Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1059912140

GenInfo (GI) Number: 0000000000

Download Results: 1059912140.PHASTER.zip

gi|00000000|ref|NZ_CP016924.1| Klebsiella pneumoniae isolate 23 plasmid unnamed1, complete 111539, gc%: 48.93%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1111.4Kbintact15012028-111488 info_outlinePHAGE_Salmon_SSU5_NC_018843(93)48.93%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_CP016924.1| Klebsiella pneumoniae isolate 23 plasmid unnamed1, complete 111539, gc%: 48.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 123 CDS

#CDS PositionBLAST HitE-ValueSequence
128..456PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A8C23_RS00005; phage(gi410491416)1.97e-40Showinfo_outline
2504..938PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00010; phage(gi410491417)1.48e-84Showinfo_outline
3938..1771PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00015; phage(gi410491418)2.10e-178Showinfo_outline
41869..2213PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00020; phage(gi410491419)3.73e-73Showinfo_outline
52204..2677PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00025; phage(gi410491420)2.14e-103Showinfo_outline
62679..3071PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00030; phage(gi410491421)2.03e-63Showinfo_outline
73139..3885PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A8C23_RS00035; phage(gi410491422)2.40e-146Showinfo_outline
83947..4264PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00040; phage(gi410491423)1.71e-64Showinfo_outline
94025..4042attL0.0Showinfo_outline
104381..4614PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00045; phage(gi410491424)4.30e-46Showinfo_outline
114622..9157PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; A8C23_RS00050; phage(gi410491425)0.0Showinfo_outline
129201..9536PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; A8C23_RS00055; phage(gi410491426)5.19e-67Showinfo_outline
139623..10321PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; A8C23_RS00060; phage(gi410491427)2.50e-158Showinfo_outline
1410314..11111PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_RS00065; phage(gi410491428)2.92e-175Showinfo_outline
1511099..11710PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_RS00070; phage(gi410491429)2.10e-112Showinfo_outline
1611727..23897PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A8C23_RS00075; phage(gi410491430)0.0Showinfo_outline
1723950..25395PHAGE_Klebsi_Sushi_NC_028774: tail fiber; A8C23_RS00080; phage(gi971742192)1.64e-48Showinfo_outline
1825491..25814PHAGE_Salmon_SSU5_NC_018843: putative holin; A8C23_RS00085; phage(gi410491436)3.68e-70Showinfo_outline
1925828..26520PHAGE_Salmon_SSU5_NC_018843: putative endolysin; A8C23_RS00090; phage(gi410491437)1.50e-154Showinfo_outline
2026523..26774PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00095; phage(gi410491438)5.95e-37Showinfo_outline
21complement(26977..27498)PHAGE_Ralsto_RSF1_NC_028899: putative DNA ligase; A8C23_RS00105; phage(gi971754035)1.23e-09Showinfo_outline
2227738..28403PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; A8C23_RS00110; phage(gi410491443)8.71e-132Showinfo_outline
2328403..28765PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00115; phage(gi410491444)3.41e-63Showinfo_outline
2428838..29017hypothetical protein; A8C23_RS001200.0Showinfo_outline
2529598..30008PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00130; phage(gi410491446)5.39e-28Showinfo_outline
2630191..30916PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00135; phage(gi410491448)1.04e-162Showinfo_outline
2730981..32321PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; A8C23_RS00140; phage(gi410491449)0.0Showinfo_outline
2832475..33593PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; A8C23_RS00145; phage(gi410491450)0.0Showinfo_outline
29complement(33636..34802)hypothetical protein; A8C23_RS001500.0Showinfo_outline
3035091..35879PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00155; phage(gi410491452)4.03e-93Showinfo_outline
3135959..36426PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00160; phage(gi410491453)3.40e-67Showinfo_outline
3236426..37748PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; A8C23_RS00165; phage(gi410491454)0.0Showinfo_outline
3337748..37924PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS28620; phage(gi410491455)3.07e-23Showinfo_outline
3437908..38123PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00175; phage(gi410491456)1.61e-29Showinfo_outline
3538271..38687hypothetical protein; A8C23_RS001800.0Showinfo_outline
3639617..39691tRNA0.0Showinfo_outline
37complement(39983..41572)hypothetical protein; A8C23_RS001900.0Showinfo_outline
3841813..42586PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; A8C23_RS00195; phage(gi589287556)6.34e-119Showinfo_outline
3942717..42962PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; A8C23_RS00200; phage(gi371671381)3.93e-15Showinfo_outline
