Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1057973788

GenInfo (GI) Number: 0000000000

Download Results: 1057973788.PHASTER.zip

gi|00000000|ref|CP016924.1| Klebsiella pneumoniae isolate 23 plasmid pIncFIB_DHQP1400954, 111539, gc%: 48.93%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1111.4Kbintact15011628-111488 info_outlinePHAGE_Salmon_SSU5_NC_018843(94)48.93%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016924.1| Klebsiella pneumoniae isolate 23 plasmid pIncFIB_DHQP1400954, 111539, gc%: 48.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 119 CDS

#CDS PositionBLAST HitE-ValueSequence
128..456PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A8C23_00005; phage(gi410491416)1.97e-40Showinfo_outline
2504..938PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00010; phage(gi410491417)1.48e-84Showinfo_outline
3938..1771PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00015; phage(gi410491418)2.10e-178Showinfo_outline
41869..2213PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00020; phage(gi410491419)3.73e-73Showinfo_outline
52204..2677PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00025; phage(gi410491420)2.14e-103Showinfo_outline
62679..3071PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00030; phage(gi410491421)2.03e-63Showinfo_outline
73139..3885PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A8C23_00035; phage(gi410491422)2.40e-146Showinfo_outline
83947..4264PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00040; phage(gi410491423)1.71e-64Showinfo_outline
94025..4042attL0.0Showinfo_outline
104381..4614PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00045; phage(gi410491424)4.30e-46Showinfo_outline
114622..9157PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; A8C23_00050; phage(gi410491425)0.0Showinfo_outline
129201..9536PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; A8C23_00055; phage(gi410491426)5.19e-67Showinfo_outline
139623..10321PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; A8C23_00060; phage(gi410491427)2.50e-158Showinfo_outline
1410314..11111PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_00065; phage(gi410491428)2.92e-175Showinfo_outline
1511099..11710PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_00070; phage(gi410491429)2.10e-112Showinfo_outline
1611727..23897PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_00075; phage(gi410491430)0.0Showinfo_outline
1723950..25395PHAGE_Klebsi_Sushi_NC_028774: tail fiber; A8C23_00080; phage(gi971742192)1.64e-48Showinfo_outline
1825491..25814PHAGE_Salmon_SSU5_NC_018843: putative holin; A8C23_00085; phage(gi410491436)3.68e-70Showinfo_outline
1925828..26520PHAGE_Salmon_SSU5_NC_018843: putative endolysin; A8C23_00090; phage(gi410491437)1.50e-154Showinfo_outline
2026523..26774PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00095; phage(gi410491438)5.95e-37Showinfo_outline
2126725..26922PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; A8C23_00100; phage(gi410491439)8.74e-25Showinfo_outline
22complement(26977..27351)PHAGE_Bacill_G_NC_023719: gp236; A8C23_00105; phage(gi593777692)2.25e-05Showinfo_outline
2327738..28403PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; A8C23_00110; phage(gi410491443)8.71e-132Showinfo_outline
2428403..28765PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00115; phage(gi410491444)3.41e-63Showinfo_outline
2528838..29017hypothetical protein; A8C23_001200.0Showinfo_outline
2629171..29605PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00125; phage(gi410491445)7.97e-28Showinfo_outline
2729598..30008PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00130; phage(gi410491446)5.39e-28Showinfo_outline
2830191..30916PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00135; phage(gi410491448)1.04e-162Showinfo_outline
2930981..32321PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; A8C23_00140; phage(gi410491449)0.0Showinfo_outline
3032475..33593PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; A8C23_00145; phage(gi410491450)0.0Showinfo_outline
31complement(33636..34802)hypothetical protein; A8C23_001500.0Showinfo_outline
3235091..35879PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00155; phage(gi410491452)4.03e-93Showinfo_outline
3335959..36426PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00160; phage(gi410491453)3.40e-67Showinfo_outline
3436426..37748PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; A8C23_00165; phage(gi410491454)0.0Showinfo_outline
3537748..37924PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00170; phage(gi410491455)3.07e-23Showinfo_outline
3637908..38123PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00175; phage(gi410491456)1.61e-29Showinfo_outline
3738271..38687hypothetical protein; A8C23_001800.0Showinfo_outline
3839617..39691tRNA0.0Showinfo_outline
