Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1057968381

GenInfo (GI) Number: 0000000000

Download Results: 1057968381.PHASTER.zip

gi|00000000|ref|CP016921.1| Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920, 283369, gc%: 46.41%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
113.7Kbincomplete30773245-87006 info_outlinePHAGE_Salmon_SJ46_NC_031129(3)54.12%Show info_outline
230.8Kbquestionable8025189539-220396 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(3)48.18%Show info_outline
334.3Kbincomplete5011196105-230426 info_outlinePHAGE_Escher_ECML_117_NC_025441(2)48.23%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016921.1| Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920, 283369, gc%: 46.41%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 9 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(73245..73742)PHAGE_Bacill_Bp8p_C_NC_029121: putative dihydrofolate reductase; A8C11_00825; phage(gi985761486)1.16e-33Showinfo_outline
273770..73783attL0.0Showinfo_outline
373887..74900PHAGE_Mycoba_Shipwreck_NC_031261: hypothetical protein; A8C11_00830; phage(gi100032)1.63e-11Showinfo_outline
4complement(74859..75038)transcriptional regulator; A8C11_008350.0Showinfo_outline
575222..75779PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A8C11_00840; phage(gi100061)6.01e-65Showinfo_outline
675782..78754PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C11_00845; phage(gi100060)0.0Showinfo_outline
778833..79837PROPHAGE_Shewan_MR-1: IS110 family transposase; A8C11_00850; phage(gi24375433)1.28e-58Showinfo_outline
880753..81637PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C11_00855; phage(gi100007)9.72e-57Showinfo_outline
987006..87019attR0.0Showinfo_outline

Region 2, total 31 CDS

#CDS PositionBLAST HitE-ValueSequence
1189539..189550attL0.0Showinfo_outline
2189655..190524PHAGE_Marino_P12026_NC_018269: putative DNA modification methylase; A8C11_01345; phage(gi399528347)2.15e-14Showinfo_outline
3190578..190898PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C11_01350; phage(gi410491515)7.00e-36Showinfo_outline
4190979..191293hypothetical protein; A8C11_013550.0Showinfo_outline
5191414..191665PHAGE_Entero_mEp460_NC_019716: hypothetical protein; A8C11_01360; phage(gi428782346)8.97e-33Showinfo_outline
6191831..192049PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; A8C11_01365; phage(gi514051015)8.75e-28Showinfo_outline
7192143..192640PHAGE_Escher_Av_05_NC_025830: hypothetical protein; A8C11_01370; phage(gi730985103)9.42e-37Showinfo_outline
8193527..194171PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; A8C11_01375; phage(gi100004)7.13e-10Showinfo_outline
9194172..194495PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; A8C11_01380; phage(gi327198613)3.37e-19Showinfo_outline
10194567..194578attL0.0Showinfo_outline
11194588..194974PHAGE_Salmon_SPN3UB_NC_019545: putative Eaa protein; A8C11_01385; phage(gi423262432)1.10e-22Showinfo_outline
12195673..195888PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C11_01390; phage(gi410491522)7.34e-18Showinfo_outline
13196226..196708PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; A8C11_01395; phage(gi966201466)2.02e-07Showinfo_outline
14197020..197033attL0.0Showinfo_outline
15complement(197072..197776)PROPHAGE_Brucel_1330: transposase, putative; A8C11_01400; phage(gi23502708)1.98e-53Showinfo_outline
16complement(198322..199335)PHAGE_Mycoba_Butters_NC_021061: integrase; A8C11_01405; phage(gi479336499)2.05e-12Showinfo_outline
17199491..199964PHAGE_Bacill_Blue_NC_031056: hypothetical protein; A8C11_01410; phage(gi100007)3.31e-23Showinfo_outline
18200185..200451mobilization protein; A8C11_014150.0Showinfo_outline
19200594..201358PROPHAGE_Brucel_1330: transposase, putative; A8C11_01420; phage(gi23502708)3.18e-55Showinfo_outline
20201625..202833PHAGE_Burkho_KL3_NC_015266: gp45; A8C11_01425; phage(gi327198090)1.15e-40Showinfo_outline
21complement(202867..204300)PHAGE_Burkho_KL3_NC_015266: gp47; A8C11_01430; phage(gi327198092)4.72e-132Showinfo_outline
22204405..204671PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8C11_01435; phage(gi557307573)3.66e-54Showinfo_outline
23complement(204893..205330)restriction endonuclease; A8C11_014400.0Showinfo_outline
24205367..205380attR0.0Showinfo_outline
25205430..206134PROPHAGE_Brucel_1330: transposase, putative; A8C11_01445; phage(gi23502708)1.98e-53Showinfo_outline
26complement(206188..206628)type B chloramphenicol O-acetyltransferase; A8C11_014500.0Showinfo_outline
27206757..206768attR0.0Showinfo_outline
28complement(206766..207596)class D beta-lactamase; A8C11_014550.0Showinfo_outline
29complement(207727..208326)PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; A8C11_01460; phage(gi985761240)4.91e-16Showinfo_outline
30complement(208425..209129)PROPHAGE_Brucel_1330: transposase, putative; A8C11_01465; phage(gi23502708)1.98e-53Showinfo_outline
31220396..220407attR0.0Showinfo_outline

Region 3, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
1196105..196116attL0.0Showinfo_outline
2210677..213025PROPHAGE_Xantho_306: Tn5044 transposase; A8C11_01480; phage(gi21243163)3.30e-96Showinfo_outline
3213101..213502phage shock protein operon transcriptional activator; A8C11_014850.0Showinfo_outline
4213598..214242PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; A8C11_01490; phage(gi971764756)1.18e-17Showinfo_outline
5complement(214334..215065)PHAGE_Escher_ECML_117_NC_025441: putative 3-oxoacyl-(acyl-carrier-protein) reductase; A8C11_01495; phage(gi725950210)7.76e-07Showinfo_outline
6complement(215115..215819)PROPHAGE_Brucel_1330: transposase, putative; A8C11_01500; phage(gi23502708)1.98e-53Showinfo_outline
7216265..216450hypothetical protein; A8C11_015050.0Showinfo_outline
8216720..216992PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; A8C11_01510; phage(gi725950145)6.28e-19Showinfo_outline
9217761..218210phage tail protein; A8C11_015150.0Showinfo_outline
10218280..218888PHAGE_Caulob_CcrColossus_NC_019406: putative methyltransferase; A8C11_01520; phage(gi414088386)4.19e-33Showinfo_outline
11219176..219631hypothetical protein; A8C11_015250.0Showinfo_outline
12220515..221756PHAGE_Salmon_9NA_NC_025443: hypothetical protein; A8C11_01530; phage(gi712914037)1.35e-14Showinfo_outline
13230426..230437attR0.0Showinfo_outline
Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 283369 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download