4043252..43662hypothetical protein; A8C23_RS002050.0Showinfo_outline
4143672..44082PHAGE_Escher_HK639_NC_016158: hypothetical protein; A8C23_RS00210; phage(gi356870618)3.88e-17Showinfo_outline
42complement(44147..44506)hypothetical protein; A8C23_RS002150.0Showinfo_outline
4344856..45956PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; A8C23_RS00220; phage(gi169257266)5.68e-23Showinfo_outline
44complement(45951..46331)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; A8C23_RS00225; phage(gi100041)5.82e-10Showinfo_outline
4546587..46817hypothetical protein; A8C23_RS002300.0Showinfo_outline
4646934..49213PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A8C23_RS00235; phage(gi410491459)0.0Showinfo_outline
4749310..50542PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A8C23_RS00240; phage(gi410491460)0.0Showinfo_outline
4850545..50748PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS27110; phage(gi410491461)1.52e-33Showinfo_outline
4950723..54241PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; A8C23_RS00245; phage(gi410491462)0.0Showinfo_outline
5054238..54681PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00250; phage(gi410491463)2.11e-77Showinfo_outline
51complement(54781..55755)PHAGE_Lactoc_TP901_1_NC_002747: ORF54; A8C23_RS00255; phage(gi13786585)7.45e-05Showinfo_outline
52complement(55860..56507)hypothetical protein; A8C23_RS002600.0Showinfo_outline
5356658..57089PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00265; phage(gi410491466)2.15e-90Showinfo_outline
5457209..58216PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00270; phage(gi410491467)0.0Showinfo_outline
5558277..59221PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; A8C23_RS00275; phage(gi410491468)0.0Showinfo_outline
5659221..59487PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00280; phage(gi410491469)2.07e-49Showinfo_outline
5759490..60566PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; A8C23_RS00285; phage(gi410491470)0.0Showinfo_outline
5861100..61279PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00295; phage(gi410491476)3.11e-12Showinfo_outline
5961276..61611PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00300; phage(gi410491477)2.29e-46Showinfo_outline
6061611..61823PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; A8C23_RS00305; phage(gi410491478)1.19e-36Showinfo_outline
61complement(62275..63372)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; A8C23_RS00310; phage(gi410491479)7.76e-99Showinfo_outline
6263384..63596hypothetical protein; A8C23_RS286250.0Showinfo_outline
6363693..64337PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00315; phage(gi410491480)8.37e-127Showinfo_outline
64complement(64651..66210)PHAGE_Entero_ES18_NC_006949: gp19; A8C23_RS00320; phage(gi62362232)2.62e-92Showinfo_outline
6566863..67948PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; A8C23_RS00325; phage(gi410491483)0.0Showinfo_outline
6667987..68181PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00330; phage(gi410491484)4.47e-25Showinfo_outline
6768178..70094PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; A8C23_RS00335; phage(gi410491485)0.0Showinfo_outline
6870084..70830PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00340; phage(gi410491486)4.75e-105Showinfo_outline
6970840..71409PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; A8C23_RS00345; phage(gi410491487)6.89e-128Showinfo_outline
7071485..73788PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; A8C23_RS00350; phage(gi410491488)0.0Showinfo_outline
7173919..75061PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; A8C23_RS00355; phage(gi410491489)0.0Showinfo_outline
7275139..76014PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; A8C23_RS00360; phage(gi410491490)0.0Showinfo_outline
7376208..77311PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; A8C23_RS00365; phage(gi410491491)0.0Showinfo_outline
7477313..77726PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00370; phage(gi410491492)2.57e-71Showinfo_outline
7577723..78199PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; A8C23_RS00375; phage(gi410491493)8.42e-91Showinfo_outline
7678199..78843PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00380; phage(gi410491494)1.45e-122Showinfo_outline
7778907..79326PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00385; phage(gi410491495)9.91e-73Showinfo_outline
7879336..79893PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; A8C23_RS00390; phage(gi410491496)3.48e-114Showinfo_outline
7980019..80852PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00395; phage(gi410491497)7.81e-103Showinfo_outline
8081037..81630PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; A8C23_RS00400; phage(gi410491498)4.07e-126Showinfo_outline
8181828..82061PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00405; phage(gi410491499)8.35e-44Showinfo_outline
