Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1052520069

GenInfo (GI) Number: 0000000000

Download Results: 1052520069.PHASTER.zip

gi|00000000|ref|CP015823.1| Klebsiella pneumoniae isolate blood sample 2 plasmid 1, complete 205221, gc%: 52.89%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.4Kbintact1302474356-110837 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)55.50%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP015823.1| Klebsiella pneumoniae isolate blood sample 2 plasmid 1, complete 205221, gc%: 52.89%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 28 CDS

#CDS PositionBLAST HitE-ValueSequence
174356..74368attL0.0Showinfo_outline
2complement(77257..77754)PHAGE_Bacill_Bp8p_C_NC_029121: putative dihydrofolate reductase; A8N26_28045; phage(gi985761486)1.16e-33Showinfo_outline
377899..78912PHAGE_Mycoba_Butters_NC_021061: integrase; A8N26_28050; phage(gi479336499)2.26e-12Showinfo_outline
4complement(78871..79050)transcriptional regulator; A8N26_280550.0Showinfo_outline
579187..79465transposase; A8N26_280600.0Showinfo_outline
679591..80151PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A8N26_28065; phage(gi100061)7.62e-69Showinfo_outline
780154..83120PROPHAGE_Xantho_33913: Tn5041 transposase; A8N26_28070; phage(gi21231545)8.67e-46Showinfo_outline
883187..83564acetyltransferase; A8N26_280750.0Showinfo_outline
9complement(83765..84424)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; A8N26_28080; phage(gi937456276)3.11e-167Showinfo_outline
1084897..85400PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8N26_28085; phage(gi557307573)1.15e-118Showinfo_outline
1185632..87020PHAGE_Erwini_vB_EamM_Asesino_NC_031107: chaperone for long tail fiber formation; A8N26_28090; phage(gi100168)4.27e-05Showinfo_outline
1287013..88125PHAGE_Campyl_CP21_NC_019507: radical SAM domain-containing protein; A8N26_28095; phage(gi422935302)3.17e-07Showinfo_outline
13complement(88261..88440)hypothetical protein; A8N26_281000.0Showinfo_outline
1489314..89691PHAGE_Stx2_c_1717_NC_011357: truncated transposase; A8N26_28105; phage(gi209447151)2.21e-76Showinfo_outline
1589688..90035PHAGE_Stx2_c_1717_NC_011357: transposase; A8N26_28110; phage(gi209447152)8.81e-76Showinfo_outline
1690085..91622PHAGE_Stx2_c_1717_NC_011357: transposase; A8N26_28115; phage(gi209447153)0.0Showinfo_outline
1791690..92037PHAGE_Stx2_c_1717_NC_011357: transposase; A8N26_28120; phage(gi209447153)2.73e-67Showinfo_outline
1892065..92077attR0.0Showinfo_outline
1993517..93528attL0.0Showinfo_outline
20complement(93858..95591)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; A8N26_28125; phage(gi371496158)1.53e-19Showinfo_outline
21complement(95599..96546)acetamidase; A8N26_281300.0Showinfo_outline
22complement(96591..98195)peptide ABC transporter substrate-binding protein; A8N26_281350.0Showinfo_outline
23complement(98208..99128)glutathione ABC transporter permease GsiC; A8N26_281400.0Showinfo_outline
24complement(99128..99976)peptide ABC transporter permease; A8N26_281450.0Showinfo_outline
25complement(99973..100566)histidine kinase; A8N26_281500.0Showinfo_outline
26complement(100563..101690)regulator; A8N26_281550.0Showinfo_outline
27complement(101975..102142)integrase; A8N26_281600.0Showinfo_outline
28110837..110848attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 205221 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download