Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1057973903

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|CP016925.1| Klebsiella pneumoniae isolate 23 plasmid pCTXM15_DHQP1400954, 63291, gc%: 52.97%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
141.6Kbintact1403210006-51616 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)53.44%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016925.1| Klebsiella pneumoniae isolate 23 plasmid pCTXM15_DHQP1400954, 63291, gc%: 52.97%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 40 CDS

#CDS PositionBLAST HitE-ValueSequence
313983..14687PROPHAGE_Brucel_1330: transposase, putative; A8C23_00700; phage(gi23502708)1.98e-53Showinfo_outline
514726..16207PROPHAGE_Xantho_33913: Tn5041 transposase; A8C23_00705; phage(gi21231545)1.47e-47Showinfo_outline
616286..17290PROPHAGE_Shewan_MR-1: IS110 family transposase; A8C23_00710; phage(gi24375433)1.05e-58Showinfo_outline
7complement(17472..17648)PHAGE_Salmon_epsilon15_NC_004775: integrase; A8C23_00715; phage(gi30387406)2.12e-10Showinfo_outline
817978..18793dihydropteroate synthase; A8C23_007200.0Showinfo_outline
918854..19657APH(3'') family aminoglycoside O-phosphotransferase; A8C23_007250.0Showinfo_outline
1019657..20493aminoglycoside O-phosphotransferase APH(6)-Id; A8C23_007300.0Showinfo_outline
11complement(20465..20878)hypothetical protein; A8C23_007350.0Showinfo_outline
12complement(21214..22074)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_00740; phage(gi100066)5.20e-57Showinfo_outline
13complement(22257..22814)PHAGE_Salisa_1_NC_017983: hypothetical protein; A8C23_00745; phage(gi388570712)1.21e-29Showinfo_outline
1422978..23196transposase; A8C23_007500.0Showinfo_outline
1523378..24640PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_00755; phage(gi100067)3.19e-53Showinfo_outline
1624621..24743hypothetical protein; A8C23_007600.0Showinfo_outline
1724896..25771PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_00765; phage(gi100066)1.60e-170Showinfo_outline
18complement(25818..26150)tryptophan synthase subunit beta like protein; A8C23_007700.0Showinfo_outline
1926410..28959PROPHAGE_Xantho_33913: Tn5041 transposase; A8C23_00775; phage(gi21231545)4.75e-31Showinfo_outline
2129029..29733PROPHAGE_Brucel_1330: transposase, putative; A8C23_00780; phage(gi23502708)1.98e-53Showinfo_outline
2330052..31485PHAGE_Burkho_KL3_NC_015266: gp47; A8C23_00785; phage(gi327198092)4.72e-132Showinfo_outline
24complement(31519..32727)PHAGE_Burkho_KL3_NC_015266: gp45; A8C23_00790; phage(gi327198090)1.15e-40Showinfo_outline
25complement(32994..33758)PROPHAGE_Brucel_1330: transposase, putative; A8C23_00795; phage(gi23502708)6.65e-55Showinfo_outline
26complement(33901..34167)mobilization protein; A8C23_008000.0Showinfo_outline
27complement(34388..34861)PHAGE_Bacill_Blue_NC_031056: hypothetical protein; A8C23_00805; phage(gi100007)3.31e-23Showinfo_outline
2835017..36030PHAGE_Mycoba_Butters_NC_021061: integrase; A8C23_00810; phage(gi479336499)2.05e-12Showinfo_outline
29complement(35989..36168)transcriptional regulator; A8C23_008150.0Showinfo_outline
3036576..37280PROPHAGE_Brucel_1330: transposase, putative; A8C23_00820; phage(gi23502708)1.98e-53Showinfo_outline
3237330..38061PHAGE_Escher_ECML_117_NC_025441: putative 3-oxoacyl-(acyl-carrier-protein) reductase; A8C23_00825; phage(gi725950210)7.76e-07Showinfo_outline
33complement(38153..38797)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; A8C23_00830; phage(gi971764756)1.18e-17Showinfo_outline
34complement(38891..39292)phage shock protein operon transcriptional activator; A8C23_008350.0Showinfo_outline
35complement(39368..41170)PROPHAGE_Xantho_306: Tn5044 transposase; A8C23_00840; phage(gi21243163)6.92e-98Showinfo_outline
36complement(41205..44102)PROPHAGE_Xantho_33913: Tn5041 transposase; A8C23_00845; phage(gi21231545)3.03e-34Showinfo_outline
3744197..44802PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; A8C23_00850; phage(gi509140089)3.80e-22Showinfo_outline
38complement(44799..45620)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_00855; phage(gi100060)5.34e-170Showinfo_outline
Klebsiella pneumoniae isolate 23 plasmid pCTXM15_DHQP1400954
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 63291 bps
Phages: 1
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download