8282634..83221PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; A8C23_RS00410; phage(gi410491500)5.77e-118Showinfo_outline
8383653..83931hypothetical protein; A8C23_RS286300.0Showinfo_outline
8483928..84116PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS27120; phage(gi410491502)2.51e-12Showinfo_outline
8584219..84644PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A8C23_RS00420; phage(gi100118)8.47e-78Showinfo_outline
8684644..84799PHAGE_Escher_Pollock_NC_027381: hypothetical protein; A8C23_RS00425; phage(gi849254797)1.11e-09Showinfo_outline
8784927..85505PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00430; phage(gi410491504)1.13e-73Showinfo_outline
8885634..87319PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; A8C23_RS00435; phage(gi410491505)0.0Showinfo_outline
8987408..88109PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00440; phage(gi410491506)4.36e-104Showinfo_outline
9088261..88524PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00445; phage(gi410491513)5.01e-38Showinfo_outline
9188771..89130hypothetical protein; A8C23_RS004500.0Showinfo_outline
9289404..89832S-(hydroxymethyl)glutathione synthase; A8C23_RS271250.0Showinfo_outline
93complement(89977..90723)NYN domain-containing protein; A8C23_RS004550.0Showinfo_outline
9490895..91079hypothetical protein; A8C23_RS271300.0Showinfo_outline
9591338..91655PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00460; phage(gi410491515)5.26e-54Showinfo_outline
9691826..93052PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00465; phage(gi410491517)1.48e-157Showinfo_outline
97complement(93513..93827)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS28390; phage(gi410491518)5.87e-18Showinfo_outline
9894601..94819PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00470; phage(gi410491521)3.13e-37Showinfo_outline
9994832..95044PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00475; phage(gi410491522)1.17e-32Showinfo_outline
10095181..95492PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00480; phage(gi410491523)1.58e-44Showinfo_outline
10195612..96019PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00485; phage(gi410491524)8.75e-30Showinfo_outline
10296146..96427PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00490; phage(gi410491525)1.22e-54Showinfo_outline
103complement(96455..96643)PHAGE_Burkho_KS14_NC_015273: gp43; A8C23_RS00495; phage(gi327198312)1.51e-18Showinfo_outline
10496869..97351PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00500; phage(gi410491527)2.44e-85Showinfo_outline
105complement(97330..97644)hypothetical protein; A8C23_RS271350.0Showinfo_outline
106complement(97943..98146)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; A8C23_RS00505; phage(gi410491529)2.75e-39Showinfo_outline
107complement(98197..98847)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00510; phage(gi410491530)4.00e-145Showinfo_outline
108complement(99481..100011)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; A8C23_RS00515; phage(gi410491531)1.72e-92Showinfo_outline
109100167..100604PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; A8C23_RS00520; phage(gi410491532)3.69e-15Showinfo_outline
110complement(100655..100930)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00525; phage(gi410491533)1.25e-39Showinfo_outline
111complement(100933..102492)PHAGE_Salmon_SSU5_NC_018843: putative helicase; A8C23_RS00530; phage(gi410491534)0.0Showinfo_outline
112102576..103256PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A8C23_RS00535; phage(gi410491535)5.37e-146Showinfo_outline
113103256..103924PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A8C23_RS00540; phage(gi410491536)1.34e-144Showinfo_outline
114103921..104559PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A8C23_RS00545; phage(gi410491537)3.54e-151Showinfo_outline
115104552..104806PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00550; phage(gi410491538)1.08e-54Showinfo_outline
116104803..105702PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A8C23_RS00555; phage(gi410491539)0.0Showinfo_outline
117105712..105978PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00560; phage(gi410491540)8.05e-42Showinfo_outline
118106154..106795PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; A8C23_RS00565; phage(gi410491411)1.27e-109Showinfo_outline
119106798..108054PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; A8C23_RS00570; phage(gi410491412)0.0Showinfo_outline
120108072..109661PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00575; phage(gi410491413)0.0Showinfo_outline
121109684..110583PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A8C23_RS00580; phage(gi410491414)0.0Showinfo_outline
122110206..110223attR0.0Showinfo_outline
123110610..111488PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; A8C23_RS00585; phage(gi410491415)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 111539 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download