39complement(39983..41572)hypothetical protein; A8C23_001900.0Showinfo_outline
4041813..42586PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; A8C23_00195; phage(gi589287556)6.34e-119Showinfo_outline
4142717..42962PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; A8C23_00200; phage(gi371671381)3.93e-15Showinfo_outline
4243057..43662hypothetical protein; A8C23_002050.0Showinfo_outline
4343672..44082PHAGE_Escher_HK639_NC_016158: hypothetical protein; A8C23_00210; phage(gi356870618)3.88e-17Showinfo_outline
44complement(44147..44503)hypothetical protein; A8C23_002150.0Showinfo_outline
4544856..45956PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; A8C23_00220; phage(gi169257266)5.68e-23Showinfo_outline
46complement(45951..46331)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; A8C23_00225; phage(gi100041)5.82e-10Showinfo_outline
4746605..46817hypothetical protein; A8C23_002300.0Showinfo_outline
4846934..49213PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A8C23_00235; phage(gi410491459)0.0Showinfo_outline
4949310..50542PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A8C23_00240; phage(gi410491460)0.0Showinfo_outline
5050723..54241PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; A8C23_00245; phage(gi410491462)0.0Showinfo_outline
5154238..54681PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00250; phage(gi410491463)2.11e-77Showinfo_outline
52complement(54781..55755)PHAGE_Lactoc_TP901_1_NC_002747: ORF54; A8C23_00255; phage(gi13786585)7.45e-05Showinfo_outline
53complement(55860..56507)hypothetical protein; A8C23_002600.0Showinfo_outline
5456658..57089PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00265; phage(gi410491466)2.15e-90Showinfo_outline
5557209..58216PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00270; phage(gi410491467)0.0Showinfo_outline
5658277..59221PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; A8C23_00275; phage(gi410491468)0.0Showinfo_outline
5759221..59487PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00280; phage(gi410491469)2.07e-49Showinfo_outline
5859490..60566PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; A8C23_00285; phage(gi410491470)0.0Showinfo_outline
5960737..60913PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00290; phage(gi410491474)7.74e-17Showinfo_outline
6061100..61279PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00295; phage(gi410491476)3.11e-12Showinfo_outline
6161276..61611PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00300; phage(gi410491477)2.29e-46Showinfo_outline
6261611..61823PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; A8C23_00305; phage(gi410491478)1.19e-36Showinfo_outline
63complement(62275..63372)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; A8C23_00310; phage(gi410491479)7.76e-99Showinfo_outline
6463693..64337PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00315; phage(gi410491480)8.37e-127Showinfo_outline
65complement(64651..66210)PHAGE_Entero_ES18_NC_006949: gp19; A8C23_00320; phage(gi62362232)2.62e-92Showinfo_outline
6666863..67948PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; A8C23_00325; phage(gi410491483)0.0Showinfo_outline
6767903..68181PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00330; phage(gi410491484)1.54e-24Showinfo_outline
6868178..70094PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; A8C23_00335; phage(gi410491485)0.0Showinfo_outline
6970084..70830PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00340; phage(gi410491486)4.75e-105Showinfo_outline
7070840..71409PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; A8C23_00345; phage(gi410491487)6.89e-128Showinfo_outline
7171485..73788PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; A8C23_00350; phage(gi410491488)0.0Showinfo_outline
7273919..75061PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; A8C23_00355; phage(gi410491489)0.0Showinfo_outline
7375139..76014PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; A8C23_00360; phage(gi410491490)0.0Showinfo_outline
7476208..77311PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; A8C23_00365; phage(gi410491491)0.0Showinfo_outline
7577313..77726PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00370; phage(gi410491492)2.57e-71Showinfo_outline
7677723..78199PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; A8C23_00375; phage(gi410491493)8.42e-91Showinfo_outline
7778199..78843PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00380; phage(gi410491494)1.45e-122Showinfo_outline
7878907..79326PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00385; phage(gi410491495)9.91e-73Showinfo_outline
7979336..79893PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; A8C23_00390; phage(gi410491496)3.48e-114Showinfo_outline
8080019..80852PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00395; phage(gi410491497)7.81e-103Showinfo_outline
