001 plasmid 65887, gc%: 54.96%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.1Kbincomplete20121347-23544 info_outlinePHAGE_Entero_P1_NC_005856(3)52.81%Show info_outline
244.7Kbintact110181338-46092 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)53.27%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016812.1| Klebsiella pneumoniae strain DHQP1002001 plasmid 65887, gc%: 54.96%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
11347..1364attL0.0Showinfo_outline
2complement(3059..4024)PHAGE_Caulob_karma_NC_019410: putative ArdC-like antirestriction protein; A8C02_27580; phage(gi414089431)2.12e-81Showinfo_outline
3complement(4232..4501)hypothetical protein; A8C02_275850.0Showinfo_outline
4complement(4494..5978)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; A8C02_27590; phage(gi100001)1.95e-36Showinfo_outline
56387..6818PHAGE_Cronob_ENT39118_NC_019934: protein umuD; A8C02_27595; phage(gi431811072)5.32e-34Showinfo_outline
66818..8089PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A8C02_27600; phage(gi431811050)0.0Showinfo_outline
7complement(8171..9145)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C02_27605; phage(gi100010)1.82e-116Showinfo_outline
8complement(9145..10350)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C02_27610; phage(gi100009)0.0Showinfo_outline
910765..11034hypothetical protein; A8C02_276150.0Showinfo_outline
10complement(11391..12257)PHAGE_Burkho_KS14_NC_015273: gp37; A8C02_27620; phage(gi327198306)1.71e-17Showinfo_outline
1112792..12896hypothetical protein; A8C02_276250.0Showinfo_outline
1213025..13282hypothetical protein; A8C02_276300.0Showinfo_outline
13complement(13340..14116)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; A8C02_27635; phage(gi764159894)5.08e-08Showinfo_outline
1423544..23561attR0.0Showinfo_outline

Region 2, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
11338..1351attL0.0Showinfo_outline
215819..16049virulence factor; A8C02_276550.0Showinfo_outline
316046..16330VagD; A8C02_276600.0Showinfo_outline
416342..17046PROPHAGE_Brucel_1330: transposase, putative; A8C02_27665; phage(gi23502708)1.98e-53Showinfo_outline
517089..17101attL0.0Showinfo_outline
617199..18632PHAGE_Burkho_KL3_NC_015266: gp47; A8C02_27670; phage(gi327198092)4.72e-132Showinfo_outline
7complement(18666..19874)PHAGE_Burkho_KL3_NC_015266: gp45; A8C02_27675; phage(gi327198090)1.15e-40Showinfo_outline
8complement(20141..20905)PROPHAGE_Brucel_1330: transposase, putative; A8C02_27680; phage(gi23502708)3.18e-55Showinfo_outline
920876..22198PROPHAGE_Xantho_33913: Tn5041 transposase; A8C02_27685; phage(gi21231545)7.87e-48Showinfo_outline
1022277..23281PROPHAGE_Shewan_MR-1: IS110 family transposase; A8C02_27690; phage(gi24375433)1.20e-57Showinfo_outline
1123592..23969GNAT family N-acetyltransferase; A8C02_276950.0Showinfo_outline
12complement(24170..24829)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; A8C02_27700; phage(gi937456276)4.80e-166Showinfo_outline
1325108..25371PHAGE_Entero_P1_NC_005856: InsA; A8C02_27705; phage(gi46401643)3.99e-60Showinfo_outline
1425453..25893PHAGE_Stx2_c_1717_NC_011357: truncated transposase; A8C02_27710; phage(gi209447151)1.30e-12Showinfo_outline
1525890..26240PHAGE_Stx2_c_1717_NC_011357: transposase; A8C02_27715; phage(gi209447152)1.52e-49Showinfo_outline
1626271..27863PHAGE_Stx2_c_1717_NC_011357: transposase; A8C02_27720; phage(gi209447153)0.0Showinfo_outline
1727962..28339PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8C02_27725; phage(gi557307573)3.45e-87Showinfo_outline
18complement(28503..29759)EreA family erythromycin esterase; A8C02_277300.0Showinfo_outline
19complement(30005..30457)NAD(+)--rifampin ADP-ribosyltransferase; A8C02_277350.0Showinfo_outline
2030630..31643PHAGE_Mycoba_Butters_NC_021061: integrase; A8C02_27740; phage(gi479336499)2.05e-12Showinfo_outline
2140505..40517attR0.0Showinfo_outline
2246092..46105attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 65887 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download