Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1057978929

GenInfo (GI) Number: 0000000000

Download Results: 1057978929.PHASTER.zip

gi|00000000|ref|CP016927.1| Klebsiella pneumoniae isolate 23 plasmid pIncL_M_DHQP1400954, 72093, gc%: 50.55%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
134.2Kbincomplete502528441-62657 info_outlinePHAGE_Entero_P1_NC_005856(2)52.68%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP016927.1| Klebsiella pneumoniae isolate 23 plasmid pIncL_M_DHQP1400954, 72093, gc%: 50.55%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
128441..28452attL0.0Showinfo_outline
2complement(39096..39773)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; A8C23_26920; phage(gi971821285)6.26e-06Showinfo_outline
3complement(39855..40103)hypothetical protein; A8C23_269250.0Showinfo_outline
4complement(40100..40585)hypothetical protein; A8C23_269300.0Showinfo_outline
5complement(40582..41169)endonuclease; A8C23_269350.0Showinfo_outline
6complement(41162..41410)PHAGE_Vibrio_CTX_NC_015209: RstR; A8C23_26940; phage(gi332672299)7.22e-05Showinfo_outline
7complement(41407..41868)hypothetical protein; A8C23_269450.0Showinfo_outline
842009..42554hypothetical protein; A8C23_269500.0Showinfo_outline
9complement(42707..43114)hypothetical protein; A8C23_269550.0Showinfo_outline
10complement(43116..43694)hypothetical protein; A8C23_269600.0Showinfo_outline
11complement(43672..44028)hypothetical protein; A8C23_269650.0Showinfo_outline
1244556..45743RelB antitoxin; A8C23_269700.0Showinfo_outline
1345762..46034transcriptional regulator; A8C23_269750.0Showinfo_outline
1446031..46714hypothetical protein; A8C23_269800.0Showinfo_outline
1546759..46977hypothetical protein; A8C23_269850.0Showinfo_outline
1646980..47189PHAGE_Burkho_KS14_NC_015273: gp43; A8C23_26990; phage(gi327198312)8.67e-12Showinfo_outline
17complement(47312..48577)PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; A8C23_26995; phage(gi399528790)2.38e-145Showinfo_outline
18complement(48565..48999)PHAGE_Cronob_ENT39118_NC_019934: protein umuD; A8C23_27000; phage(gi431811072)1.97e-30Showinfo_outline
19complement(49092..49424)PHAGE_Lactob_Lj771_NC_010179: MazF-like protein; A8C23_27005; phage(gi163932202)3.34e-14Showinfo_outline
20complement(49426..49683)antitoxin; A8C23_270100.0Showinfo_outline
21complement(49775..50002)hypothetical protein; A8C23_270150.0Showinfo_outline
22complement(50015..51223)PROPHAGE_Shewan_MR-1: ISSod3, transposase; A8C23_27020; phage(gi24375070)1.36e-139Showinfo_outline
2351526..52437LysR family transcriptional regulator; A8C23_270250.0Showinfo_outline
24complement(52739..53536)class D beta-lactamase; A8C23_270300.0Showinfo_outline
2553755..54030PHAGE_Entero_P1_NC_005856: InsA; A8C23_27035; phage(gi46401643)7.08e-63Showinfo_outline
2653949..54452PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; A8C23_27040; phage(gi557307573)1.15e-118Showinfo_outline
2762657..62668attR0.0Showinfo_outline
Klebsiella pneumoniae isolate 23 plasmid pIncL_M_DHQP1400954
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 72093 bps
Phages: 1
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Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download