8181037..81630PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; A8C23_00400; phage(gi410491498)4.07e-126Showinfo_outline
8281828..82061PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00405; phage(gi410491499)8.35e-44Showinfo_outline
8382634..83221PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; A8C23_00410; phage(gi410491500)5.77e-118Showinfo_outline
84complement(83819..84007)hypothetical protein; A8C23_004150.0Showinfo_outline
8584219..84644PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_00420; phage(gi100118)8.47e-78Showinfo_outline
8684644..84799PHAGE_Escher_Pollock_NC_027381: hypothetical protein; A8C23_00425; phage(gi849254797)1.11e-09Showinfo_outline
8784927..85505PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00430; phage(gi410491504)1.13e-73Showinfo_outline
8885634..87319PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; A8C23_00435; phage(gi410491505)0.0Showinfo_outline
8987408..88109PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00440; phage(gi410491506)4.36e-104Showinfo_outline
9088261..88524PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00445; phage(gi410491513)5.01e-38Showinfo_outline
9188771..89130hypothetical protein; A8C23_004500.0Showinfo_outline
92complement(89977..90723)hypothetical protein; A8C23_004550.0Showinfo_outline
9391338..91655PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00460; phage(gi410491515)5.26e-54Showinfo_outline
9491826..93052PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00465; phage(gi410491517)1.48e-157Showinfo_outline
9594601..94819PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00470; phage(gi410491521)3.13e-37Showinfo_outline
9694832..95044PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00475; phage(gi410491522)1.17e-32Showinfo_outline
9795181..95492PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00480; phage(gi410491523)1.58e-44Showinfo_outline
9895612..96019PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00485; phage(gi410491524)8.75e-30Showinfo_outline
9996146..96427PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00490; phage(gi410491525)1.22e-54Showinfo_outline
100complement(96455..96643)PHAGE_Burkho_KS14_NC_015273: gp43; A8C23_00495; phage(gi327198312)1.51e-18Showinfo_outline
10196869..97351PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00500; phage(gi410491527)2.44e-85Showinfo_outline
102complement(97943..98146)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; A8C23_00505; phage(gi410491529)2.75e-39Showinfo_outline
103complement(98197..98847)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00510; phage(gi410491530)4.00e-145Showinfo_outline
104complement(99481..100011)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; A8C23_00515; phage(gi410491531)1.72e-92Showinfo_outline
105100167..100604PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; A8C23_00520; phage(gi410491532)3.69e-15Showinfo_outline
106complement(100655..100930)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00525; phage(gi410491533)1.25e-39Showinfo_outline
107complement(100933..102492)PHAGE_Salmon_SSU5_NC_018843: putative helicase; A8C23_00530; phage(gi410491534)0.0Showinfo_outline
108102552..103256PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A8C23_00535; phage(gi410491535)8.14e-146Showinfo_outline
109103256..103924PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A8C23_00540; phage(gi410491536)1.34e-144Showinfo_outline
110103921..104559PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A8C23_00545; phage(gi410491537)3.54e-151Showinfo_outline
111104552..104806PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00550; phage(gi410491538)1.08e-54Showinfo_outline
112104812..105702PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A8C23_00555; phage(gi410491539)0.0Showinfo_outline
113105712..105978PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00560; phage(gi410491540)8.05e-42Showinfo_outline
114106154..106795PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; A8C23_00565; phage(gi410491411)1.27e-109Showinfo_outline
115106798..108054PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; A8C23_00570; phage(gi410491412)0.0Showinfo_outline
116108087..109661PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00575; phage(gi410491413)0.0Showinfo_outline
117109684..110583PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_00580; phage(gi410491414)0.0Showinfo_outline
118110206..110223attR0.0Showinfo_outline
119110610..111488PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; A8C23_00585; phage(gi410491415)0.0Showinfo_outline
Klebsiella pneumoniae isolate 23 plasmid pIncFIB_DHQP1400954
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 111539 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download